# Report for collapsed table: /data/shared_data/ZYJ_Amplicon/seaweed/taxonomy/SRR10092954/SRR10092954.faprotax # Collapsed table generated on: 2025.01.10 03:52:08 # Original table: /data/shared_data/ZYJ_Amplicon/seaweed/taxonomy/SRR10092954/SRR10092954.otuna.CAPs.fa.taxonomy.tsv # Details: # Original classical table contained 65 rows and 3 columns # After filtering rows & columns, obtained a table containing 65 rows & 2 columns # After (potentially) filtering out records based on name, obtained a table comprising 65 records & 2 data entries per record # Used command: # /data/software/FAPROTAX/FAPROTAX_1.2.10/collapse_table.py -i /data/shared_data/ZYJ_Amplicon/seaweed/taxonomy/SRR10092954/SRR10092954.otuna.CAPs.fa.taxonomy.tsv -o /data/shared_data/ZYJ_Amplicon/seaweed/taxonomy/SRR10092954/SRR10092954.faprotax -g /data/software/FAPROTAX/FAPROTAX_1.2.10/FAPROTAX.txt -r /data/shared_data/ZYJ_Amplicon/seaweed/taxonomy/SRR10092954/SRR10092954.report.txt -v -d Taxon # # Summary of group assignments: # methanotrophy: 0 records # acetoclastic_methanogenesis: 0 records # methanogenesis_by_disproportionation_of_methyl_groups: 0 records # methanogenesis_using_formate: 0 records # methanogenesis_by_CO2_reduction_with_H2: 0 records # methanogenesis_by_reduction_of_methyl_compounds_with_H2: 0 records # hydrogenotrophic_methanogenesis: 0 records # methanogenesis: 0 records # methanol_oxidation: 2 records # methylotrophy: 2 records # aerobic_ammonia_oxidation: 0 records # aerobic_nitrite_oxidation: 0 records # nitrification: 0 records # sulfate_respiration: 0 records # sulfur_respiration: 0 records # dark_sulfite_oxidation: 0 records # sulfite_respiration: 0 records # thiosulfate_respiration: 0 records # respiration_of_sulfur_compounds: 0 records # arsenate_detoxification: 0 records # arsenate_respiration: 0 records # dissimilatory_arsenate_reduction: 0 records # arsenite_oxidation_detoxification: 0 records # arsenite_oxidation_energy_yielding: 0 records # dissimilatory_arsenite_oxidation: 0 records # anammox: 0 records # nitrate_denitrification: 0 records # nitrite_denitrification: 0 records # nitrous_oxide_denitrification: 0 records # denitrification: 0 records # chitinolysis: 0 records # knallgas_bacteria: 0 records # dark_hydrogen_oxidation: 0 records # nitrogen_fixation: 0 records # nitrate_ammonification: 0 records # nitrite_ammonification: 0 records # nitrite_respiration: 0 records # cellulolysis: 0 records # xylanolysis: 0 records # dark_sulfide_oxidation: 0 records # dark_sulfur_oxidation: 0 records # dark_thiosulfate_oxidation: 0 records # dark_oxidation_of_sulfur_compounds: 0 records # manganese_oxidation: 0 records # manganese_respiration: 0 records # ligninolysis: 0 records # fermentation: 3 records # aerobic_chemoheterotrophy: 8 records # invertebrate_parasites: 0 records # human_pathogens_septicemia: 0 records # human_pathogens_pneumonia: 0 records # human_pathogens_nosocomia: 0 records # human_pathogens_meningitis: 0 records # human_pathogens_gastroenteritis: 0 records # human_pathogens_diarrhea: 0 records # human_pathogens_all: 3 records # fish_parasites: 0 records # human_gut: 1 records # human_associated: 3 records # mammal_gut: 1 records # animal_parasites_or_symbionts: 4 records # plant_pathogen: 0 records # oil_bioremediation: 0 records # aromatic_hydrocarbon_degradation: 0 records # aromatic_compound_degradation: 0 records # aliphatic_non_methane_hydrocarbon_degradation: 0 records # hydrocarbon_degradation: 0 records # dark_iron_oxidation: 0 records # iron_respiration: 0 records # nitrate_respiration: 1 records # nitrate_reduction: 2 records # nitrogen_respiration: 1 records # fumarate_respiration: 1 records # intracellular_parasites: 0 records # chlorate_reducers: 0 records # predatory_or_exoparasitic: 0 records # chloroplasts: 0 records # nonphotosynthetic_cyanobacteria: 0 records # photosynthetic_cyanobacteria: 1 records # anoxygenic_photoautotrophy_H2_oxidizing: 0 records # anoxygenic_photoautotrophy_S_oxidizing: 0 records # anoxygenic_photoautotrophy_Fe_oxidizing: 0 records # anoxygenic_photoautotrophy: 0 records # oxygenic_photoautotrophy: 1 records # photoautotrophy: 1 records # aerobic_anoxygenic_phototrophy: 0 records # photoheterotrophy: 0 records # phototrophy: 1 records # plastic_degradation: 0 records # ureolysis: 0 records # reductive_acetogenesis: 0 records # chemoheterotrophy: 18 records # # Loaded 92 groups comprising 8355 members (5060 unique members) # Established 54 assignments of records to groups # 21 out of 65 records (32.3077 %) were assigned to at least one group # 44 out of 65 records (67.6923 %) could not be assigned to any group (leftovers) # 18 groups were represented (i.e. associated with at least one record) # Detailed group assignments are listed below # methanotrophy (0 records): # acetoclastic_methanogenesis (0 records): # methanogenesis_by_disproportionation_of_methyl_groups (0 records): # methanogenesis_using_formate (0 records): # methanogenesis_by_CO2_reduction_with_H2 (0 records): # methanogenesis_by_reduction_of_methyl_compounds_with_H2 (0 records): # hydrogenotrophic_methanogenesis (0 records): # methanogenesis (0 records): # methanol_oxidation (2 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_597441; f__Methylophilaceae; g__BACL14; s__BACL14 sp000168995 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_597441; f__Methylophilaceae; g__BACL14; s__BACL14 sp001044335 # methylotrophy (2 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_597441; f__Methylophilaceae; g__BACL14; s__BACL14 sp000168995 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_597441; f__Methylophilaceae; g__BACL14; s__BACL14 sp001044335 # aerobic_ammonia_oxidation (0 records): # aerobic_nitrite_oxidation (0 records): # nitrification (0 records): # sulfate_respiration (0 records): # sulfur_respiration (0 records): # dark_sulfite_oxidation (0 records): # sulfite_respiration (0 records): # thiosulfate_respiration (0 records): # respiration_of_sulfur_compounds (0 records): # arsenate_detoxification (0 records): # arsenate_respiration (0 records): # dissimilatory_arsenate_reduction (0 records): # arsenite_oxidation_detoxification (0 records): # arsenite_oxidation_energy_yielding (0 records): # dissimilatory_arsenite_oxidation (0 records): # anammox (0 records): # nitrate_denitrification (0 records): # nitrite_denitrification (0 records): # nitrous_oxide_denitrification (0 records): # denitrification (0 records): # chitinolysis (0 records): # knallgas_bacteria (0 records): # dark_hydrogen_oxidation (0 records): # nitrogen_fixation (0 records): # nitrate_ammonification (0 records): # nitrite_ammonification (0 records): # nitrite_respiration (0 records): # cellulolysis (0 records): # xylanolysis (0 records): # dark_sulfide_oxidation (0 records): # dark_sulfur_oxidation (0 records): # dark_thiosulfate_oxidation (0 records): # dark_oxidation_of_sulfur_compounds (0 records): # manganese_oxidation (0 records): # manganese_respiration (0 records): # ligninolysis (0 records): # fermentation (3 records): d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Micrococcaceae; g__Rothia; s__Rothia sp001808955 d__Bacteria; p__Firmicutes_D; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Pasteurellaceae; g__Haemophilus_D_735815 # aerobic_chemoheterotrophy (8 records): d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Polaribacter_A d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Winogradskyella d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Pelagibacterales; f__Pelagibacteraceae; g__Pelagibacter_A_533952 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Ruegeria_B_490686; s__ d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Emcibacteraceae; g__Paremcibacter; s__Paremcibacter congregatus d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Pasteurellaceae; g__Haemophilus_D_735815 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_650611; f__Pseudomonadaceae; g__Pseudomonas_E_647464 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales_616009; f__Xanthomonadaceae_616009; g__Stenotrophomonas_A_615274 # invertebrate_parasites (0 records): # human_pathogens_septicemia (0 records): # human_pathogens_pneumonia (0 records): # human_pathogens_nosocomia (0 records): # human_pathogens_meningitis (0 records): # human_pathogens_gastroenteritis (0 records): # human_pathogens_diarrhea (0 records): # human_pathogens_all (3 records): d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Propionibacteriales; f__Propionibacteriaceae; g__Cutibacterium; s__Cutibacterium acnes d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter_E; s__Helicobacter_E pylori_CI d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales_616009; f__Xanthomonadaceae_616009; g__Stenotrophomonas_A_615274 # fish_parasites (0 records): # human_gut (1 records): d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter_E; s__Helicobacter_E pylori_CI # human_associated (3 records): d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Propionibacteriales; f__Propionibacteriaceae; g__Cutibacterium; s__Cutibacterium acnes d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter_E; s__Helicobacter_E pylori_CI d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales_616009; f__Xanthomonadaceae_616009; g__Stenotrophomonas_A_615274 # mammal_gut (1 records): d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter_E; s__Helicobacter_E pylori_CI # animal_parasites_or_symbionts (4 records): d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Propionibacteriales; f__Propionibacteriaceae; g__Cutibacterium; s__Cutibacterium acnes d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter_E; s__Helicobacter_E pylori_CI d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Pasteurellaceae; g__Haemophilus_D_735815 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales_616009; f__Xanthomonadaceae_616009; g__Stenotrophomonas_A_615274 # plant_pathogen (0 records): # oil_bioremediation (0 records): # aromatic_hydrocarbon_degradation (0 records): # aromatic_compound_degradation (0 records): # aliphatic_non_methane_hydrocarbon_degradation (0 records): # hydrocarbon_degradation (0 records): # dark_iron_oxidation (0 records): # iron_respiration (0 records): # nitrate_respiration (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales_616009; f__Xanthomonadaceae_616009; g__Stenotrophomonas_A_615274 # nitrate_reduction (2 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Pasteurellaceae; g__Haemophilus_D_735815 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales_616009; f__Xanthomonadaceae_616009; g__Stenotrophomonas_A_615274 # nitrogen_respiration (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales_616009; f__Xanthomonadaceae_616009; g__Stenotrophomonas_A_615274 # fumarate_respiration (1 records): d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter_E; s__Helicobacter_E pylori_CI # intracellular_parasites (0 records): # chlorate_reducers (0 records): # predatory_or_exoparasitic (0 records): # chloroplasts (0 records): # nonphotosynthetic_cyanobacteria (0 records): # photosynthetic_cyanobacteria (1 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 # anoxygenic_photoautotrophy_H2_oxidizing (0 records): # anoxygenic_photoautotrophy_S_oxidizing (0 records): # anoxygenic_photoautotrophy_Fe_oxidizing (0 records): # anoxygenic_photoautotrophy (0 records): # oxygenic_photoautotrophy (1 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 # photoautotrophy (1 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 # aerobic_anoxygenic_phototrophy (0 records): # photoheterotrophy (0 records): # phototrophy (1 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 # plastic_degradation (0 records): # ureolysis (0 records): # reductive_acetogenesis (0 records): # chemoheterotrophy (18 records): d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Micrococcaceae; g__Rothia; s__Rothia sp001808955 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__MAG-120531; s__MAG-120531 sp000173115 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__MAG-121220-bin8; s__MAG-121220-bin8 sp902559035 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__MS024-2A; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__MS024-2A; s__MS024-2A sp000173095 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__MS024-2A; s__MS024-2A sp902546725 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Polaribacter_A d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Winogradskyella d__Bacteria; p__Firmicutes_D; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Pelagibacterales; f__Pelagibacteraceae; g__Pelagibacter_A_533952 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Ruegeria_B_490686; s__ d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Emcibacteraceae; g__Paremcibacter; s__Paremcibacter congregatus d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_597441; f__Methylophilaceae; g__BACL14; s__BACL14 sp000168995 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_597441; f__Methylophilaceae; g__BACL14; s__BACL14 sp001044335 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Pasteurellaceae; g__Haemophilus_D_735815 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_650611; f__Pseudomonadaceae; g__Pseudomonas_E_647464 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales_616009; f__Xanthomonadaceae_616009; g__Stenotrophomonas_A_615274