3 Archaea WCHD3 3 Archaea WCHD3 4 Bacteria Cyanobacteria Chloroplast Stramenopiles 20 Bacteria Cyanobacteria Chloroplast Stramenopiles 7 Bacteria Gemmatimonadetes Gemm 13 Bacteria Actinobacteria Acidimicrobiia Acidimicrobiales koll13 23 Bacteria Proteobacteria Alphaproteobacteria 15 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales 82 Bacteria Bacteroidetes Bacteroidia Bacteroidales 88 Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Thiotrichaceae 4 Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae 33 Bacteria Bacteroidetes Bacteroidia Bacteroidales 14 Bacteria Nitrospirae Nitrospira Nitrospirales LCP 7 Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales 17 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhodobiaceae Afifella 29 Bacteria Bacteroidetes Bacteroidia Bacteroidales 44 Bacteria Chlorobi Ignavibacteria Ignavibacteriales Ignavibacteriaceae 47 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae 10 Bacteria Bacteroidetes Cytophagia Cytophagales Flammeovirgaceae 23 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae 5 Bacteria Bacteroidetes Bacteroidia Bacteroidales VC21_Bac22 89 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae Desulfosarcina 11 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Devosia 88 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae 165 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae Halochromatium 14 Bacteria Bacteroidetes Bacteroidia Bacteroidales 4 Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Paludibacter 6 Bacteria Spirochaetes Spirochaetes Spirochaetales Spirochaetaceae Spirochaeta 31 Bacteria Caldithrix Caldithrixae Caldithrixales Caldithrixaceae 32 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae 14 Bacteria Bacteroidetes Bacteroidia Bacteroidales 18 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae 16 Bacteria Bacteroidetes Cytophagia Cytophagales Flammeovirgaceae 5 Bacteria Proteobacteria Deltaproteobacteria Desulfarculales Desulfarculaceae 5 Bacteria Proteobacteria Deltaproteobacteria Myxococcales 7 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Phaeobacter 264 Bacteria Bacteroidetes Bacteroidia Bacteroidales 8 Bacteria Cyanobacteria Chloroplast Stramenopiles 150 Bacteria Bacteroidetes Bacteroidia Bacteroidales 6 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhodospirillaceae 18 Bacteria Bacteroidetes Bacteroidia Bacteroidales 85 Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae 9 Bacteria Proteobacteria Alphaproteobacteria 17 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae 57 Bacteria Bacteroidetes Bacteroidia Bacteroidales 8 Bacteria Planctomycetes Phycisphaerae MSBL9 28 Bacteria Proteobacteria Betaproteobacteria Hydrogenophilales Hydrogenophilaceae Thiobacillus 6 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae 22 Bacteria Cyanobacteria Chloroplast Stramenopiles 5 Archaea Euryarchaeota Thermoplasmata E2 CCA47 32 Bacteria Hyd24 WM88 33 Bacteria Bacteroidetes Bacteroidia Bacteroidales SB 17 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae 7 Bacteria Chlorobi Ignavibacteria Ignavibacteriales lheB3 39 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae 4 Bacteria Bacteroidetes Bacteroidia Bacteroidales SB 4 Bacteria Chloroflexi Anaerolineae Anaerolineales Anaerolinaceae C1_B004 21 Bacteria Proteobacteria Deltaproteobacteria Desulfarculales Desulfarculaceae 5 Bacteria Planctomycetes Planctomycetia Pirellulales Pirellulaceae 8 Bacteria Chlorobi Ignavibacteria Ignavibacteriales lheB3 32 Bacteria Bacteroidetes Saprospiraceae 4 Bacteria Actinobacteria Actinobacteria Actinomycetales 9 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae 134 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae 10 Bacteria Gemmatimonadetes Gemm 27 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae 36 Bacteria Bacteroidetes Bacteroidia Bacteroidales 22 Bacteria Chlorobi Ignavibacteria Ignavibacteriales Ignavibacteriaceae 307 Bacteria Cyanobacteria Chloroplast Stramenopiles 6 Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Piscirickettsiaceae 10 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae Desulfococcus 12 Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterales Syntrophaceae Desulfobacca 11 Bacteria Bacteroidetes Chitinophagaceae 13 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Phyllobacteriaceae 5 Bacteria Proteobacteria Betaproteobacteria MND1 19 Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Sinobacteraceae 44 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae 6 Bacteria Verrucomicrobia 49 Bacteria Chloroflexi Anaerolineae envOPS12 8 Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Thiotrichaceae Beggiatoa 41 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae 27 Bacteria Bacteroidetes Bacteroidia Bacteroidales 7 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae 9 Bacteria Chlorobi Ignavibacteria Ignavibacteriales Ignavibacteriaceae 41 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 8 Bacteria Firmicutes Clostridia Clostridiales Christensenellaceae 44 Bacteria Acidobacteria OS 15 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 36 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae 3 Bacteria Planctomycetes Planctomycetia Pirellulales Pirellulaceae 10 Bacteria Proteobacteria Alphaproteobacteria Ellin329 22 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae 5 Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio 14 Bacteria Chlorobi Ignavibacteria Ignavibacteriales Ignavibacteriaceae 3 Bacteria Chloroflexi Anaerolineae CFB 6 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae 5 Bacteria Bacteroidetes Bacteroidia Bacteroidales 17 Bacteria Bacteroidetes Cytophagia Cytophagales Flammeovirgaceae 4 Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Thiotrichaceae 6 Bacteria Spirochaetes Spirochaetes Spirochaetales Spirochaetaceae 4 Bacteria Bacteroidetes Flavobacteriia Flavobacteriales Cryomorphaceae 12 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae 17 Bacteria Bacteroidetes Bacteroidia Bacteroidales VC21_Bac22 6 Bacteria Proteobacteria Betaproteobacteria 4 Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae 8 Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Piscirickettsiaceae 9 Bacteria Cyanobacteria Chloroplast Stramenopiles 13 Bacteria Proteobacteria Gammaproteobacteria Methylococcales Methylococcaceae Methylocaldum 8 Bacteria Bacteroidetes Bacteroidia Bacteroidales 33 Bacteria Proteobacteria Deltaproteobacteria Desulfarculales Desulfarculaceae 117 Bacteria Bacteroidetes Bacteroidia Bacteroidales SB 14 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae 5 Bacteria Spirochaetes Spirochaetes Spirochaetales Spirochaetaceae 15 Bacteria Verrucomicrobia Verruco LD1 18 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Rhodoplanes 5 Bacteria Proteobacteria Deltaproteobacteria Desulfarculales Desulfarculaceae 6 Bacteria Proteobacteria Alphaproteobacteria 28 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Marivita 9 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 66 Bacteria Proteobacteria Gammaproteobacteria Alteromonadales OM60 4 Bacteria Bacteroidetes Saprospiraceae 5 Bacteria Bacteroidetes Saprospiraceae 9 Bacteria Bacteroidetes Bacteroidia Bacteroidales 10 Bacteria Bacteroidetes Bacteroidia Bacteroidales 13 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae Desulfococcus 5 Bacteria Proteobacteria Deltaproteobacteria Myxococcales 8 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 8 Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Erythrobacteraceae Citromicrobium 5 Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Dyella Dyella_ginsengisoli 35 Bacteria Chlorobi Ignavibacteria Ignavibacteriales Ignavibacteriaceae 5 Bacteria Bacteroidetes Cytophagia Cytophagales Flammeovirgaceae 8 Bacteria Bacteroidetes Bacteroidia Bacteroidales 62 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae Desulfococcus 7 Bacteria Acidobacteria OS 18 Bacteria Bacteroidetes Saprospiraceae 11 Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter 15 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Rhodoplanes 5 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae 13 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae Desulfococcus 10 Bacteria Bacteroidetes Bacteroidia Bacteroidales 15 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae 4 Bacteria Chloroflexi Anaerolineae envOPS12 7 Bacteria Bacteroidetes Bacteroidia Bacteroidales 7 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae 30 Bacteria Bacteroidetes Chitinophagaceae 5 Bacteria Chloroflexi Anaerolineae GCA004 6 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Loktanella Loktanella_salsilacus 5 Bacteria WS3 PRR PBS 7 Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae 37 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Phyllobacteriaceae 5 Bacteria Bacteroidetes Saprospiraceae 7 Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Erythrobacteraceae 5 Bacteria Caldithrix Caldithrixae Caldithrixales Caldithrixaceae 22 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 7 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae 5 Bacteria Actinobacteria Actinobacteria Actinomycetales Kineosporiaceae 5 Bacteria Bacteroidetes Bacteroidia Bacteroidales SB 4 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae 70 Bacteria Bacteroidetes Flavobacteriia Flavobacteriales Flavobacteriaceae 7 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales 6 Bacteria Bacteroidetes Flavobacteriia Flavobacteriales Flavobacteriaceae 8 Bacteria Acidobacteria OS 44 Bacteria Proteobacteria Deltaproteobacteria Myxococcales 13 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Hyphomicrobium 5 Bacteria Firmicutes Clostridia Clostridiales Christensenellaceae 4 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Kaistia 9 Bacteria Proteobacteria Deltaproteobacteria MBNT15 7 Bacteria Proteobacteria Deltaproteobacteria NB1 33 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae 12 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 12 Bacteria WS3 PRR GN03 KSB4 29 Bacteria Proteobacteria Deltaproteobacteria Desulfarculales Desulfarculaceae 4 Bacteria Bacteroidetes Cytophagia Cytophagales Cytophagaceae 4 Bacteria Firmicutes Clostridia Clostridiales Christensenellaceae 16 Bacteria Proteobacteria Gammaproteobacteria 10 Bacteria Acidobacteria OS 4 Bacteria Bacteroidetes Flavobacteriia Flavobacteriales Cryomorphaceae 19 Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Piscirickettsiaceae 19 Bacteria Firmicutes Clostridia Clostridiales Christensenellaceae 12 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Devosia 4 Bacteria Bacteroidetes Flavobacteriia Flavobacteriales Flavobacteriaceae Cellulophaga 3 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae 6 Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Paludibacter 4 Bacteria Actinobacteria Actinobacteria Actinomycetales Cellulomonadaceae Demequina 6 Bacteria Chloroflexi Anaerolineae GCA004 9 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Rhodoplanes 7 Bacteria Planctomycetes Planctomycetia Planctomycetales Planctomycetaceae Planctomyces 32 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae 8 Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae 7 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Agrobacterium 4 Bacteria Chloroflexi Anaerolineae Anaerolineales Anaerolinaceae 4 Bacteria Chlorobi BSV26 PK329 7 Bacteria Bacteroidetes Bacteroidia Bacteroidales 7 Bacteria Proteobacteria Deltaproteobacteria 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales 10 Bacteria Spirochaetes Spirochaetes Spirochaetales Spirochaetaceae 7 Bacteria Gemmatimonadetes Gemm 5 Bacteria Bacteroidetes Bacteroidia Bacteroidales 8 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae Desulfococcus 4 Bacteria Proteobacteria Betaproteobacteria 15 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales 17 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae 6 Bacteria Bacteroidetes Bacteroidia Bacteroidales 3 Bacteria Planctomycetes OM190 agg27 9 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae 7 Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Erythrobacteraceae Lutibacterium 17 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 11 Bacteria Bacteroidetes Flavobacteriia Flavobacteriales Cryomorphaceae 69 Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae 3 Bacteria Acidobacteria Acidobacteria CCU21 7 Bacteria Bacteroidetes Flavobacteriia Flavobacteriales Flavobacteriaceae 7 Bacteria Fibrobacteres TG3 TG3 TSCOR003 4 Bacteria Bacteroidetes Bacteroidia Bacteroidales 14 Bacteria Bacteroidetes Bacteroidia Bacteroidales 4 Bacteria Chloroflexi Anaerolineae envOPS12 59 Bacteria Bacteroidetes Bacteroidia Bacteroidales 18 Bacteria Bacteroidetes Bacteroidia Bacteroidales 9 Bacteria Chloroflexi Anaerolineae Anaerolineales Anaerolinaceae 39 Bacteria Proteobacteria Deltaproteobacteria Myxococcales 3 Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales 5 Bacteria Bacteroidetes Bacteroidia Bacteroidales 30 Bacteria Caldithrix Caldithrixae Caldithrixales Caldithrixaceae LCP 15 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Phaeobacter 24 Bacteria Bacteroidetes Bacteroidia Bacteroidales 4 Bacteria Bacteroidetes Bacteroidia Bacteroidales 11 Bacteria Bacteroidetes Saprospiraceae 15 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae Desulfococcus 10 Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales 3 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae 13 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae 3 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 10 Bacteria Proteobacteria Alphaproteobacteria 5 Bacteria GN04 5 Bacteria Gemmatimonadetes Gemm 7 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Devosia 7 Bacteria Firmicutes Clostridia Clostridiales 5 Bacteria Proteobacteria Deltaproteobacteria Desulfarculales Desulfarculaceae 3 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae 5 Bacteria Actinobacteria Thermoleophilia Gaiellales 4 Bacteria Bacteroidetes Flavobacteriia Flavobacteriales Flavobacteriaceae Lutimonas 6 Bacteria LCP SAW1_B44 8 Bacteria Bacteroidetes Flavobacteriia Flavobacteriales Flavobacteriaceae 14 Bacteria Chloroflexi Anaerolineae Anaerolineales Anaerolinaceae 24 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae 11 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae 5 Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales 10 Bacteria Proteobacteria Betaproteobacteria IS 5 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae Thiorhodococcus 51 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae 6 Bacteria Proteobacteria Gammaproteobacteria Alteromonadales OM60 10 Bacteria Spirochaetes Spirochaetes Spirochaetales Spirochaetaceae Spirochaeta 11 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae Desulfococcus 3 Bacteria Bacteroidetes Saprospiraceae 10 Bacteria Proteobacteria Betaproteobacteria IS 31 Bacteria Proteobacteria Gammaproteobacteria Thiohalorhabdales 6 Bacteria Bacteroidetes Bacteroidia Bacteroidales 10 Bacteria Chloroflexi Anaerolineae GCA004 7 Bacteria Proteobacteria Gammaproteobacteria HTCC2188 HTCC2089 4 Bacteria Chloroflexi Anaerolineae GCA004 19 Bacteria Chlorobi Ignavibacteria Ignavibacteriales Ignavibacteriaceae 3 Bacteria Firmicutes Clostridia Clostridiales Christensenellaceae 11 Bacteria Bacteroidetes Bacteroidia Bacteroidales 6 Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterales Syntrophaceae Desulfomonile 4 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales 49 Bacteria Bacteroidetes Bacteroidia Bacteroidales 3 Bacteria Acidobacteria OS 3 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae 22 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae 22 Bacteria Chlorobi Ignavibacteria Ignavibacteriales lheB3 7 Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Piscirickettsiaceae 13 Bacteria Bacteroidetes Bacteroidia Bacteroidales SB 4 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Hyphomonas 11 Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae 7 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae 3 Bacteria Proteobacteria Gammaproteobacteria 16 Bacteria Chloroflexi Anaerolineae Anaerolineales Anaerolinaceae SHD