# Report for collapsed table: /data/shared_data/ZYJ_Amplicon/seagrass/taxonomy/SRR11354733/SRR11354733.faprotax # Collapsed table generated on: 2025.01.10 02:46:46 # Original table: /data/shared_data/ZYJ_Amplicon/seagrass/taxonomy/SRR11354733/SRR11354733.otuna.CAPs.fa.taxonomy.tsv # Details: # Original classical table contained 1120 rows and 3 columns # After filtering rows & columns, obtained a table containing 1120 rows & 2 columns # After (potentially) filtering out records based on name, obtained a table comprising 1120 records & 2 data entries per record # Used command: # /data/software/FAPROTAX/FAPROTAX_1.2.10/collapse_table.py -i /data/shared_data/ZYJ_Amplicon/seagrass/taxonomy/SRR11354733/SRR11354733.otuna.CAPs.fa.taxonomy.tsv -o /data/shared_data/ZYJ_Amplicon/seagrass/taxonomy/SRR11354733/SRR11354733.faprotax -g /data/software/FAPROTAX/FAPROTAX_1.2.10/FAPROTAX.txt -r /data/shared_data/ZYJ_Amplicon/seagrass/taxonomy/SRR11354733/SRR11354733.report.txt -v -d Taxon # # Summary of group assignments: # methanotrophy: 0 records # acetoclastic_methanogenesis: 0 records # methanogenesis_by_disproportionation_of_methyl_groups: 2 records # methanogenesis_using_formate: 0 records # methanogenesis_by_CO2_reduction_with_H2: 0 records # methanogenesis_by_reduction_of_methyl_compounds_with_H2: 1 records # hydrogenotrophic_methanogenesis: 1 records # methanogenesis: 3 records # methanol_oxidation: 0 records # methylotrophy: 1 records # aerobic_ammonia_oxidation: 0 records # aerobic_nitrite_oxidation: 0 records # nitrification: 0 records # sulfate_respiration: 14 records # sulfur_respiration: 0 records # dark_sulfite_oxidation: 0 records # sulfite_respiration: 2 records # thiosulfate_respiration: 1 records # respiration_of_sulfur_compounds: 15 records # arsenate_detoxification: 0 records # arsenate_respiration: 0 records # dissimilatory_arsenate_reduction: 0 records # arsenite_oxidation_detoxification: 0 records # arsenite_oxidation_energy_yielding: 0 records # dissimilatory_arsenite_oxidation: 0 records # anammox: 0 records # nitrate_denitrification: 0 records # nitrite_denitrification: 0 records # nitrous_oxide_denitrification: 0 records # denitrification: 0 records # chitinolysis: 0 records # knallgas_bacteria: 0 records # dark_hydrogen_oxidation: 2 records # nitrogen_fixation: 0 records # nitrate_ammonification: 0 records # nitrite_ammonification: 0 records # nitrite_respiration: 0 records # cellulolysis: 0 records # xylanolysis: 0 records # dark_sulfide_oxidation: 1 records # dark_sulfur_oxidation: 1 records # dark_thiosulfate_oxidation: 1 records # dark_oxidation_of_sulfur_compounds: 1 records # manganese_oxidation: 0 records # manganese_respiration: 0 records # ligninolysis: 0 records # fermentation: 4 records # aerobic_chemoheterotrophy: 4 records # invertebrate_parasites: 0 records # human_pathogens_septicemia: 0 records # human_pathogens_pneumonia: 0 records # human_pathogens_nosocomia: 0 records # human_pathogens_meningitis: 0 records # human_pathogens_gastroenteritis: 0 records # human_pathogens_diarrhea: 0 records # human_pathogens_all: 0 records # fish_parasites: 0 records # human_gut: 0 records # human_associated: 0 records # mammal_gut: 0 records # animal_parasites_or_symbionts: 0 records # plant_pathogen: 0 records # oil_bioremediation: 0 records # aromatic_hydrocarbon_degradation: 1 records # aromatic_compound_degradation: 1 records # aliphatic_non_methane_hydrocarbon_degradation: 0 records # hydrocarbon_degradation: 1 records # dark_iron_oxidation: 0 records # iron_respiration: 0 records # nitrate_respiration: 0 records # nitrate_reduction: 0 records # nitrogen_respiration: 0 records # fumarate_respiration: 0 records # intracellular_parasites: 0 records # chlorate_reducers: 0 records # predatory_or_exoparasitic: 0 records # chloroplasts: 0 records # nonphotosynthetic_cyanobacteria: 0 records # photosynthetic_cyanobacteria: 0 records # anoxygenic_photoautotrophy_H2_oxidizing: 0 records # anoxygenic_photoautotrophy_S_oxidizing: 0 records # anoxygenic_photoautotrophy_Fe_oxidizing: 0 records # anoxygenic_photoautotrophy: 0 records # oxygenic_photoautotrophy: 0 records # photoautotrophy: 0 records # aerobic_anoxygenic_phototrophy: 0 records # photoheterotrophy: 0 records # phototrophy: 0 records # plastic_degradation: 0 records # ureolysis: 1 records # reductive_acetogenesis: 0 records # chemoheterotrophy: 26 records # # Loaded 92 groups comprising 8355 members (5060 unique members) # Established 84 assignments of records to groups # 29 out of 1120 records (2.58929 %) were assigned to at least one group # 1091 out of 1120 records (97.4107 %) could not be assigned to any group (leftovers) # 21 groups were represented (i.e. associated with at least one record) # Detailed group assignments are listed below # methanotrophy (0 records): # acetoclastic_methanogenesis (0 records): # methanogenesis_by_disproportionation_of_methyl_groups (2 records): d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanococcoides d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanolobus # methanogenesis_using_formate (0 records): # methanogenesis_by_CO2_reduction_with_H2 (0 records): # methanogenesis_by_reduction_of_methyl_compounds_with_H2 (1 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # hydrogenotrophic_methanogenesis (1 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # methanogenesis (3 records): d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanococcoides d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanolobus d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # methanol_oxidation (0 records): # methylotrophy (1 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # aerobic_ammonia_oxidation (0 records): # aerobic_nitrite_oxidation (0 records): # nitrification (0 records): # sulfate_respiration (14 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfococcaceae; g__Desulfococcus; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA2156; g__UBA2156; s__UBA2156 sp002328165 d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulforhopalus # sulfur_respiration (0 records): # dark_sulfite_oxidation (0 records): # sulfite_respiration (2 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobaccia; o__Desulfobaccales; f__Desulfobaccaceae; g__Desulfobacca; s__Desulfobacca acetoxidans d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulforhopalus # thiosulfate_respiration (1 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulforhopalus # respiration_of_sulfur_compounds (15 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobaccia; o__Desulfobaccales; f__Desulfobaccaceae; g__Desulfobacca; s__Desulfobacca acetoxidans d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfococcaceae; g__Desulfococcus; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA2156; g__UBA2156; s__UBA2156 sp002328165 d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulforhopalus # arsenate_detoxification (0 records): # arsenate_respiration (0 records): # dissimilatory_arsenate_reduction (0 records): # arsenite_oxidation_detoxification (0 records): # arsenite_oxidation_energy_yielding (0 records): # dissimilatory_arsenite_oxidation (0 records): # anammox (0 records): # nitrate_denitrification (0 records): # nitrite_denitrification (0 records): # nitrous_oxide_denitrification (0 records): # denitrification (0 records): # chitinolysis (0 records): # knallgas_bacteria (0 records): # dark_hydrogen_oxidation (2 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulforhopalus # nitrogen_fixation (0 records): # nitrate_ammonification (0 records): # nitrite_ammonification (0 records): # nitrite_respiration (0 records): # cellulolysis (0 records): # xylanolysis (0 records): # dark_sulfide_oxidation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__DSM-19610; f__DSM-19610; g__Thiogranum; s__Thiogranum longum # dark_sulfur_oxidation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__DSM-19610; f__DSM-19610; g__Thiogranum; s__Thiogranum longum # dark_thiosulfate_oxidation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__DSM-19610; f__DSM-19610; g__Thiogranum; s__Thiogranum longum # dark_oxidation_of_sulfur_compounds (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__DSM-19610; f__DSM-19610; g__Thiogranum; s__Thiogranum longum # manganese_oxidation (0 records): # manganese_respiration (0 records): # ligninolysis (0 records): # fermentation (4 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulforhopalus d__Bacteria; p__Firmicutes_A; c__Clostridia_258483; o__Peptostreptococcales; f__Peptostreptococcaceae_234499; g__Wukongibacter; s__Wukongibacter baidiensis d__Bacteria; p__Firmicutes_A; c__Clostridia_258483; o__Peptostreptococcales; f__Peptostreptococcaceae_256921; g__Tepidibacter_A; s__Tepidibacter_A mesophilus d__Bacteria; p__Spirochaetota; c__Spirochaetia; o__Spirochaetales_E; f__Spirochaetaceae_B_985738; g__Spirochaeta_F; s__Spirochaeta_F psychrophila # aerobic_chemoheterotrophy (4 records): d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Nitriliruptorales; f__Nitriliruptoraceae; g__CSBr16-57R1; s__CSBr16-57R1 sp007116505 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Actibacter d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robiginitalea; s__ d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Amaricoccus; s__ # invertebrate_parasites (0 records): # human_pathogens_septicemia (0 records): # human_pathogens_pneumonia (0 records): # human_pathogens_nosocomia (0 records): # human_pathogens_meningitis (0 records): # human_pathogens_gastroenteritis (0 records): # human_pathogens_diarrhea (0 records): # human_pathogens_all (0 records): # fish_parasites (0 records): # human_gut (0 records): # human_associated (0 records): # mammal_gut (0 records): # animal_parasites_or_symbionts (0 records): # plant_pathogen (0 records): # oil_bioremediation (0 records): # aromatic_hydrocarbon_degradation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_592524; f__Burkholderiaceae_A_580492; g__Ralstonia; s__Ralstonia pickettii_B # aromatic_compound_degradation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_592524; f__Burkholderiaceae_A_580492; g__Ralstonia; s__Ralstonia pickettii_B # aliphatic_non_methane_hydrocarbon_degradation (0 records): # hydrocarbon_degradation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_592524; f__Burkholderiaceae_A_580492; g__Ralstonia; s__Ralstonia pickettii_B # dark_iron_oxidation (0 records): # iron_respiration (0 records): # nitrate_respiration (0 records): # nitrate_reduction (0 records): # nitrogen_respiration (0 records): # fumarate_respiration (0 records): # intracellular_parasites (0 records): # chlorate_reducers (0 records): # predatory_or_exoparasitic (0 records): # chloroplasts (0 records): # nonphotosynthetic_cyanobacteria (0 records): # photosynthetic_cyanobacteria (0 records): # anoxygenic_photoautotrophy_H2_oxidizing (0 records): # anoxygenic_photoautotrophy_S_oxidizing (0 records): # anoxygenic_photoautotrophy_Fe_oxidizing (0 records): # anoxygenic_photoautotrophy (0 records): # oxygenic_photoautotrophy (0 records): # photoautotrophy (0 records): # aerobic_anoxygenic_phototrophy (0 records): # photoheterotrophy (0 records): # phototrophy (0 records): # plastic_degradation (0 records): # ureolysis (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_592524; f__Burkholderiaceae_A_580492; g__Ralstonia; s__Ralstonia pickettii_B # reductive_acetogenesis (0 records): # chemoheterotrophy (26 records): d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanococcoides d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanolobus d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Nitriliruptorales; f__Nitriliruptoraceae; g__CSBr16-57R1; s__CSBr16-57R1 sp007116505 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Actibacter d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Eudoraea; s__Eudoraea adriatica d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robiginitalea; s__ d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Caldilineales; f__Caldilineaceae; g__Bin5; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfococcaceae; g__Desulfococcus; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA2156; g__UBA2156; s__UBA2156 sp002328165 d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulforhopalus d__Bacteria; p__Firmicutes_A; c__Clostridia_258483; o__Peptostreptococcales; f__Peptostreptococcaceae_234499; g__Wukongibacter; s__Wukongibacter baidiensis d__Bacteria; p__Firmicutes_A; c__Clostridia_258483; o__Peptostreptococcales; f__Peptostreptococcaceae_256921; g__Tepidibacter_A; s__Tepidibacter_A mesophilus d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Amaricoccus; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_592524; f__Burkholderiaceae_A_580492; g__Ralstonia; s__Ralstonia pickettii_B d__Bacteria; p__Spirochaetota; c__Spirochaetia; o__Spirochaetales_E; f__Spirochaetaceae_B_985738; g__Spirochaeta_F; s__Spirochaeta_F psychrophila