# Report for collapsed table: /data/shared_data/ZYJ_Amplicon/seagrass/taxonomy/SRR11354736/SRR11354736.faprotax # Collapsed table generated on: 2025.01.10 02:47:00 # Original table: /data/shared_data/ZYJ_Amplicon/seagrass/taxonomy/SRR11354736/SRR11354736.otuna.CAPs.fa.taxonomy.tsv # Details: # Original classical table contained 1925 rows and 3 columns # After filtering rows & columns, obtained a table containing 1925 rows & 2 columns # After (potentially) filtering out records based on name, obtained a table comprising 1925 records & 2 data entries per record # Used command: # /data/software/FAPROTAX/FAPROTAX_1.2.10/collapse_table.py -i /data/shared_data/ZYJ_Amplicon/seagrass/taxonomy/SRR11354736/SRR11354736.otuna.CAPs.fa.taxonomy.tsv -o /data/shared_data/ZYJ_Amplicon/seagrass/taxonomy/SRR11354736/SRR11354736.faprotax -g /data/software/FAPROTAX/FAPROTAX_1.2.10/FAPROTAX.txt -r /data/shared_data/ZYJ_Amplicon/seagrass/taxonomy/SRR11354736/SRR11354736.report.txt -v -d Taxon # # Summary of group assignments: # methanotrophy: 2 records # acetoclastic_methanogenesis: 0 records # methanogenesis_by_disproportionation_of_methyl_groups: 2 records # methanogenesis_using_formate: 0 records # methanogenesis_by_CO2_reduction_with_H2: 0 records # methanogenesis_by_reduction_of_methyl_compounds_with_H2: 1 records # hydrogenotrophic_methanogenesis: 1 records # methanogenesis: 3 records # methanol_oxidation: 0 records # methylotrophy: 3 records # aerobic_ammonia_oxidation: 1 records # aerobic_nitrite_oxidation: 0 records # nitrification: 1 records # sulfate_respiration: 23 records # sulfur_respiration: 0 records # dark_sulfite_oxidation: 1 records # sulfite_respiration: 1 records # thiosulfate_respiration: 1 records # respiration_of_sulfur_compounds: 23 records # arsenate_detoxification: 0 records # arsenate_respiration: 0 records # dissimilatory_arsenate_reduction: 0 records # arsenite_oxidation_detoxification: 0 records # arsenite_oxidation_energy_yielding: 0 records # dissimilatory_arsenite_oxidation: 0 records # anammox: 0 records # nitrate_denitrification: 0 records # nitrite_denitrification: 0 records # nitrous_oxide_denitrification: 0 records # denitrification: 0 records # chitinolysis: 0 records # knallgas_bacteria: 0 records # dark_hydrogen_oxidation: 4 records # nitrogen_fixation: 0 records # nitrate_ammonification: 0 records # nitrite_ammonification: 0 records # nitrite_respiration: 0 records # cellulolysis: 1 records # xylanolysis: 0 records # dark_sulfide_oxidation: 1 records # dark_sulfur_oxidation: 2 records # dark_thiosulfate_oxidation: 1 records # dark_oxidation_of_sulfur_compounds: 2 records # manganese_oxidation: 0 records # manganese_respiration: 1 records # ligninolysis: 0 records # fermentation: 5 records # aerobic_chemoheterotrophy: 19 records # invertebrate_parasites: 0 records # human_pathogens_septicemia: 0 records # human_pathogens_pneumonia: 0 records # human_pathogens_nosocomia: 0 records # human_pathogens_meningitis: 0 records # human_pathogens_gastroenteritis: 0 records # human_pathogens_diarrhea: 0 records # human_pathogens_all: 2 records # fish_parasites: 0 records # human_gut: 0 records # human_associated: 2 records # mammal_gut: 0 records # animal_parasites_or_symbionts: 2 records # plant_pathogen: 0 records # oil_bioremediation: 0 records # aromatic_hydrocarbon_degradation: 1 records # aromatic_compound_degradation: 1 records # aliphatic_non_methane_hydrocarbon_degradation: 0 records # hydrocarbon_degradation: 3 records # dark_iron_oxidation: 0 records # iron_respiration: 1 records # nitrate_respiration: 1 records # nitrate_reduction: 3 records # nitrogen_respiration: 1 records # fumarate_respiration: 0 records # intracellular_parasites: 2 records # chlorate_reducers: 0 records # predatory_or_exoparasitic: 0 records # chloroplasts: 0 records # nonphotosynthetic_cyanobacteria: 1 records # photosynthetic_cyanobacteria: 2 records # anoxygenic_photoautotrophy_H2_oxidizing: 0 records # anoxygenic_photoautotrophy_S_oxidizing: 0 records # anoxygenic_photoautotrophy_Fe_oxidizing: 0 records # anoxygenic_photoautotrophy: 0 records # oxygenic_photoautotrophy: 2 records # photoautotrophy: 2 records # aerobic_anoxygenic_phototrophy: 0 records # photoheterotrophy: 0 records # phototrophy: 2 records # plastic_degradation: 0 records # ureolysis: 1 records # reductive_acetogenesis: 0 records # chemoheterotrophy: 64 records # # Loaded 92 groups comprising 8355 members (5060 unique members) # Established 192 assignments of records to groups # 72 out of 1925 records (3.74026 %) were assigned to at least one group # 1853 out of 1925 records (96.2597 %) could not be assigned to any group (leftovers) # 40 groups were represented (i.e. associated with at least one record) # Detailed group assignments are listed below # methanotrophy (2 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Cycloclasticaceae; g__; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae # acetoclastic_methanogenesis (0 records): # methanogenesis_by_disproportionation_of_methyl_groups (2 records): d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanococcoides d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanolobus # methanogenesis_using_formate (0 records): # methanogenesis_by_CO2_reduction_with_H2 (0 records): # methanogenesis_by_reduction_of_methyl_compounds_with_H2 (1 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # hydrogenotrophic_methanogenesis (1 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # methanogenesis (3 records): d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanococcoides d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanolobus d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # methanol_oxidation (0 records): # methylotrophy (3 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Cycloclasticaceae; g__; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae # aerobic_ammonia_oxidation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_597441; f__Nitrosomonadaceae; g__GCA-2721545; s__GCA-2721545 sp003230615 # aerobic_nitrite_oxidation (0 records): # nitrification (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_597441; f__Nitrosomonadaceae; g__GCA-2721545; s__GCA-2721545 sp003230615 # sulfate_respiration (23 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__; g__; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfococcaceae; g__Desulfococcus; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SURF-3; g__SURF-3; s__SURF-3 sp011390465 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA2156; g__UBA2156; s__UBA2156 sp002328165 d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulforhopalus # sulfur_respiration (0 records): # dark_sulfite_oxidation (1 records): d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Sulfitobacter_E_490551 # sulfite_respiration (1 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulforhopalus # thiosulfate_respiration (1 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulforhopalus # respiration_of_sulfur_compounds (23 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__; g__; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfococcaceae; g__Desulfococcus; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SURF-3; g__SURF-3; s__SURF-3 sp011390465 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA2156; g__UBA2156; s__UBA2156 sp002328165 d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulforhopalus # arsenate_detoxification (0 records): # arsenate_respiration (0 records): # dissimilatory_arsenate_reduction (0 records): # arsenite_oxidation_detoxification (0 records): # arsenite_oxidation_energy_yielding (0 records): # dissimilatory_arsenite_oxidation (0 records): # anammox (0 records): # nitrate_denitrification (0 records): # nitrite_denitrification (0 records): # nitrous_oxide_denitrification (0 records): # denitrification (0 records): # chitinolysis (0 records): # knallgas_bacteria (0 records): # dark_hydrogen_oxidation (4 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulforhopalus d__Bacteria; p__Firmicutes_F; c__Halanaerobiia; o__Halobacteroidales; f__Halobacteroidaceae; g__Orenia_42969; s__Tepidibacillus decaturensis # nitrogen_fixation (0 records): # nitrate_ammonification (0 records): # nitrite_ammonification (0 records): # nitrite_respiration (0 records): # cellulolysis (1 records): d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Chitinophagales; f__Saprospiraceae; g__Lewinella_A # xylanolysis (0 records): # dark_sulfide_oxidation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__DSM-19610; f__DSM-19610; g__Thiogranum; s__Thiogranum longum # dark_sulfur_oxidation (2 records): d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Sulfitobacter_E_490551 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__DSM-19610; f__DSM-19610; g__Thiogranum; s__Thiogranum longum # dark_thiosulfate_oxidation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__DSM-19610; f__DSM-19610; g__Thiogranum; s__Thiogranum longum # dark_oxidation_of_sulfur_compounds (2 records): d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Sulfitobacter_E_490551 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__DSM-19610; f__DSM-19610; g__Thiogranum; s__Thiogranum longum # manganese_oxidation (0 records): # manganese_respiration (1 records): d__Bacteria; p__Firmicutes_F; c__Halanaerobiia; o__Halobacteroidales; f__Halobacteroidaceae; g__Orenia_42969; s__Tepidibacillus decaturensis # ligninolysis (0 records): # fermentation (5 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulforhopalus d__Bacteria; p__Firmicutes_A; c__Clostridia_258483; o__Clostridiales; f__Clostridiaceae_222000; g__Clostridium_AF; s__Clostridium_AF grantii d__Bacteria; p__Firmicutes_A; c__Clostridia_258483; o__Peptostreptococcales; f__Peptostreptococcaceae_256921; g__Peptoclostridium_A; s__Peptoclostridium_A litorale d__Bacteria; p__Firmicutes_F; c__Halanaerobiia; o__Halobacteroidales; f__Halobacteroidaceae; g__Orenia_42969; s__Tepidibacillus decaturensis # aerobic_chemoheterotrophy (19 records): d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Chitinophagales; f__Saprospiraceae; g__Lewinella_A d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Chitinophagales; f__Saprospiraceae; g__Portibacter; s__Portibacter lacus d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Dokdonia d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Gillisia d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Gramella d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Maribacter_A_822709 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Maribacter_A_823795 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Maribacter_A_823795; s__Maribacter_A_823795 aestuarii d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robiginitalea; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Sediminicola_A_822592; s__Sediminicola_A_822592 arcticus d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Winogradskyella d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Winogradskyella; s__Winogradskyella maritima d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Winogradskyella; s__Winogradskyella ouciana d__Bacteria; p__Myxococcota_A_473307; c__Polyangia_463783; o__Polyangiales; f__Polyangiaceae; g__Chondromyces d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Sulfitobacter_E_490551 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Alteraurantiacibacter d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Pontixanthobacter_484640 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomicrobium_484090; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae; g__Vibrio_678715 # invertebrate_parasites (0 records): # human_pathogens_septicemia (0 records): # human_pathogens_pneumonia (0 records): # human_pathogens_nosocomia (0 records): # human_pathogens_meningitis (0 records): # human_pathogens_gastroenteritis (0 records): # human_pathogens_diarrhea (0 records): # human_pathogens_all (2 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Coxiellales; f__Coxiellaceae; g__Coxiella; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Coxiellales; f__Coxiellaceae; g__Coxiella; s__ # fish_parasites (0 records): # human_gut (0 records): # human_associated (2 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Coxiellales; f__Coxiellaceae; g__Coxiella; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Coxiellales; f__Coxiellaceae; g__Coxiella; s__ # mammal_gut (0 records): # animal_parasites_or_symbionts (2 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Coxiellales; f__Coxiellaceae; g__Coxiella; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Coxiellales; f__Coxiellaceae; g__Coxiella; s__ # plant_pathogen (0 records): # oil_bioremediation (0 records): # aromatic_hydrocarbon_degradation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_592524; f__Burkholderiaceae_A_580492; g__Ralstonia; s__Ralstonia pickettii_B # aromatic_compound_degradation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_592524; f__Burkholderiaceae_A_580492; g__Ralstonia; s__Ralstonia pickettii_B # aliphatic_non_methane_hydrocarbon_degradation (0 records): # hydrocarbon_degradation (3 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_592524; f__Burkholderiaceae_A_580492; g__Ralstonia; s__Ralstonia pickettii_B d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Cycloclasticaceae; g__; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae # dark_iron_oxidation (0 records): # iron_respiration (1 records): d__Bacteria; p__Firmicutes_F; c__Halanaerobiia; o__Halobacteroidales; f__Halobacteroidaceae; g__Orenia_42969; s__Tepidibacillus decaturensis # nitrate_respiration (1 records): d__Bacteria; p__Firmicutes_F; c__Halanaerobiia; o__Halobacteroidales; f__Halobacteroidaceae; g__Orenia_42969; s__Tepidibacillus decaturensis # nitrate_reduction (3 records): d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Sediminicola_A_822592; s__Sediminicola_A_822592 arcticus d__Bacteria; p__Firmicutes_F; c__Halanaerobiia; o__Halobacteroidales; f__Halobacteroidaceae; g__Orenia_42969; s__Tepidibacillus decaturensis d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae; g__Vibrio_678715 # nitrogen_respiration (1 records): d__Bacteria; p__Firmicutes_F; c__Halanaerobiia; o__Halobacteroidales; f__Halobacteroidaceae; g__Orenia_42969; s__Tepidibacillus decaturensis # fumarate_respiration (0 records): # intracellular_parasites (2 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Coxiellales; f__Coxiellaceae; g__Coxiella; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Coxiellales; f__Coxiellaceae; g__Coxiella; s__ # chlorate_reducers (0 records): # predatory_or_exoparasitic (0 records): # chloroplasts (0 records): # nonphotosynthetic_cyanobacteria (1 records): d__Bacteria; p__Cyanobacteria; c__Vampirovibrionia; o__Gastranaerophilales; f__UBA9579; g__GWF2-37-15; s__GWF2-37-15 sp001784565 # photosynthetic_cyanobacteria (2 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Nostocaceae_28012; g__Raphidiopsis; s__ d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Xenococcaceae; g__Pleurocapsa; s__Pleurocapsa sp000332195 # anoxygenic_photoautotrophy_H2_oxidizing (0 records): # anoxygenic_photoautotrophy_S_oxidizing (0 records): # anoxygenic_photoautotrophy_Fe_oxidizing (0 records): # anoxygenic_photoautotrophy (0 records): # oxygenic_photoautotrophy (2 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Nostocaceae_28012; g__Raphidiopsis; s__ d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Xenococcaceae; g__Pleurocapsa; s__Pleurocapsa sp000332195 # photoautotrophy (2 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Nostocaceae_28012; g__Raphidiopsis; s__ d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Xenococcaceae; g__Pleurocapsa; s__Pleurocapsa sp000332195 # aerobic_anoxygenic_phototrophy (0 records): # photoheterotrophy (0 records): # phototrophy (2 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Nostocaceae_28012; g__Raphidiopsis; s__ d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Xenococcaceae; g__Pleurocapsa; s__Pleurocapsa sp000332195 # plastic_degradation (0 records): # ureolysis (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_592524; f__Burkholderiaceae_A_580492; g__Ralstonia; s__Ralstonia pickettii_B # reductive_acetogenesis (0 records): # chemoheterotrophy (64 records): d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanococcoides d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanolobus d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Chitinophagales; f__Saprospiraceae; g__Lewinella_A d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Chitinophagales; f__Saprospiraceae; g__Portibacter; s__Portibacter lacus d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Croceivirga_821510; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Dokdonia d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Flavimarina d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Gillisia d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Gramella d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Lutimonas d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Maribacter_A_822709 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Maribacter_A_823795 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Maribacter_A_823795; s__Maribacter_A_823795 aestuarii d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Marinirhabdus; s__Marinirhabdus gelatinilytica d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Muriicola; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Poritiphilus; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robiginitalea; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Sediminicola_A_822592; s__Sediminicola_A_822592 arcticus d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Winogradskyella d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Winogradskyella; s__Winogradskyella maritima d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Winogradskyella; s__Winogradskyella ouciana d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae_409200 d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae_409200; g__Brevefilum; s__Brevefilum fermentans d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae_409200; g__UBA4782; s__UBA4782 sp002403095 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__; g__; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfococcaceae; g__Desulfococcus; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SURF-3; g__SURF-3; s__SURF-3 sp011390465 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA2156; g__UBA2156; s__UBA2156 sp002328165 d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulforhopalus d__Bacteria; p__Firmicutes_A; c__Clostridia_258483; o__Clostridiales; f__Clostridiaceae_222000; g__Clostridium_AF; s__Clostridium_AF grantii d__Bacteria; p__Firmicutes_A; c__Clostridia_258483; o__Peptostreptococcales; f__Peptostreptococcaceae_256921; g__Peptoclostridium_A; s__Peptoclostridium_A litorale d__Bacteria; p__Firmicutes_F; c__Halanaerobiia; o__Halobacteroidales; f__Halobacteroidaceae; g__Orenia_42969; s__Tepidibacillus decaturensis d__Bacteria; p__Myxococcota_A_473307; c__Polyangia_463783; o__Polyangiales; f__Polyangiaceae; g__Chondromyces d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Sulfitobacter_E_490551 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Alteraurantiacibacter d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Pontixanthobacter_484640 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomicrobium_484090; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_592524; f__Burkholderiaceae_A_580492; g__Ralstonia; s__Ralstonia pickettii_B d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae; g__Vibrio_678715 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Cycloclasticaceae; g__; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae