4 Archaea YLA114 26 Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium 39 Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanoregulaceae Candidatus_Methanoregula 60 Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina 20 Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosaetaceae Methanosaeta 16 Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium_beijingense 9 Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanoregulaceae 55 Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanoregulaceae Candidatus_Methanoregula 19 Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosaetaceae Methanosaeta 10 Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanolinea 4 Archaea YLA114 16 Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter 7 Bacteria Bacteroidetes Bacteroidia Bacteroidales SB 13 Bacteria Actinobacteria Acidimicrobiia Acidimicrobiales C111 3 Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanospirillaceae Methanospirillum 7 Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium 11 Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosaetaceae Methanosaeta 23 Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium 3 Bacteria Planctomycetes Planctomycetia B97 8 Bacteria Actinobacteria Acidimicrobiia Acidimicrobiales 5 Bacteria Actinobacteria Acidimicrobiia Acidimicrobiales EB1017 4 Bacteria Actinobacteria Thermoleophilia Solirubrobacterales 19 Bacteria Verrucomicrobia Verrucomicrobiae Verrucomicrobiales Verrucomicrobiaceae Luteolibacter 15 Bacteria Spirochaetes Spirochaetes Spirochaetales Spirochaetaceae Treponema 5 Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcaceae Anaeromyxobacter 4 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae 9 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter 4 Bacteria Planctomycetes Phycisphaerae AKAU3564 29 Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter 15 Bacteria Acidobacteria RB41 Ellin6075 49 Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcaceae Anaeromyxobacter 11 Bacteria Verrucomicrobia 3 Bacteria OP8 OP8_1 SHA 4 Bacteria Bacteroidetes Chitinophagaceae 9 Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Desulfuromonadaceae 36 Bacteria Acidobacteria Acidobacteria iii1 9 Bacteria Spirochaetes Spirochaetes Spirochaetales Spirochaetaceae Treponema 38 Bacteria Proteobacteria Betaproteobacteria SC 124 Archaea Crenarchaeota MCG pGrfC26 9 Bacteria Firmicutes Clostridia Clostridiales Christensenellaceae 12 Bacteria Acidobacteria Acidobacteria iii1 RB40 111 Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Sinobacteraceae 7 Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Sinobacteraceae 27 Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Methylibium 15 Bacteria Proteobacteria Deltaproteobacteria Myxococcales Polyangiaceae 7 Bacteria Proteobacteria Betaproteobacteria Methylophilales Methylophilaceae 5 Bacteria Acidobacteria iii1 SJA 4 Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae 16 Bacteria Verrucomicrobia auto67_4W 4 Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae 3 Bacteria Planctomycetes Planctomycetia Planctomycetales Planctomycetaceae Planctomyces 8 Bacteria Bacteroidetes Bacteroidia Bacteroidales 19 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae 12 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 7 Bacteria Bacteroidetes Bacteroidia Bacteroidales 3 Bacteria WWE1 SHA 13 Bacteria Chloroflexi Anaerolineae Anaerolineales Anaerolinaceae 15 Bacteria Chloroflexi Anaerolineae GCA004 8 Bacteria Chloroflexi Anaerolineae GCA004 4 Bacteria Chloroflexi Anaerolineae Anaerolineales Anaerolinaceae Anaerolinea 39 Bacteria Acidobacteria Acidobacteria iii1 42 Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter 45 Bacteria Verrucomicrobia auto67_4W 11 Bacteria Proteobacteria Betaproteobacteria 16 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Methylocystaceae Methylosinus 26 Bacteria Bacteroidetes Bacteroidia Bacteroidales 3 Bacteria Verrucomicrobia Verrucomicrobiae Verrucomicrobiales Verrucomicrobiaceae 39 Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae 5 Bacteria Bacteroidetes Chitinophagaceae 4 Bacteria Proteobacteria Betaproteobacteria 16 Bacteria Planctomycetes Planctomycetia Pirellulales Pirellulaceae A17 4 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae 3 Bacteria Verrucomicrobia Ellin515 8 Bacteria Verrucomicrobia Chthoniobacter 17 Bacteria Planctomycetes Phycisphaerae CPla 6 Bacteria Planctomycetes Planctomycetia Planctomycetales Planctomycetaceae Planctomyces 3 Bacteria Firmicutes Clostridia Clostridiales 7 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Hyphomonas 35 Bacteria Verrucomicrobia Ellin515 3 Bacteria 28 Bacteria Bacteroidetes Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium 5 Bacteria Planctomycetes Planctomycetia Planctomycetales Planctomycetaceae Planctomyces 6 Bacteria Planctomycetes Phycisphaerae WD2101 8 Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterales Syntrophorhabdaceae 7 Bacteria Proteobacteria Betaproteobacteria Rhodocyclales Rhodocyclaceae 13 Bacteria Bacteroidetes Bacteroidia Bacteroidales 3 Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterales Syntrophorhabdaceae 10 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales 46 Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter 8 Bacteria Actinobacteria Thermoleophilia Gaiellales 6 Bacteria Planctomycetes Planctomycetia Pirellulales Pirellulaceae 4 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae 11 Bacteria Acidobacteria Acidobacteria iii1 9 Bacteria Bacteroidetes Bacteroidia Bacteroidales 21 Bacteria Proteobacteria Betaproteobacteria SC 7 Bacteria Bacteroidetes Sphingobacteriia Sphingobacteriales 24 Bacteria Chloroflexi Anaerolineae Caldilineales Caldilineaceae Caldilinea 58 Bacteria Proteobacteria Betaproteobacteria Hydrogenophilales Hydrogenophilaceae Thiobacillus 28 Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Sulfuricurvum Sulfuricurvum_kujiense 10 Bacteria Proteobacteria Betaproteobacteria Rhodocyclales Rhodocyclaceae 3 Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Kaistobacter 7 Bacteria Bacteroidetes Bacteroidia Bacteroidales 5 Bacteria Planctomycetes Planctomycetia Pirellulales Pirellulaceae 16 Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Sulfuricurvum Sulfuricurvum_kujiense 6 Bacteria Acidobacteria Sva0725 Sva0725 24 Bacteria Verrucomicrobia Ellin515 8 Bacteria Bacteroidetes Bacteroidia Bacteroidales 32 Bacteria Verrucomicrobia auto67_4W 5 Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio_putealis 6 Bacteria Verrucomicrobia Opitutae Opitutales Opitutaceae Opitutus 6 Bacteria Proteobacteria Gammaproteobacteria HTCC2188 HTCC2089 5 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae 4 Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterales Syntrophobacteraceae 18 Bacteria Chlorobi Ignavibacteria Ignavibacteriales Ignavibacteriaceae 4 Bacteria OP8 OP8_2 18 Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterales Syntrophaceae Desulfobacca 7 Bacteria Verrucomicrobia 38 Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae 8 Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterales Syntrophaceae 11 Bacteria Chlorobi Ignavibacteria Ignavibacteriales Ignavibacteriaceae 17 Bacteria Cyanobacteria Chloroplast Stramenopiles 8 Bacteria Spirochaetes Spirochaetes Spirochaetales Spirochaetaceae Treponema 7 Bacteria Bacteroidetes Sphingobacteriia Sphingobacteriales 44 Bacteria Proteobacteria Betaproteobacteria Rhodocyclales Rhodocyclaceae Dechloromonas 14 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae Desulfobulbus 8 Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter 6 Bacteria Proteobacteria Betaproteobacteria SC 13 Archaea Crenarchaeota MCG pGrfC26 11 Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Sinobacteraceae 91 Bacteria Proteobacteria Gammaproteobacteria Methylococcales Crenotrichaceae Crenothrix 31 Bacteria Bacteroidetes Bacteroidia Bacteroidales 29 Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Kaistobacter 10 Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterales Syntrophaceae Desulfobacca 11 Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae 15 Bacteria Chloroflexi Anaerolineae Anaerolineales Anaerolinaceae 8 Bacteria Verrucomicrobia Verrucomicrobiae Verrucomicrobiales Verrucomicrobiaceae Luteolibacter 3 Bacteria Planctomycetes Planctomycetia Pirellulales Pirellulaceae 12 Bacteria Proteobacteria Deltaproteobacteria Desulfarculales Desulfarculaceae 3 Bacteria Verrucomicrobia DA101 32 Bacteria Proteobacteria Betaproteobacteria 4 Bacteria Bacteroidetes Bacteroidia Bacteroidales 4 Bacteria Proteobacteria Deltaproteobacteria Myxococcales 5 Bacteria Acidobacteria Holophagae Holophagales Holophagaceae 29 Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium 6 Bacteria Bacteroidetes Cytophagia Cytophagales Cytophagaceae 3 Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Piscirickettsiaceae 6 Bacteria Planctomycetes Planctomycetia Planctomycetales Planctomycetaceae Planctomyces 4 Bacteria Planctomycetes Planctomycetia Pirellulales Pirellulaceae 3 Bacteria Verrucomicrobia 7 Bacteria Acidobacteria Acidobacteria iii1 mb2424 3 Bacteria Chloroflexi Anaerolineae SBR1031 A4b 17 Bacteria Proteobacteria Betaproteobacteria SC 3 Bacteria Planctomycetes Planctomycetia Gemmatales Gemmataceae Gemmata 9 Bacteria Verrucomicrobia Ellin515 9 Bacteria Acidobacteria Acidobacteria iii1 6 Bacteria Verrucomicrobia S 18 Bacteria Proteobacteria Deltaproteobacteria Myxococcales Nannocystaceae Nannocystis 12 Bacteria Acidobacteria iii1 DS 3 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Devosia 16 Bacteria FCPU426 3 Bacteria Proteobacteria Gammaproteobacteria Methylococcales Methylococcaceae Methylocaldum 11 Bacteria Chloroflexi Ellin6529 8 Bacteria Proteobacteria Betaproteobacteria SC 9 Bacteria Bacteroidetes Bacteroidia Bacteroidales 4 Bacteria Proteobacteria Deltaproteobacteria Myxococcales 5 Bacteria Chlorobi SJA 15 Bacteria Chloroflexi Anaerolineae SJA 8 Bacteria Bacteroidetes Bacteroidia Bacteroidales 12 Bacteria Bacteroidetes Bacteroidia Bacteroidales SB 5 Bacteria Planctomycetes Phycisphaerae CPla 10 Bacteria Firmicutes Clostridia OPB54 4 Bacteria Proteobacteria 11 Bacteria TPD 29 Bacteria Acidobacteria Acidobacteria CCU21 6 Bacteria Acidobacteria RB25 13 Bacteria Proteobacteria Gammaproteobacteria Methylococcales Methylococcaceae Methylocaldum 3 Bacteria Chlorobi BSV26 C20 11 Bacteria Bacteroidetes Bacteroidia Bacteroidales 23 Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterales Syntrophaceae 6 Archaea Crenarchaeota MCG pGrfC26 6 Bacteria Chlorobi BSV26 PK329 10 Bacteria Bacteroidetes Chitinophagaceae 4 Bacteria Bacteroidetes Bacteroidia Bacteroidales 14 Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae 4 Bacteria Proteobacteria Deltaproteobacteria NB1 4 Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales 3 Bacteria Chlorobi 4 Bacteria Firmicutes Clostridia Clostridiales 3 Bacteria Verrucomicrobia Verruco WCHB1 11 Archaea Crenarchaeota MCG 6 Archaea Euryarchaeota Thermoplasmata E2 4 Bacteria Actinobacteria Actinobacteria Actinomycetales 4 Bacteria Planctomycetes Phycisphaerae WD2101 7 Bacteria Chloroflexi Anaerolineae Anaerolineales Anaerolinaceae 5 Bacteria Chloroflexi Anaerolineae GCA004 8 Bacteria Verrucomicrobia 10 Bacteria Actinobacteria Actinobacteria Actinomycetales Intrasporangiaceae Phycicoccus 8 Bacteria Acidobacteria DS 3 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium_mesophilicum 6 Bacteria Verrucomicrobia 5 Bacteria Bacteroidetes Cytophagia Cytophagales Cytophagaceae 6 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae Desulfococcus 6 Bacteria Bacteroidetes Chitinophagaceae 3 Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae 3 Bacteria Chloroflexi Anaerolineae GCA004 7 Bacteria Acidobacteria Acidobacteria iii1 4 Bacteria Chloroflexi Anaerolineae GCA004 4 Bacteria Planctomycetes Planctomycetia Planctomycetales Planctomycetaceae Planctomyces 4 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Devosia 5 Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae 3 Bacteria Verrucomicrobia Verrucomicrobiae Verrucomicrobiales Verrucomicrobiaceae 9 Bacteria Bacteroidetes Cytophagia Cytophagales Cytophagaceae 21 Bacteria Gemmatimonadetes Gemm 18 Bacteria Proteobacteria Betaproteobacteria Ellin6067 47 Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae 110 Bacteria Bacteroidetes Bacteroidia Bacteroidales 4 Bacteria Planctomycetes Phycisphaerae MSBL9 3 Bacteria Acidobacteria Holophagae Holophagales Holophagaceae 3 Bacteria Verrucomicrobia Verrucomicrobiae Verrucomicrobiales Verrucomicrobiaceae 5 Bacteria Acidobacteria Acidobacteria iii1 10 Archaea Euryarchaeota Thermoplasmata E2 11 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobacteraceae Desulfococcus 4 Bacteria 7 Bacteria Verrucomicrobia auto67_4W 4 Bacteria Bacteroidetes Saprospiraceae 19 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae 9 Bacteria Chloroflexi Ellin6529 12 Bacteria Acidobacteria Sva0725 Sva0725 5 Bacteria Proteobacteria Deltaproteobacteria 12 Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Rubrivivax 10 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Hyphomicrobium 9 Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Kaistobacter 6 Bacteria Proteobacteria Gammaproteobacteria Methylococcales Methylococcaceae Methylomonas 17 Bacteria Nitrospirae Nitrospira Nitrospirales LCP 5 Bacteria Planctomycetes Planctomycetia Pirellulales Pirellulaceae 4 Bacteria Spirochaetes Spirochaetes Spirochaetales Spirochaetaceae Treponema 3 Bacteria Spirochaetes Spirochaetes M2PT2 4 Bacteria Proteobacteria Deltaproteobacteria Myxococcales 5 Bacteria Firmicutes Clostridia Clostridiales Christensenellaceae 9 Bacteria Bacteroidetes Bacteroidia Bacteroidales 3 Bacteria Chloroflexi Anaerolineae Anaerolineales Anaerolinaceae 11 Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Sinobacteraceae 5 Bacteria Bacteroidetes Cytophagia Cytophagales Cytophagaceae 5 Bacteria Verrucomicrobia Ellin515 3 Bacteria Verrucomicrobia 5 Bacteria Planctomycetes Planctomycetia Pirellulales Pirellulaceae 4 Bacteria Spirochaetes Sediment SJA 9 Bacteria Chlorobi Ignavibacteria Ignavibacteriales Ignavibacteriaceae 6 Bacteria Proteobacteria Deltaproteobacteria Myxococcales 3 Bacteria Bacteroidetes Chitinophagaceae 8 Archaea YLA114 16 Bacteria Acidobacteria Holophagae Holophagales Holophagaceae Geothrix 3 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 5 Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterales Syntrophobacteraceae 4 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 13 Bacteria Proteobacteria Gammaproteobacteria Alteromonadales OM60 6 Bacteria Spirochaetes Spirochaetes Spirochaetales Spirochaetaceae Treponema 8 Bacteria Actinobacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium 8 Bacteria Proteobacteria Gammaproteobacteria Xanthomonadales Sinobacteraceae 8 Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae 8 Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae