3 Bacteria Proteobacteria Gammaproteobacteria Clostridiales Helicobacteraceae 4 Bacteria Proteobacteria Alphaproteobacteria Bacteroidales Prevotellaceae Prevotella 3 Bacteria Planctomycetes Planctomycetia Pirellulales Pirellulaceae 17 Bacteria Proteobacteria Planctomycetia Planctomycetales Planctomycetaceae Planctomyces 5 Bacteria Proteobacteria Bacteroidia Bacteroidales Halobacteriaceae 8 Bacteria Proteobacteria Deltaproteobacteria Clostridiales Chitinophagaceae 13 Bacteria Proteobacteria Clostridia Clostridiales 3 Bacteria Actinobacteria Bacteroidia Bacteroidales Gaiellaceae 410 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella 15 Bacteria Bacteroidetes Bacteroidia Bacteroidales 6 Bacteria Proteobacteria Bacteroidia Bacteroidales Bacteroidaceae Bacteroides 25 Bacteria Planctomycetes Planctomycetia Bacillales Thermoproteaceae 4 Archaea 15 Archaea Crenarchaeota MCG 438 Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanococcoides 5 Archaea Euryarchaeota Methanobacteria Methanobacteriales 7 Bacteria Proteobacteria Planctomycetia Clostridiales Pirellulaceae 131 Bacteria Proteobacteria Planctomycetia Pirellulales Pirellulaceae 5 Bacteria Proteobacteria Bacteroidia Bacteroidales S24 5 Bacteria Chloroflexi Bacteroidia Bacteroidales Prevotellaceae Prevotella 3 Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae 10 Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium 133 Bacteria Planctomycetes Planctomycetia Planctomycetales Planctomycetaceae Planctomyces 5 Archaea Euryarchaeota Methanobacteria Methanobacteriales 4 Bacteria Proteobacteria Actinobacteria Actinomycetales Micrococcaceae 3 Bacteria Proteobacteria Deltaproteobacteria Bacteroidales Xanthomonadaceae 5 Archaea pMC2A384 10 Bacteria Proteobacteria Planctomycetia Gemmatales Gemmataceae 4 Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae ArcF12 7 Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae 173 Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanolobus 153 Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae 3 Bacteria Proteobacteria Gammaproteobacteria Campylobacterales Helicobacteraceae 9 Bacteria Proteobacteria Planctomycetia Clostridiales Verrucomicrobiaceae 2943 Bacteria Proteobacteria Alphaproteobacteria Actinomycetales Acetobacteraceae Deinococcus 3 Archaea Euryarchaeota Methanobacteria Methanobacteriales 137 Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanolobus 178 Bacteria Proteobacteria Clostridia Clostridiales Rhodospirillaceae 13 Archaea Euryarchaeota Thermoplasmata E2 CCA47 75 Archaea Crenarchaeota MBGB 1229 Archaea Euryarchaeota Thermoplasmata E2 DHVEG 2076 Bacteria Proteobacteria Alphaproteobacteria Bacteroidales Hyphomicrobiaceae Rhodoplanes 2274 Archaea Crenarchaeota MCG 52 Bacteria Proteobacteria Planctomycetia Pirellulales Pirellulaceae 1354 Bacteria Proteobacteria Deltaproteobacteria Bacteroidales Prevotellaceae Prevotella 88 Archaea Crenarchaeota MCG 1029 Archaea Crenarchaeota MCG B10 19 Archaea Crenarchaeota MBGB 249 Bacteria Bacteroidetes Planctomycetia Bacteroidales Chitinophagaceae 221 Bacteria Proteobacteria Deltaproteobacteria Bacteroidales Gemmataceae 51 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus 7 Archaea Crenarchaeota MCG 74 Bacteria Bacteroidetes Bacteroidia Bacteroidales Pirellulaceae 31 Bacteria Proteobacteria Actinobacteria Actinomycetales 2031 Archaea Crenarchaeota MCG B10 370 Bacteria Bacteroidetes Bacteroidia Bacteroidales Flavobacteriaceae Planctomyces 23 Bacteria Proteobacteria Bacteroidia Bacteroidales S24 57 Bacteria Proteobacteria Actinobacteria Actinomycetales Planctomycetaceae Planctomyces 1073 Archaea Crenarchaeota MCG 89 Bacteria Proteobacteria Gammaproteobacteria Rhizobiales Halomonadaceae Candidatus_Portiera 28 Bacteria Proteobacteria Bacteroidia Bacteroidales Helicobacteraceae Bacteroides Sulfuricurvum_kujiense 18 Bacteria Proteobacteria Gammaproteobacteria Actinomycetales Pirellulaceae 896 Archaea Crenarchaeota MCG pGrfC26 165 Archaea Crenarchaeota MCG 416 Archaea Crenarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae Nitrosopumilus 4 Archaea Euryarchaeota Thermoplasmata E2 DHVEG 152 Bacteria Proteobacteria Alphaproteobacteria Actinomycetales mitochondria 194 Bacteria Bacteroidetes Bacilli Bacteroidales Porphyromonadaceae 34 Bacteria Actinobacteria Actinobacteria Actinomycetales Streptomycetaceae Streptomyces 15 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella 169 Archaea Crenarchaeota MCG 176 Archaea Crenarchaeota MCG 57 Archaea Crenarchaeota MCG 962 Bacteria Proteobacteria Alphaproteobacteria Bacteroidales 38 Archaea Crenarchaeota MCG 74 Archaea Euryarchaeota Thermoplasmata E2 DHVEG 72 Bacteria Bacteroidetes Clostridia Bacteroidales Lachnospiraceae Salinibacter 105 Archaea Crenarchaeota MCG 39 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella 14 Bacteria Proteobacteria Gammaproteobacteria Bacteroidales Corynebacteriaceae Corynebacterium 26 Archaea Crenarchaeota MCG 194 Bacteria Proteobacteria Planctomycetia Bacteroidales Gemmataceae 7 Bacteria Bacteroidetes Bacteroidia Bacteroidales 403 Archaea Euryarchaeota Thermoplasmata E2 DHVEG 45 Bacteria Proteobacteria Planctomycetia Bacteroidales Gemmataceae 73 Bacteria Proteobacteria Bacteroidia Bacteroidales Gemmataceae Gemmata 17 Bacteria Bacteroidetes Bacteroidia Bacteroidales Rhodothermaceae 63 Bacteria Proteobacteria Alphaproteobacteria Bacteroidales mitochondria 84 Bacteria Proteobacteria Alphaproteobacteria Pirellulales Pirellulaceae 439 Bacteria Proteobacteria Actinobacteria Actinomycetales 14 Archaea Crenarchaeota MCG 54 Archaea Euryarchaeota Thermoplasmata E2 CCA47 68 Archaea Crenarchaeota MCG 31 Archaea Euryarchaeota Methanobacteria Methanobacteriales 24 Archaea Euryarchaeota Thermoplasmata E2 DHVEG 12 Bacteria Proteobacteria Deltaproteobacteria Bacillales Staphylococcaceae Staphylococcus 12 Archaea Crenarchaeota MCG pGrfC26 146 Archaea Crenarchaeota Thaumarchaeota Nitrososphaerales Nitrososphaeraceae Candidatus_Nitrososphaera 36 Archaea Euryarchaeota Thermoplasmata E2 20c 32 Bacteria Bacteroidetes Bacteroidia Bacteroidales Enterobacteriaceae 55 Bacteria Proteobacteria Bacteroidia Bacteroidales 145 Archaea Crenarchaeota MBGB 11 Archaea Crenarchaeota MCG pGrfC26 7 Archaea Euryarchaeota Thermoplasmata E2 CCA47 18 Archaea Crenarchaeota MBGB 597 Archaea Crenarchaeota MCG 115 Bacteria Proteobacteria Bacteroidia Bacteroidales Prevotellaceae Prevotella 11 Archaea Crenarchaeota MCG pGrfC26 33 Bacteria Proteobacteria Alphaproteobacteria Bacteroidales Spirochaetaceae 61 Archaea Crenarchaeota MBGB 340 Bacteria Proteobacteria Alphaproteobacteria Actinomycetales RFP12 274 Archaea Crenarchaeota MCG 17 Bacteria Proteobacteria Bacilli Bacteroidales Bacillaceae Prevotella 137 Archaea Crenarchaeota MCG pGrfC26 16 Archaea Crenarchaeota MCG 14 Bacteria Bacteroidetes Bacteroidia Bacteroidales Corynebacteriaceae Corynebacterium 13 Bacteria Planctomycetes Planctomycetia Clostridiales Lachnospiraceae Planctomyces 38 Archaea Crenarchaeota MBGB 49 Bacteria Proteobacteria Deltaproteobacteria Clostridiales Clostridiaceae 36 Archaea Crenarchaeota MCG 97 Archaea Euryarchaeota Thermoplasmata E2 DHVEG 28 Bacteria Bacteroidetes Bacteroidia Bacteroidales 3 Archaea Crenarchaeota MHVG 62 Bacteria Proteobacteria Bacteroidia Bacteroidales Prevotellaceae Prevotella 10 Bacteria Proteobacteria Alphaproteobacteria Bacteroidales Corynebacteriaceae Corynebacterium 60 Bacteria Proteobacteria Alphaproteobacteria Actinomycetales Enterobacteriaceae Propionibacterium Propionibacterium_acnes 75 Bacteria Proteobacteria Bacteroidia Bacteroidales Prevotellaceae Prevotella 23 Bacteria Proteobacteria Bacteroidia Bacteroidales 77 Archaea Euryarchaeota Thermoplasmata E2 DHVEG 56 Bacteria Proteobacteria Gammaproteobacteria Bacteroidales Coriobacteriaceae Prevotella 275 Bacteria Proteobacteria Bacilli Bacillales S24 274 Bacteria Proteobacteria Alphaproteobacteria Bacteroidales S24 10 Bacteria Bacteroidetes Bacteroidia Bacteroidales S24 75 Archaea Crenarchaeota MCG 16 Bacteria Bacteroidetes Bacteroidia Bacteroidales CF231 67 Bacteria Proteobacteria Bacteroidia Bacteroidales mitochondria 82 Bacteria Proteobacteria Alphaproteobacteria Bacteroidales Acetobacteraceae Pyrobaculum 51 Bacteria Proteobacteria Clostridia Clostridiales Lachnospiraceae Prevotella 15 Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Staphylococcus 5 Archaea Euryarchaeota Thermoplasmata E2 13 Bacteria Proteobacteria Anaerolineae Burkholderiales 14 Bacteria Firmicutes Bacilli Lactobacillales Bacillaceae Bacillus 9 Archaea Crenarchaeota MBGB 110 Bacteria Proteobacteria Bacteroidia Bacteroidales 21 Archaea Crenarchaeota Thaumarchaeota Nitrososphaerales Nitrososphaeraceae Candidatus_Nitrososphaera 22 Bacteria Proteobacteria Deltaproteobacteria Actinomycetales Erysipelotrichaceae 114 Archaea Euryarchaeota Thermoplasmata E2 55 Archaea Crenarchaeota Thaumarchaeota Nitrososphaerales Nitrososphaeraceae Candidatus_Nitrososphaera Candidatus_Nitrososphaera_SCA1145 72 Archaea Euryarchaeota Thermoplasmata E2 DHVEG 24 Bacteria Proteobacteria Actinobacteria Actinomycetales Sphingomonadaceae Bacteroides 75 Bacteria Proteobacteria Gammaproteobacteria Campylobacterales Helicobacteraceae Prevotella 6 Archaea Crenarchaeota MBGB 26 Bacteria Proteobacteria Bacteroidia Bacteroidales Prevotellaceae Prevotella 4 Archaea Euryarchaeota Methanobacteria Methanobacteriales pMC1 pMC1A4 674 Bacteria Proteobacteria Actinobacteria Actinomycetales mitochondria 4 Archaea Euryarchaeota Thermoplasmata E2 33 Bacteria Proteobacteria Alphaproteobacteria Actinomycetales Gemmataceae 106 Bacteria Proteobacteria Clostridia Clostridiales 50 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella 20 Archaea Euryarchaeota Thermoplasmata E2 TMEG 20 Archaea Crenarchaeota MCG 72 Archaea Crenarchaeota MCG pGrfC26 44 Archaea Crenarchaeota MCG pGrfC26 74 Archaea Euryarchaeota Thermoplasmata E2 DHVEG 16 Archaea Crenarchaeota Thaumarchaeota Nitrososphaerales Nitrososphaeraceae Candidatus_Nitrososphaera Candidatus_Nitrososphaera_SCA1170 8 Bacteria Proteobacteria Actinobacteria Actinomycetales Halomonadaceae Candidatus_Portiera 7 Bacteria Proteobacteria Bacteroidia Bacteroidales Prevotellaceae Prevotella 36 Bacteria Bacteroidetes Alphaproteobacteria Bacteroidales Gemmataceae 6 Bacteria Bacteroidetes Alphaproteobacteria Bacteroidales Lachnospiraceae 68 Bacteria Bacteroidetes Bacteroidia Bacteroidales S24 13 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella 12 Archaea Crenarchaeota MCG 88 Bacteria Bacteroidetes Bacteroidia Bacteroidales 164 Archaea Crenarchaeota MCG pGrfC26 36 Bacteria Proteobacteria Bacteroidia Bacteroidales Helicobacteraceae Sulfurimonas 224 Archaea Euryarchaeota Thermoplasmata E2 DHVEG 7 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Pirellulaceae 14 Bacteria Proteobacteria Deltaproteobacteria Bacteroidales Sulfolobaceae Gemmata 158 Bacteria Proteobacteria Gammaproteobacteria Bacteroidales Bacteroidaceae Bacteroides 6 Bacteria Proteobacteria Gammaproteobacteria Clostridiales Anaerolinaceae Stenotrophomonas 14 Archaea Euryarchaeota Thermoplasmata E2 8 Archaea Euryarchaeota Thermoplasmata E2 21 Archaea Euryarchaeota Thermoplasmata E2 10 Bacteria Chloroflexi Anaerolineae Bacteroidales Brevibacteriaceae Brevibacterium 35 Bacteria Actinobacteria Actinobacteria Actinomycetales Micrococcaceae 11 Archaea Crenarchaeota MCG 142 Archaea Crenarchaeota MCG pGrfC26 341 Archaea Crenarchaeota MCG 309 Archaea Crenarchaeota MCG B10 5 Bacteria Proteobacteria Actinobacteria Actinomycetales Enterobacteriaceae 15 Bacteria Proteobacteria Bacteroidia Bacteroidales Bacteroidaceae Bacteroides 15 Archaea Crenarchaeota MCG 42 Bacteria Proteobacteria Alphaproteobacteria Bacteroidales Chitinophagaceae 10 Bacteria Proteobacteria Gammaproteobacteria Bacteroidales Sulfolobaceae Sulfolobus 12 Archaea Crenarchaeota MCG 189 Bacteria Proteobacteria Gammaproteobacteria Clostridiales Gemmataceae 15 Archaea Crenarchaeota MCG 18 Bacteria Bacteroidetes Bacteroidia Bacteroidales 192 Bacteria Proteobacteria Actinobacteria Actinomycetales Pirellulaceae 111 Bacteria Proteobacteria Bacteroidia Bacteroidales Planctomycetaceae Planctomyces 29 Archaea Euryarchaeota Thermoplasmata E2 DHVEG 6 Bacteria Proteobacteria Bacteroidia Bacteroidales Prevotellaceae Prevotella 33 Bacteria Proteobacteria Alphaproteobacteria Actinomycetales Dehalococcoidaceae 20 Archaea Crenarchaeota MCG 95 Bacteria Bacteroidetes Bacteroidia Bacteroidales 13 Bacteria Firmicutes Clostridia Clostridiales Halobacteriaceae Prevotella 109 Archaea Crenarchaeota MCG 618 Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacillaceae 16 Archaea Crenarchaeota MCG 43 Bacteria Bacteroidetes Bacteroidia Bacteroidales 7 Bacteria Proteobacteria Clostridia Clostridiales Enterobacteriaceae 3 Bacteria Proteobacteria Deltaproteobacteria Bacteroidales Aerococcaceae 19 Bacteria Actinobacteria Clostridia Clostridiales 81 Bacteria Bacteroidetes Clostridia Clostridiales Prevotellaceae Prevotella 74 Archaea Euryarchaeota Thermoplasmata E2 33 Archaea Crenarchaeota MBGA 7 Archaea Crenarchaeota MCG 3 Bacteria Proteobacteria Alphaproteobacteria Bacteroidales Verrucomicrobiaceae Prevotella 15 Archaea Crenarchaeota Thaumarchaeota Nitrososphaerales Nitrososphaeraceae Candidatus_Nitrososphaera 4 Bacteria Firmicutes Actinobacteria Clostridiales Ruminococcaceae 4 Bacteria Firmicutes Clostridia Clostridiales 17 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 7 Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae 62 Archaea Euryarchaeota DSEG ArcA07 9 Archaea Euryarchaeota DSEG ArcA07 9 Bacteria Proteobacteria Bacteroidia Bacteroidales 8 Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae 11 Bacteria Actinobacteria Actinobacteria Actinomycetales Prevotellaceae Prevotella 4 Archaea Euryarchaeota DSEG ArcA07 15 Archaea Euryarchaeota DSEG ArcA07 8 Archaea Euryarchaeota DSEG ArcA07 4 Bacteria Bacteroidetes Clostridia Clostridiales Pirellulaceae 17 Bacteria Bacteroidetes Bacteroidia Bacteroidales S24 3 Bacteria Proteobacteria Alphaproteobacteria Bacteroidales Prevotellaceae Prevotella 3 Bacteria Firmicutes Clostridia Clostridiales 4 Bacteria Firmicutes Bacilli Clostridiales Ruminococcaceae Streptococcus 5 Bacteria Proteobacteria Betaproteobacteria Burkholderiales 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales Lachnospiraceae 4 Bacteria Bacteroidetes Chloroplast Bacteroidales 7 Bacteria Proteobacteria Betaproteobacteria Clostridiales Ruminococcaceae 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales Cytophagaceae 4 Bacteria Proteobacteria Bacteroidia Bacteroidales Prevotellaceae Prevotella 4 Bacteria Bacteroidetes Bacteroidia Bacteroidales Cytophagaceae 8 Bacteria Proteobacteria Bacteroidia Bacteroidales Isosphaeraceae 7 Bacteria Proteobacteria Deltaproteobacteria Clostridiales Ruminococcaceae 10 Bacteria Planctomycetes Planctomycetia Planctomycetales Planctomycetaceae Planctomyces 5 Bacteria Deinococci Deinococcales Trueperaceae B