# Report for collapsed table: /data/shared_data/ZYJ_Amplicon/seagrass/taxonomy/SRR15068632/SRR15068632.faprotax # Collapsed table generated on: 2025.01.10 03:08:45 # Original table: /data/shared_data/ZYJ_Amplicon/seagrass/taxonomy/SRR15068632/SRR15068632.otuna.CAPs.fa.taxonomy.tsv # Details: # Original classical table contained 1021 rows and 3 columns # After filtering rows & columns, obtained a table containing 1021 rows & 2 columns # After (potentially) filtering out records based on name, obtained a table comprising 1021 records & 2 data entries per record # Used command: # /data/software/FAPROTAX/FAPROTAX_1.2.10/collapse_table.py -i /data/shared_data/ZYJ_Amplicon/seagrass/taxonomy/SRR15068632/SRR15068632.otuna.CAPs.fa.taxonomy.tsv -o /data/shared_data/ZYJ_Amplicon/seagrass/taxonomy/SRR15068632/SRR15068632.faprotax -g /data/software/FAPROTAX/FAPROTAX_1.2.10/FAPROTAX.txt -r /data/shared_data/ZYJ_Amplicon/seagrass/taxonomy/SRR15068632/SRR15068632.report.txt -v -d Taxon # # Summary of group assignments: # methanotrophy: 1 records # acetoclastic_methanogenesis: 0 records # methanogenesis_by_disproportionation_of_methyl_groups: 0 records # methanogenesis_using_formate: 0 records # methanogenesis_by_CO2_reduction_with_H2: 0 records # methanogenesis_by_reduction_of_methyl_compounds_with_H2: 1 records # hydrogenotrophic_methanogenesis: 1 records # methanogenesis: 1 records # methanol_oxidation: 0 records # methylotrophy: 2 records # aerobic_ammonia_oxidation: 0 records # aerobic_nitrite_oxidation: 0 records # nitrification: 0 records # sulfate_respiration: 4 records # sulfur_respiration: 0 records # dark_sulfite_oxidation: 0 records # sulfite_respiration: 0 records # thiosulfate_respiration: 0 records # respiration_of_sulfur_compounds: 4 records # arsenate_detoxification: 0 records # arsenate_respiration: 0 records # dissimilatory_arsenate_reduction: 0 records # arsenite_oxidation_detoxification: 0 records # arsenite_oxidation_energy_yielding: 0 records # dissimilatory_arsenite_oxidation: 0 records # anammox: 0 records # nitrate_denitrification: 0 records # nitrite_denitrification: 0 records # nitrous_oxide_denitrification: 0 records # denitrification: 0 records # chitinolysis: 0 records # knallgas_bacteria: 0 records # dark_hydrogen_oxidation: 1 records # nitrogen_fixation: 0 records # nitrate_ammonification: 0 records # nitrite_ammonification: 0 records # nitrite_respiration: 0 records # cellulolysis: 0 records # xylanolysis: 0 records # dark_sulfide_oxidation: 0 records # dark_sulfur_oxidation: 0 records # dark_thiosulfate_oxidation: 0 records # dark_oxidation_of_sulfur_compounds: 0 records # manganese_oxidation: 0 records # manganese_respiration: 0 records # ligninolysis: 0 records # fermentation: 1 records # aerobic_chemoheterotrophy: 6 records # invertebrate_parasites: 0 records # human_pathogens_septicemia: 0 records # human_pathogens_pneumonia: 0 records # human_pathogens_nosocomia: 0 records # human_pathogens_meningitis: 0 records # human_pathogens_gastroenteritis: 0 records # human_pathogens_diarrhea: 0 records # human_pathogens_all: 2 records # fish_parasites: 0 records # human_gut: 0 records # human_associated: 2 records # mammal_gut: 0 records # animal_parasites_or_symbionts: 2 records # plant_pathogen: 0 records # oil_bioremediation: 0 records # aromatic_hydrocarbon_degradation: 1 records # aromatic_compound_degradation: 1 records # aliphatic_non_methane_hydrocarbon_degradation: 0 records # hydrocarbon_degradation: 2 records # dark_iron_oxidation: 0 records # iron_respiration: 0 records # nitrate_respiration: 0 records # nitrate_reduction: 1 records # nitrogen_respiration: 0 records # fumarate_respiration: 0 records # intracellular_parasites: 1 records # chlorate_reducers: 0 records # predatory_or_exoparasitic: 0 records # chloroplasts: 0 records # nonphotosynthetic_cyanobacteria: 0 records # photosynthetic_cyanobacteria: 1 records # anoxygenic_photoautotrophy_H2_oxidizing: 0 records # anoxygenic_photoautotrophy_S_oxidizing: 1 records # anoxygenic_photoautotrophy_Fe_oxidizing: 0 records # anoxygenic_photoautotrophy: 1 records # oxygenic_photoautotrophy: 1 records # photoautotrophy: 2 records # aerobic_anoxygenic_phototrophy: 0 records # photoheterotrophy: 0 records # phototrophy: 2 records # plastic_degradation: 0 records # ureolysis: 1 records # reductive_acetogenesis: 0 records # chemoheterotrophy: 14 records # # Loaded 92 groups comprising 8355 members (5060 unique members) # Established 57 assignments of records to groups # 18 out of 1021 records (1.76298 %) were assigned to at least one group # 1003 out of 1021 records (98.237 %) could not be assigned to any group (leftovers) # 26 groups were represented (i.e. associated with at least one record) # Detailed group assignments are listed below # methanotrophy (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Cycloclasticaceae; g__; s__ # acetoclastic_methanogenesis (0 records): # methanogenesis_by_disproportionation_of_methyl_groups (0 records): # methanogenesis_using_formate (0 records): # methanogenesis_by_CO2_reduction_with_H2 (0 records): # methanogenesis_by_reduction_of_methyl_compounds_with_H2 (1 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # hydrogenotrophic_methanogenesis (1 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # methanogenesis (1 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # methanol_oxidation (0 records): # methylotrophy (2 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Cycloclasticaceae; g__; s__ # aerobic_ammonia_oxidation (0 records): # aerobic_nitrite_oxidation (0 records): # nitrification (0 records): # sulfate_respiration (4 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16; s__S5133MH16 sp004193595 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA2174_A_458268; g__UBA2174; s__ # sulfur_respiration (0 records): # dark_sulfite_oxidation (0 records): # sulfite_respiration (0 records): # thiosulfate_respiration (0 records): # respiration_of_sulfur_compounds (4 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16; s__S5133MH16 sp004193595 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA2174_A_458268; g__UBA2174; s__ # arsenate_detoxification (0 records): # arsenate_respiration (0 records): # dissimilatory_arsenate_reduction (0 records): # arsenite_oxidation_detoxification (0 records): # arsenite_oxidation_energy_yielding (0 records): # dissimilatory_arsenite_oxidation (0 records): # anammox (0 records): # nitrate_denitrification (0 records): # nitrite_denitrification (0 records): # nitrous_oxide_denitrification (0 records): # denitrification (0 records): # chitinolysis (0 records): # knallgas_bacteria (0 records): # dark_hydrogen_oxidation (1 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina # nitrogen_fixation (0 records): # nitrate_ammonification (0 records): # nitrite_ammonification (0 records): # nitrite_respiration (0 records): # cellulolysis (0 records): # xylanolysis (0 records): # dark_sulfide_oxidation (0 records): # dark_sulfur_oxidation (0 records): # dark_thiosulfate_oxidation (0 records): # dark_oxidation_of_sulfur_compounds (0 records): # manganese_oxidation (0 records): # manganese_respiration (0 records): # ligninolysis (0 records): # fermentation (1 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina # aerobic_chemoheterotrophy (6 records): d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Nitriliruptorales; f__Nitriliruptoraceae; g__CSBr16-57R1; s__CSBr16-57R1 sp007116505 d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Nitriliruptorales; f__Nitriliruptoraceae; g__CSBr16-57R1; s__CSBr16-57R1 sp007116505 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_900709; g__Fulvivirga d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Actibacter; s__Actibacter haliotis d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robiginitalea; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae; g__Vibrio_678715 # invertebrate_parasites (0 records): # human_pathogens_septicemia (0 records): # human_pathogens_pneumonia (0 records): # human_pathogens_nosocomia (0 records): # human_pathogens_meningitis (0 records): # human_pathogens_gastroenteritis (0 records): # human_pathogens_diarrhea (0 records): # human_pathogens_all (2 records): d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Propionibacteriales; f__Propionibacteriaceae; g__Cutibacterium; s__Cutibacterium acnes d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Coxiellales; f__Coxiellaceae; g__Coxiella; s__ # fish_parasites (0 records): # human_gut (0 records): # human_associated (2 records): d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Propionibacteriales; f__Propionibacteriaceae; g__Cutibacterium; s__Cutibacterium acnes d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Coxiellales; f__Coxiellaceae; g__Coxiella; s__ # mammal_gut (0 records): # animal_parasites_or_symbionts (2 records): d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Propionibacteriales; f__Propionibacteriaceae; g__Cutibacterium; s__Cutibacterium acnes d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Coxiellales; f__Coxiellaceae; g__Coxiella; s__ # plant_pathogen (0 records): # oil_bioremediation (0 records): # aromatic_hydrocarbon_degradation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_592524; f__Burkholderiaceae_A_580492; g__Ralstonia; s__Ralstonia pickettii_B # aromatic_compound_degradation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_592524; f__Burkholderiaceae_A_580492; g__Ralstonia; s__Ralstonia pickettii_B # aliphatic_non_methane_hydrocarbon_degradation (0 records): # hydrocarbon_degradation (2 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_592524; f__Burkholderiaceae_A_580492; g__Ralstonia; s__Ralstonia pickettii_B d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Cycloclasticaceae; g__; s__ # dark_iron_oxidation (0 records): # iron_respiration (0 records): # nitrate_respiration (0 records): # nitrate_reduction (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae; g__Vibrio_678715 # nitrogen_respiration (0 records): # fumarate_respiration (0 records): # intracellular_parasites (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Coxiellales; f__Coxiellaceae; g__Coxiella; s__ # chlorate_reducers (0 records): # predatory_or_exoparasitic (0 records): # chloroplasts (0 records): # nonphotosynthetic_cyanobacteria (0 records): # photosynthetic_cyanobacteria (1 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 # anoxygenic_photoautotrophy_H2_oxidizing (0 records): # anoxygenic_photoautotrophy_S_oxidizing (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Chromatiales_602660; f__Chromatiaceae_602660; g__Halochromatium # anoxygenic_photoautotrophy_Fe_oxidizing (0 records): # anoxygenic_photoautotrophy (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Chromatiales_602660; f__Chromatiaceae_602660; g__Halochromatium # oxygenic_photoautotrophy (1 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 # photoautotrophy (2 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Chromatiales_602660; f__Chromatiaceae_602660; g__Halochromatium # aerobic_anoxygenic_phototrophy (0 records): # photoheterotrophy (0 records): # phototrophy (2 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Chromatiales_602660; f__Chromatiaceae_602660; g__Halochromatium # plastic_degradation (0 records): # ureolysis (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_592524; f__Burkholderiaceae_A_580492; g__Ralstonia; s__Ralstonia pickettii_B # reductive_acetogenesis (0 records): # chemoheterotrophy (14 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Nitriliruptorales; f__Nitriliruptoraceae; g__CSBr16-57R1; s__CSBr16-57R1 sp007116505 d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Nitriliruptorales; f__Nitriliruptoraceae; g__CSBr16-57R1; s__CSBr16-57R1 sp007116505 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_900709; g__Fulvivirga d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Actibacter; s__Actibacter haliotis d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Eudoraea; s__Eudoraea adriatica d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robiginitalea; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16; s__S5133MH16 sp004193595 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA2174_A_458268; g__UBA2174; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_592524; f__Burkholderiaceae_A_580492; g__Ralstonia; s__Ralstonia pickettii_B d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae; g__Vibrio_678715 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Cycloclasticaceae; g__; s__