8 Bacteria Proteobacteria Clostridia Clostridiales Tremblayaceae 157 Bacteria Proteobacteria Alphaproteobacteria Bacillales Helicobacteraceae Paenibacillus 20 Bacteria Proteobacteria Gammaproteobacteria Bacillales S24 1787 Bacteria Proteobacteria Alphaproteobacteria Campylobacterales Helicobacteraceae 3 Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Lactobacillus 66 Bacteria Proteobacteria Deltaproteobacteria Actinomycetales Spirochaetaceae Treponema 2570 Bacteria Proteobacteria Alphaproteobacteria Actinomycetales Acetobacteraceae 178 Bacteria Proteobacteria Clostridia Clostridiales mitochondria 199 Bacteria Bacteroidetes Gammaproteobacteria Flavobacteriales Flavobacteriaceae 6 Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas 4 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 110 Bacteria Bacteroidetes Clostridia Clostridiales 4 Bacteria Firmicutes Bacteroidia Bacteroidales Pyrobaculum 3 Bacteria Acidobacteria Bacteroidia Bacteroidales Spirochaetaceae 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella_copri 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales Coriobacteriaceae 4 Bacteria Firmicutes Clostridia Clostridiales 9 Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides 53 Bacteria Proteobacteria Bacteroidia Bacteroidales mitochondria 10 Bacteria Bacteroidetes Clostridia Clostridiales 2996 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 3 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 97 Bacteria Firmicutes Clostridia Clostridiales 2877 Bacteria Cyanobacteria Chloroplast Streptophyta 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales 3 Bacteria Acidobacteria Bacteroidia Bacteroidales 16 Bacteria Proteobacteria Gammaproteobacteria Flavobacteriales Flavobacteriaceae 11 Bacteria Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Ureaplasma 11 Bacteria Bacteroidetes Clostridia Clostridiales Flavobacteriaceae 57 Bacteria Firmicutes Clostridia Clostridiales 11 Bacteria Bacteroidetes Alphaproteobacteria Rickettsiales mitochondria 4 Bacteria Bacteroidetes Bacteroidia Bacteroidales Halobacteriaceae 3 Bacteria Actinobacteria Actinobacteria Actinomycetales BS11 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales 4 Bacteria Proteobacteria Clostridia Clostridiales 32 Bacteria Proteobacteria Phycisphaerae MSBL9 3 Bacteria Firmicutes Clostridia Clostridiales Pelagibacteraceae 25 Bacteria Bacteroidetes Bacteroidia Bacteroidales 3 Bacteria Proteobacteria Gammaproteobacteria Pirellulales Pirellulaceae 6 Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Mycoplasmataceae Mycoplasma 24 Bacteria Cyanobacteria Chloroplast Streptophyta 3 Bacteria Proteobacteria Alphaproteobacteria Clostridiales Ruminococcaceae 3 Bacteria Proteobacteria Gammaproteobacteria Actinomycetales Prevotellaceae Prevotella 3 Bacteria Bacteroidetes Clostridia Clostridiales Pirellulaceae 6 Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae Butyrivibrio 15 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 5 Bacteria Firmicutes Clostridia Clostridiales 8 Bacteria Bacteroidetes Bacteroidia Bacteroidales Spirochaetaceae Treponema 25 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 8 Bacteria Bacteroidetes Clostridia Clostridiales 28 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 4 Bacteria Proteobacteria Clostridia Clostridiales Flavobacteriaceae 10 Bacteria Proteobacteria Bacteroidia Bacteroidales mitochondria 30 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 4 Bacteria Proteobacteria Bacilli Actinomycetales Propionibacteriaceae Propionibacterium Propionibacterium_acnes 6 Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus 5 Bacteria Firmicutes Bacilli Bacillales Alicyclobacillaceae 19 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 3 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales mitochondria 41 Bacteria Firmicutes Clostridia Clostridiales mitochondria 41 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 28 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 33 Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae 15 Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae 4 Bacteria Proteobacteria Bacilli Clostridiales Gemellaceae Gemella 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales S24 9 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 29 Bacteria Bacteroidetes Alphaproteobacteria Rickettsiales mitochondria 19 Bacteria Bacteroidetes Bacteroidia Bacteroidales 4 Bacteria Bacteroidetes Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium 4 Bacteria Bacteroidetes Bacteroidia Bacteroidales Ruminococcaceae 3 Bacteria Firmicutes Bacteroidia Bacteroidales Lachnospiraceae Lactobacillus 5 Bacteria Firmicutes Clostridia Clostridiales Isosphaeraceae 4 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella 13 Bacteria Firmicutes Bacilli Clostridiales Bacillaceae Bacillus 7 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 33 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae 137 Bacteria Proteobacteria Alphaproteobacteria Clostridiales Rhodobacteraceae Paenibacillus 3 Bacteria Proteobacteria Alphaproteobacteria Bacteroidales mitochondria 4 Bacteria Bacteroidetes Bacteroidia Bacteroidales S24 3 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 13 Bacteria Proteobacteria Alphaproteobacteria Campylobacterales Helicobacteraceae 3 Bacteria Proteobacteria Clostridia Clostridiales 947 Bacteria Proteobacteria Bacilli Bacillales Bacillaceae Staphylococcus 579 Bacteria Firmicutes Actinobacteria Actinomycetales 5 Bacteria Firmicutes Clostridia Clostridiales DA101 55 Bacteria Firmicutes Alphaproteobacteria Clostridiales Veillonellaceae 6 Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides 3 Bacteria Euryarchaeota Bacteroidia Bacteroidales Halobacteriaceae 5 Bacteria Proteobacteria Bacteroidia Bacteroidales Prevotellaceae Prevotella 5 Bacteria Firmicutes Clostridia Clostridiales 3 Bacteria Proteobacteria Deltaproteobacteria Bacteroidales Ruminococcaceae 4 Bacteria Acidobacteria Acidobacteria iii1 46 Bacteria Cyanobacteria Chloroplast Streptophyta 4 Bacteria Proteobacteria Alphaproteobacteria Clostridiales Gemmataceae 9 Bacteria Proteobacteria Betaproteobacteria Burkholderiales Oxalobacteraceae Ralstonia 647 Bacteria Cyanobacteria Chloroplast Streptophyta 3 Bacteria Spirochaetes Spirochaetes Bacteroidales Sphaerochaetaceae Sphaerochaeta 420 Bacteria Cyanobacteria Chloroplast Streptophyta 428 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 14 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas_stutzeri 31 Bacteria Proteobacteria Bacteroidia Bacteroidales Spirochaetaceae Prevotella 3 Bacteria Actinobacteria Actinobacteria Actinomycetales Xanthomonadaceae 3 Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae 4 Bacteria Actinobacteria Thermoleophilia Gaiellales Gaiellaceae 446 Bacteria Proteobacteria Alphaproteobacteria Actinomycetales Helicobacteraceae 28 Bacteria Proteobacteria Alphaproteobacteria Bacteroidales Bacteroidaceae Bacteroides Bacteroides_fragilis 3 Bacteria Chloroflexi Ktedonobacteria Thermogemmatisporales Thermogemmatisporaceae 3 Bacteria Proteobacteria Bacteroidia Bacteroidales 3 Bacteria Planctomycetes Actinobacteria Actinomycetales 3 Bacteria Proteobacteria Bacteroidia Bacteroidales 486 Bacteria Proteobacteria Alphaproteobacteria Campylobacterales Helicobacteraceae Sulfuricurvum Sulfuricurvum_kujiense 6 Bacteria Gemmatimonadetes Gemmatimonadetes Gemmatimonadales 3 Bacteria Proteobacteria Bacilli Bacillales Bacillaceae 4 Bacteria Proteobacteria Bacilli Bacteroidales Chthonomonadaceae 3 Bacteria Firmicutes Clostridia Clostridiales 20 Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Cellvibrio 11 Bacteria Cyanobacteria Chloroplast Streptophyta 27 Bacteria Bacteroidetes Bacteroidia Bacteroidales Staphylococcaceae Staphylococcus 3 Bacteria Proteobacteria Spirochaetes Bacteroidales Spirochaetaceae Treponema 339 Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Enterococcaceae Enterococcus 11 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Klebsiella 1041 Bacteria Cyanobacteria Chloroplast Streptophyta 4 Bacteria Chloroflexi Chloroflexi Chloroflexales S24 1049 Bacteria Cyanobacteria Chloroplast Streptophyta 7 Bacteria Firmicutes Clostridia Clostridiales 3 Bacteria Proteobacteria Clostridia Clostridiales 0319 3 Bacteria Proteobacteria Clostridia Clostridiales Lachnospiraceae 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales Spirochaetaceae Treponema 21 Bacteria Actinobacteria Actinobacteria Actinomycetales Nocardioidaceae 53 Bacteria Firmicutes Clostridia Clostridiales 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales 22 Bacteria Bacteroidetes Bacteroidia Bacteroidales 4 Bacteria Actinobacteria Actinobacteria Actinomycetales Actinomycetaceae Actinomyces 4 Bacteria Firmicutes Opitutae Clostridiales Puniceicoccaceae 10 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus 6 Bacteria Firmicutes Bacilli Bacillales Gemmataceae 14 Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Sulfuricurvum Sulfuricurvum_kujiense 308 Bacteria Proteobacteria Alphaproteobacteria Campylobacterales Helicobacteraceae Sulfuricurvum Sulfuricurvum_kujiense 5 Bacteria Proteobacteria Bacilli Bacteroidales Gemmataceae Streptococcus 3 Bacteria Firmicutes Bacilli Clostridiales Lactobacillaceae 3 Bacteria Proteobacteria Bacteroidia Bacteroidales Prevotellaceae Prevotella 4 Bacteria Proteobacteria Clostridia Clostridiales 23 Bacteria Actinobacteria Actinobacteria Actinomycetales Nocardioidaceae Aeromicrobium 3 Bacteria Euryarchaeota Bacteroidia Bacteroidales Fibrobacteraceae Fibrobacteres 246 Bacteria Firmicutes Alphaproteobacteria Bacillales Paenibacillaceae Paenibacillus 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella 8 Bacteria Proteobacteria Alphaproteobacteria Lactobacillales Enterococcaceae Enterococcus 5 Bacteria Proteobacteria Actinobacteria Actinomycetales Propionibacteriaceae Propionibacterium 870 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales S24 3 Bacteria Firmicutes Clostridia Clostridiales Finegoldia 4 Bacteria Proteobacteria Betaproteobacteria Burkholderiales Oxalobacteraceae 53 Bacteria Proteobacteria Chloroplast 3 Bacteria Proteobacteria Alphaproteobacteria Clostridiales Acetobacteraceae Roseomonas Roseomonas_mucosa 111 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 4 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella 16 Bacteria Proteobacteria Gammaproteobacteria Bacteroidales Helicobacteraceae 92 Bacteria Proteobacteria Bacilli Bacillales Bacillaceae Bacillus 11 Bacteria Proteobacteria Anaerolineae Clostridiales Marine_group_II 4 Bacteria Proteobacteria Bacteroidia Bacteroidales Actinomycetaceae Actinomyces 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella 3 Bacteria Actinobacteria Actinobacteria Actinomycetales Streptomycetaceae Streptomyces 295 Bacteria Proteobacteria Alphaproteobacteria Actinomycetales Helicobacteraceae 46 Bacteria Proteobacteria Alphaproteobacteria Campylobacterales Helicobacteraceae Sulfurimonas 266 Bacteria Proteobacteria Actinobacteria Actinomycetales Propionibacteriaceae Propionibacterium Propionibacterium_acnes 3 Bacteria Bacteroidetes Gammaproteobacteria Bacteroidales Pasteurellaceae Haemophilus Haemophilus_parainfluenzae 12 Bacteria Bacteroidetes Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Sulfuricurvum_kujiense 134 Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Roseomonas Roseomonas_mucosa 59 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 16 Bacteria Firmicutes Acidobacteria iii1 3 Bacteria Actinobacteria Actinobacteria Actinomycetales Nocardiaceae Nocardia 292 Bacteria Cyanobacteria Chloroplast Streptophyta 3 Bacteria Planctomycetes Spirochaetes Spirochaetales Spirochaetaceae Treponema 17 Bacteria Bacteroidetes Gammaproteobacteria Sphingobacteriales 11 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Paracoccus Paracoccus_aminovorans 4 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Methylocystaceae 11 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales 77 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales 3 Bacteria Bacteroidetes Planctomycetia Bacteroidales Prevotellaceae Prevotella 20 Bacteria Actinobacteria Actinobacteria Actinomycetales Propionibacteriaceae Propionibacterium 5 Bacteria Proteobacteria Deltaproteobacteria Bacillales Sphingomonadaceae 5 Bacteria Actinobacteria Acidimicrobiia Acidimicrobiales 9 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus_marisflavi 5 Bacteria Bacteroidetes Rhodothermaceae 59 Bacteria Cyanobacteria Chloroplast Rickettsiales mitochondria 51 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 20 Bacteria Proteobacteria Alphaproteobacteria Caulobacterales Caulobacteraceae 9 Bacteria Cyanobacteria Chloroplast Streptophyta 31 Bacteria Cyanobacteria Chloroplast Streptophyta 142 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 3 Bacteria Planctomycetes Planctomycetia Gemmatales Isosphaeraceae 6 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Devosia 4 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales 25 Bacteria Verrucomicrobia Verruco Clostridiales Sulfobacillaceae Sulfobacillus 21 Bacteria Firmicutes Clostridia Clostridiales Halobacteriaceae 10 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium 304 Bacteria Crenarchaeota Chloroplast Streptophyta 3 Bacteria Actinobacteria Bacilli Actinomycetales 413 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 34 Archaea Crenarchaeota MCG pGrfC26 12 Bacteria FBP 26 Archaea Euryarchaeota Thermoplasmata E2 Marine_group_II 3 Archaea Crenarchaeota MCG E2 Marine_group_II 14 Archaea Crenarchaeota MCG 43 Bacteria Proteobacteria Gammaproteobacteria 12 Bacteria Proteobacteria Alphaproteobacteria Campylobacterales Helicobacteraceae 22 Bacteria Actinobacteria Acidimicrobiia Acidimicrobiales wb1_P06 123 Bacteria Cyanobacteria Nostocophycideae Nostocales Nostocaceae 49 Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Methylobacteriaceae 27 Bacteria Cyanobacteria Chloroplast Streptophyta