# Report for collapsed table: /data/shared_data/ZYJ_Amplicon/salt_marsh/taxonomy/SRR1756950/SRR1756950.faprotax # Collapsed table generated on: 2025.01.10 01:25:17 # Original table: /data/shared_data/ZYJ_Amplicon/salt_marsh/taxonomy/SRR1756950/SRR1756950.otuna.CAPs.fa.taxonomy.tsv # Details: # Original classical table contained 2260 rows and 3 columns # After filtering rows & columns, obtained a table containing 2260 rows & 2 columns # After (potentially) filtering out records based on name, obtained a table comprising 2260 records & 2 data entries per record # Used command: # /data/software/FAPROTAX/FAPROTAX_1.2.10/collapse_table.py -i /data/shared_data/ZYJ_Amplicon/salt_marsh/taxonomy/SRR1756950/SRR1756950.otuna.CAPs.fa.taxonomy.tsv -o /data/shared_data/ZYJ_Amplicon/salt_marsh/taxonomy/SRR1756950/SRR1756950.faprotax -g /data/software/FAPROTAX/FAPROTAX_1.2.10/FAPROTAX.txt -r /data/shared_data/ZYJ_Amplicon/salt_marsh/taxonomy/SRR1756950/SRR1756950.report.txt -v -d Taxon # # Summary of group assignments: # methanotrophy: 0 records # acetoclastic_methanogenesis: 0 records # methanogenesis_by_disproportionation_of_methyl_groups: 0 records # methanogenesis_using_formate: 0 records # methanogenesis_by_CO2_reduction_with_H2: 0 records # methanogenesis_by_reduction_of_methyl_compounds_with_H2: 0 records # hydrogenotrophic_methanogenesis: 0 records # methanogenesis: 0 records # methanol_oxidation: 1 records # methylotrophy: 1 records # aerobic_ammonia_oxidation: 0 records # aerobic_nitrite_oxidation: 0 records # nitrification: 0 records # sulfate_respiration: 23 records # sulfur_respiration: 2 records # dark_sulfite_oxidation: 0 records # sulfite_respiration: 1 records # thiosulfate_respiration: 1 records # respiration_of_sulfur_compounds: 25 records # arsenate_detoxification: 0 records # arsenate_respiration: 0 records # dissimilatory_arsenate_reduction: 0 records # arsenite_oxidation_detoxification: 0 records # arsenite_oxidation_energy_yielding: 0 records # dissimilatory_arsenite_oxidation: 0 records # anammox: 1 records # nitrate_denitrification: 0 records # nitrite_denitrification: 0 records # nitrous_oxide_denitrification: 0 records # denitrification: 0 records # chitinolysis: 2 records # knallgas_bacteria: 0 records # dark_hydrogen_oxidation: 5 records # nitrogen_fixation: 1 records # nitrate_ammonification: 0 records # nitrite_ammonification: 0 records # nitrite_respiration: 1 records # cellulolysis: 2 records # xylanolysis: 2 records # dark_sulfide_oxidation: 4 records # dark_sulfur_oxidation: 1 records # dark_thiosulfate_oxidation: 4 records # dark_oxidation_of_sulfur_compounds: 5 records # manganese_oxidation: 0 records # manganese_respiration: 1 records # ligninolysis: 0 records # fermentation: 7 records # aerobic_chemoheterotrophy: 22 records # invertebrate_parasites: 0 records # human_pathogens_septicemia: 0 records # human_pathogens_pneumonia: 0 records # human_pathogens_nosocomia: 0 records # human_pathogens_meningitis: 0 records # human_pathogens_gastroenteritis: 0 records # human_pathogens_diarrhea: 0 records # human_pathogens_all: 0 records # fish_parasites: 0 records # human_gut: 0 records # human_associated: 0 records # mammal_gut: 0 records # animal_parasites_or_symbionts: 0 records # plant_pathogen: 0 records # oil_bioremediation: 1 records # aromatic_hydrocarbon_degradation: 1 records # aromatic_compound_degradation: 4 records # aliphatic_non_methane_hydrocarbon_degradation: 0 records # hydrocarbon_degradation: 2 records # dark_iron_oxidation: 1 records # iron_respiration: 2 records # nitrate_respiration: 2 records # nitrate_reduction: 4 records # nitrogen_respiration: 3 records # fumarate_respiration: 0 records # intracellular_parasites: 0 records # chlorate_reducers: 0 records # predatory_or_exoparasitic: 0 records # chloroplasts: 0 records # nonphotosynthetic_cyanobacteria: 0 records # photosynthetic_cyanobacteria: 4 records # anoxygenic_photoautotrophy_H2_oxidizing: 0 records # anoxygenic_photoautotrophy_S_oxidizing: 0 records # anoxygenic_photoautotrophy_Fe_oxidizing: 0 records # anoxygenic_photoautotrophy: 1 records # oxygenic_photoautotrophy: 4 records # photoautotrophy: 5 records # aerobic_anoxygenic_phototrophy: 0 records # photoheterotrophy: 1 records # phototrophy: 5 records # plastic_degradation: 0 records # ureolysis: 0 records # reductive_acetogenesis: 0 records # chemoheterotrophy: 72 records # # Loaded 92 groups comprising 8355 members (5060 unique members) # Established 224 assignments of records to groups # 86 out of 2260 records (3.80531 %) were assigned to at least one group # 2174 out of 2260 records (96.1947 %) could not be assigned to any group (leftovers) # 37 groups were represented (i.e. associated with at least one record) # Detailed group assignments are listed below # methanotrophy (0 records): # acetoclastic_methanogenesis (0 records): # methanogenesis_by_disproportionation_of_methyl_groups (0 records): # methanogenesis_using_formate (0 records): # methanogenesis_by_CO2_reduction_with_H2 (0 records): # methanogenesis_by_reduction_of_methyl_compounds_with_H2 (0 records): # hydrogenotrophic_methanogenesis (0 records): # methanogenesis (0 records): # methanol_oxidation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Nitrosococcales; f__Methylophagaceae; g__Methylophaga # methylotrophy (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Nitrosococcales; f__Methylophagaceae; g__Methylophaga # aerobic_ammonia_oxidation (0 records): # aerobic_nitrite_oxidation (0 records): # nitrification (0 records): # sulfate_respiration (23 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfobacter d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfatitalea d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina; s__Desulfosarcina alkanivorans d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulfopila_A_450135; s__Desulfopila_A_450135 sp010646885 # sulfur_respiration (2 records): d__Bacteria; p__Desulfobacterota_G_459546; c__Desulfuromonadia; o__Desulfuromonadales; f__Geoalkalibacteraceae; g__Geoalkalibacter_A; s__Geoalkalibacter_A subterraneus d__Bacteria; p__Desulfobacterota_G_459546; c__Desulfuromonadia; o__Desulfuromonadales; f__Geopsychrobacteraceae; g__Geopsychrobacter; s__Geopsychrobacter electrodiphilus # dark_sulfite_oxidation (0 records): # sulfite_respiration (1 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfobacter # thiosulfate_respiration (1 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfobacter # respiration_of_sulfur_compounds (25 records): d__Bacteria; p__Desulfobacterota_G_459546; c__Desulfuromonadia; o__Desulfuromonadales; f__Geoalkalibacteraceae; g__Geoalkalibacter_A; s__Geoalkalibacter_A subterraneus d__Bacteria; p__Desulfobacterota_G_459546; c__Desulfuromonadia; o__Desulfuromonadales; f__Geopsychrobacteraceae; g__Geopsychrobacter; s__Geopsychrobacter electrodiphilus d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfobacter d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfatitalea d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina; s__Desulfosarcina alkanivorans d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulfopila_A_450135; s__Desulfopila_A_450135 sp010646885 # arsenate_detoxification (0 records): # arsenate_respiration (0 records): # dissimilatory_arsenate_reduction (0 records): # arsenite_oxidation_detoxification (0 records): # arsenite_oxidation_energy_yielding (0 records): # dissimilatory_arsenite_oxidation (0 records): # anammox (1 records): d__Bacteria; p__Planctomycetota; c__Brocadiae; o__Brocadiales; f__Brocadiaceae; g__Kuenenia; s__Kuenenia stuttgartiensis # nitrate_denitrification (0 records): # nitrite_denitrification (0 records): # nitrous_oxide_denitrification (0 records): # denitrification (0 records): # chitinolysis (2 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_650612; f__Cellvibrionaceae; g__Microbulbifer d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_650612; f__Cellvibrionaceae; g__Microbulbifer # knallgas_bacteria (0 records): # dark_hydrogen_oxidation (5 records): d__Bacteria; p__Desulfobacterota_G_459546; c__Desulfuromonadia; o__Desulfuromonadales; f__Geoalkalibacteraceae; g__Geoalkalibacter_A; s__Geoalkalibacter_A subterraneus d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfatitalea d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina; s__Desulfosarcina alkanivorans d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulfopila_A_450135; s__Desulfopila_A_450135 sp010646885 # nitrogen_fixation (1 records): d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodospirillales_505895; f__Magnetospiraceae; g__Magnetospira # nitrate_ammonification (0 records): # nitrite_ammonification (0 records): # nitrite_respiration (1 records): d__Bacteria; p__Planctomycetota; c__Brocadiae; o__Brocadiales; f__Brocadiaceae; g__Kuenenia; s__Kuenenia stuttgartiensis # cellulolysis (2 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_650612; f__Cellvibrionaceae; g__Microbulbifer d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_650612; f__Cellvibrionaceae; g__Microbulbifer # xylanolysis (2 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_650612; f__Cellvibrionaceae; g__Microbulbifer d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_650612; f__Cellvibrionaceae; g__Microbulbifer # dark_sulfide_oxidation (4 records): d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Sulfurimonadaceae; g__Sulfuricurvum; s__Sulfuricurvum kujiense_A_474120 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodospirillales_505895; f__Magnetovibrionaceae; g__Magnetovibrio; s__Magnetovibrio blakemorei d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodospirillales_505895; f__Magnetovibrionaceae; g__Magnetovibrio; s__Magnetovibrio blakemorei d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Beggiatoales; f__Beggiatoaceae; g__Thiomargarita; s__Thiomargarita namibiensis # dark_sulfur_oxidation (1 records): d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Sulfurimonadaceae; g__Sulfuricurvum; s__Sulfuricurvum kujiense_A_474120 # dark_thiosulfate_oxidation (4 records): d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Sulfurimonadaceae; g__Sulfuricurvum; s__Sulfuricurvum kujiense_A_474120 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodospirillales_505895; f__Magnetospiraceae; g__Magnetospira d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodospirillales_505895; f__Magnetovibrionaceae; g__Magnetovibrio; s__Magnetovibrio blakemorei d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodospirillales_505895; f__Magnetovibrionaceae; g__Magnetovibrio; s__Magnetovibrio blakemorei # dark_oxidation_of_sulfur_compounds (5 records): d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Sulfurimonadaceae; g__Sulfuricurvum; s__Sulfuricurvum kujiense_A_474120 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodospirillales_505895; f__Magnetospiraceae; g__Magnetospira d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodospirillales_505895; f__Magnetovibrionaceae; g__Magnetovibrio; s__Magnetovibrio blakemorei d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodospirillales_505895; f__Magnetovibrionaceae; g__Magnetovibrio; s__Magnetovibrio blakemorei d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Beggiatoales; f__Beggiatoaceae; g__Thiomargarita; s__Thiomargarita namibiensis # manganese_oxidation (0 records): # manganese_respiration (1 records): d__Bacteria; p__Desulfobacterota_G_459546; c__Desulfuromonadia; o__Desulfuromonadales; f__Geoalkalibacteraceae; g__Geoalkalibacter_A; s__Geoalkalibacter_A subterraneus # ligninolysis (0 records): # fermentation (7 records): d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Muricauda_A_821778 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Muricauda_A_821778 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina; s__Desulfosarcina alkanivorans d__Bacteria; p__Firmicutes_A; c__Clostridia_258483; o__Clostridiales; f__Clostridiaceae_222000; g__Clostridium_T; s__Clostridium_T gasigenes d__Bacteria; p__Firmicutes_A; c__Clostridia_258483; o__Peptostreptococcales; f__Peptostreptococcaceae_256921 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Rhodovulum d__Bacteria; p__Verrucomicrobiota; c__Verrucomicrobiae; o__Opitutales; f__Opitutaceae; g__Alterococcus; s__Alterococcus agarolyticus # aerobic_chemoheterotrophy (22 records): d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_900709; g__Fulvivirga d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_900752; g__Marinoscillum; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_900752; g__UBA7330; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_902343; g__JAAUQL01; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_902343; g__JAAUQL01; s__JAAUQL01 sp012033595 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_902343; g__JAAUQL01; s__JAAUQL01 sp012033595 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Muricauda_A_821778 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Muricauda_A_821778 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robiginitalea; s__Robiginitalea sediminis d__Bacteria; p__Firmicutes_D; c__Bacilli; o__Tumebacillales; f__Tumebacillaceae; g__Tumebacillus_A; s__Tumebacillus_A ginsengisoli d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales_A_501582; f__Stappiaceae; g__Roseibium_497070 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales_A_504721; f__Hyphomicrobiaceae; g__Hyphomicrobium_A d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Rhodovulum d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodospirillales_505895; f__Thalassospiraceae; g__Thalassospira d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Kordiimonadaceae_483020; g__Kordiimonas_483017; s__Kordiimonas gwangyangensis d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Kordiimonadaceae_483020; g__Kordiimonas_483017; s__Kordiimonas lacus d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae; g__Vibrio_678715; s__Vibrio azureus d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae; g__Vibrio_678715; s__Vibrio proteolyticus # invertebrate_parasites (0 records): # human_pathogens_septicemia (0 records): # human_pathogens_pneumonia (0 records): # human_pathogens_nosocomia (0 records): # human_pathogens_meningitis (0 records): # human_pathogens_gastroenteritis (0 records): # human_pathogens_diarrhea (0 records): # human_pathogens_all (0 records): # fish_parasites (0 records): # human_gut (0 records): # human_associated (0 records): # mammal_gut (0 records): # animal_parasites_or_symbionts (0 records): # plant_pathogen (0 records): # oil_bioremediation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_641035; f__DSM-6294_637238; g__Thalassolituus; s__Thalassolituus oleivorans # aromatic_hydrocarbon_degradation (1 records): d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Kordiimonadaceae_483020; g__Kordiimonas_483017; s__Kordiimonas gwangyangensis # aromatic_compound_degradation (4 records): d__Bacteria; p__Desulfobacterota_G_459546; c__Desulfuromonadia; o__Desulfuromonadales; f__Geopsychrobacteraceae; g__Geopsychrobacter; s__Geopsychrobacter electrodiphilus d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Kordiimonadaceae_483020; g__Kordiimonas_483017; s__Kordiimonas gwangyangensis d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_650612; f__Cellvibrionaceae; g__Microbulbifer d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_650612; f__Cellvibrionaceae; g__Microbulbifer # aliphatic_non_methane_hydrocarbon_degradation (0 records): # hydrocarbon_degradation (2 records): d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Kordiimonadaceae_483020; g__Kordiimonas_483017; s__Kordiimonas gwangyangensis d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_641030; f__Halomonadaceae_641030; g__Halomonas_E_640244 # dark_iron_oxidation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_597441; f__Gallionellaceae; g__Gallionella; s__Gallionella acididurans # iron_respiration (2 records): d__Bacteria; p__Desulfobacterota_G_459546; c__Desulfuromonadia; o__Desulfuromonadales; f__Geoalkalibacteraceae; g__Geoalkalibacter_A; s__Geoalkalibacter_A subterraneus d__Bacteria; p__Desulfobacterota_G_459546; c__Desulfuromonadia; o__Desulfuromonadales; f__Geopsychrobacteraceae; g__Geopsychrobacter; s__Geopsychrobacter electrodiphilus # nitrate_respiration (2 records): d__Bacteria; p__Desulfobacterota_G_459546; c__Desulfuromonadia; o__Desulfuromonadales; f__Geoalkalibacteraceae; g__Geoalkalibacter_A; s__Geoalkalibacter_A subterraneus d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Beggiatoales; f__Beggiatoaceae; g__Thiomargarita; s__Thiomargarita namibiensis # nitrate_reduction (4 records): d__Bacteria; p__Desulfobacterota_G_459546; c__Desulfuromonadia; o__Desulfuromonadales; f__Geoalkalibacteraceae; g__Geoalkalibacter_A; s__Geoalkalibacter_A subterraneus d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Beggiatoales; f__Beggiatoaceae; g__Thiomargarita; s__Thiomargarita namibiensis d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae; g__Vibrio_678715; s__Vibrio azureus d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae; g__Vibrio_678715; s__Vibrio proteolyticus # nitrogen_respiration (3 records): d__Bacteria; p__Desulfobacterota_G_459546; c__Desulfuromonadia; o__Desulfuromonadales; f__Geoalkalibacteraceae; g__Geoalkalibacter_A; s__Geoalkalibacter_A subterraneus d__Bacteria; p__Planctomycetota; c__Brocadiae; o__Brocadiales; f__Brocadiaceae; g__Kuenenia; s__Kuenenia stuttgartiensis d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Beggiatoales; f__Beggiatoaceae; g__Thiomargarita; s__Thiomargarita namibiensis # fumarate_respiration (0 records): # intracellular_parasites (0 records): # chlorate_reducers (0 records): # predatory_or_exoparasitic (0 records): # chloroplasts (0 records): # nonphotosynthetic_cyanobacteria (0 records): # photosynthetic_cyanobacteria (4 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Microcoleaceae; g__Microcoleus # anoxygenic_photoautotrophy_H2_oxidizing (0 records): # anoxygenic_photoautotrophy_S_oxidizing (0 records): # anoxygenic_photoautotrophy_Fe_oxidizing (0 records): # anoxygenic_photoautotrophy (1 records): d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Rhodovulum # oxygenic_photoautotrophy (4 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Microcoleaceae; g__Microcoleus # photoautotrophy (5 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Microcoleaceae; g__Microcoleus d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Rhodovulum # aerobic_anoxygenic_phototrophy (0 records): # photoheterotrophy (1 records): d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Rhodovulum # phototrophy (5 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Microcoleaceae; g__Microcoleus d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Rhodovulum # plastic_degradation (0 records): # ureolysis (0 records): # reductive_acetogenesis (0 records): # chemoheterotrophy (72 records): d__Bacteria; p__Acidobacteriota; c__Vicinamibacteria; o__Vicinamibacterales; f__SCN-69-37; g__SCN-69-37; s__SCN-69-37 sp001724025 d__Bacteria; p__Acidobacteriota; c__Vicinamibacteria; o__Vicinamibacterales; f__UBA2999; g__; s__ d__Bacteria; p__Acidobacteriota; c__Vicinamibacteria; o__Vicinamibacterales; f__UBA2999; g__; s__ d__Bacteria; p__Acidobacteriota; c__Vicinamibacteria; o__Vicinamibacterales; f__UBA2999; g__Gp6-AA45 d__Bacteria; p__Acidobacteriota; c__Vicinamibacteria; o__Vicinamibacterales; f__UBA2999; g__Gp6-AA45; s__ d__Bacteria; p__Acidobacteriota; c__Vicinamibacteria; o__Vicinamibacterales; f__UBA2999; g__WHSN01; s__WHSN01 sp902826465 d__Bacteria; p__Acidobacteriota; c__Vicinamibacteria; o__Vicinamibacterales; f__UBA8438 d__Bacteria; p__Acidobacteriota; c__Vicinamibacteria; o__Vicinamibacterales; f__UBA8438 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_900709; g__Fulvivirga d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_900752; g__Marinoscillum; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_900752; g__UBA7330; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_902343; g__JAAUQL01; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_902343; g__JAAUQL01; s__JAAUQL01 sp012033595 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_902343; g__JAAUQL01; s__JAAUQL01 sp012033595 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Muricauda_A_821778 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Muricauda_A_821778 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robiginitalea; s__Robiginitalea sediminis d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae_409200 d__Bacteria; p__Desulfobacterota_G_459546; c__Desulfuromonadia; o__Desulfuromonadales; f__Geopsychrobacteraceae; g__Geopsychrobacter; s__Geopsychrobacter electrodiphilus d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfobacter d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfatitalea d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina; s__Desulfosarcina alkanivorans d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Firmicutes_A; c__Clostridia_258483; o__Clostridiales; f__Clostridiaceae_222000; g__Clostridium_T; s__Clostridium_T gasigenes d__Bacteria; p__Firmicutes_A; c__Clostridia_258483; o__Peptostreptococcales; f__Peptostreptococcaceae_256921 d__Bacteria; p__Firmicutes_D; c__Bacilli; o__Tumebacillales; f__Tumebacillaceae; g__Tumebacillus_A; s__Tumebacillus_A ginsengisoli d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales_A_501582; f__Stappiaceae; g__Roseibium_497070 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales_A_504721; f__Hyphomicrobiaceae; g__Hyphomicrobium_A d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Rhodovulum d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodospirillales_505895; f__Thalassospiraceae; g__Thalassospira d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Kordiimonadaceae_483020; g__Kordiimonas_483017; s__Kordiimonas gwangyangensis d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Kordiimonadaceae_483020; g__Kordiimonas_483017; s__Kordiimonas lacus d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae; g__Vibrio_678715; s__Vibrio azureus d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae; g__Vibrio_678715; s__Vibrio proteolyticus d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Nitrosococcales; f__Methylophagaceae; g__Methylophaga d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_641030; f__Halomonadaceae_641030; g__Halomonas_E_640244 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_641035; f__DSM-6294_637238; g__Thalassolituus; s__Thalassolituus oleivorans d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_650612; f__Cellvibrionaceae; g__Microbulbifer d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_650612; f__Cellvibrionaceae; g__Microbulbifer d__Bacteria; p__Verrucomicrobiota; c__Verrucomicrobiae; o__Opitutales; f__Opitutaceae; g__Alterococcus; s__Alterococcus agarolyticus