# Report for collapsed table: /data/shared_data/ZYJ_Amplicon/mangrove/taxonomy/SRR19630934/SRR19630934.faprotax # Collapsed table generated on: 2025.01.09 22:33:16 # Original table: /data/shared_data/ZYJ_Amplicon/mangrove/taxonomy/SRR19630934/SRR19630934.otuna.CAPs.fa.taxonomy.tsv # Details: # Original classical table contained 1111 rows and 3 columns # After filtering rows & columns, obtained a table containing 1111 rows & 2 columns # After (potentially) filtering out records based on name, obtained a table comprising 1111 records & 2 data entries per record # Used command: # /data/software/FAPROTAX/FAPROTAX_1.2.10/collapse_table.py -i /data/shared_data/ZYJ_Amplicon/mangrove/taxonomy/SRR19630934/SRR19630934.otuna.CAPs.fa.taxonomy.tsv -o /data/shared_data/ZYJ_Amplicon/mangrove/taxonomy/SRR19630934/SRR19630934.faprotax -g /data/software/FAPROTAX/FAPROTAX_1.2.10/FAPROTAX.txt -r /data/shared_data/ZYJ_Amplicon/mangrove/taxonomy/SRR19630934/SRR19630934.report.txt -v -d Taxon # # Summary of group assignments: # methanotrophy: 0 records # acetoclastic_methanogenesis: 0 records # methanogenesis_by_disproportionation_of_methyl_groups: 2 records # methanogenesis_using_formate: 0 records # methanogenesis_by_CO2_reduction_with_H2: 0 records # methanogenesis_by_reduction_of_methyl_compounds_with_H2: 1 records # hydrogenotrophic_methanogenesis: 1 records # methanogenesis: 3 records # methanol_oxidation: 0 records # methylotrophy: 1 records # aerobic_ammonia_oxidation: 0 records # aerobic_nitrite_oxidation: 0 records # nitrification: 0 records # sulfate_respiration: 13 records # sulfur_respiration: 0 records # dark_sulfite_oxidation: 0 records # sulfite_respiration: 1 records # thiosulfate_respiration: 1 records # respiration_of_sulfur_compounds: 13 records # arsenate_detoxification: 0 records # arsenate_respiration: 0 records # dissimilatory_arsenate_reduction: 0 records # arsenite_oxidation_detoxification: 0 records # arsenite_oxidation_energy_yielding: 0 records # dissimilatory_arsenite_oxidation: 0 records # anammox: 0 records # nitrate_denitrification: 0 records # nitrite_denitrification: 0 records # nitrous_oxide_denitrification: 0 records # denitrification: 0 records # chitinolysis: 0 records # knallgas_bacteria: 0 records # dark_hydrogen_oxidation: 1 records # nitrogen_fixation: 0 records # nitrate_ammonification: 0 records # nitrite_ammonification: 0 records # nitrite_respiration: 0 records # cellulolysis: 0 records # xylanolysis: 0 records # dark_sulfide_oxidation: 1 records # dark_sulfur_oxidation: 1 records # dark_thiosulfate_oxidation: 1 records # dark_oxidation_of_sulfur_compounds: 1 records # manganese_oxidation: 0 records # manganese_respiration: 0 records # ligninolysis: 0 records # fermentation: 4 records # aerobic_chemoheterotrophy: 5 records # invertebrate_parasites: 0 records # human_pathogens_septicemia: 0 records # human_pathogens_pneumonia: 0 records # human_pathogens_nosocomia: 0 records # human_pathogens_meningitis: 0 records # human_pathogens_gastroenteritis: 0 records # human_pathogens_diarrhea: 0 records # human_pathogens_all: 0 records # fish_parasites: 0 records # human_gut: 0 records # human_associated: 0 records # mammal_gut: 0 records # animal_parasites_or_symbionts: 0 records # plant_pathogen: 0 records # oil_bioremediation: 0 records # aromatic_hydrocarbon_degradation: 0 records # aromatic_compound_degradation: 0 records # aliphatic_non_methane_hydrocarbon_degradation: 0 records # hydrocarbon_degradation: 0 records # dark_iron_oxidation: 0 records # iron_respiration: 0 records # nitrate_respiration: 0 records # nitrate_reduction: 0 records # nitrogen_respiration: 0 records # fumarate_respiration: 0 records # intracellular_parasites: 0 records # chlorate_reducers: 0 records # predatory_or_exoparasitic: 0 records # chloroplasts: 0 records # nonphotosynthetic_cyanobacteria: 2 records # photosynthetic_cyanobacteria: 2 records # anoxygenic_photoautotrophy_H2_oxidizing: 0 records # anoxygenic_photoautotrophy_S_oxidizing: 0 records # anoxygenic_photoautotrophy_Fe_oxidizing: 0 records # anoxygenic_photoautotrophy: 0 records # oxygenic_photoautotrophy: 2 records # photoautotrophy: 2 records # aerobic_anoxygenic_phototrophy: 0 records # photoheterotrophy: 0 records # phototrophy: 2 records # plastic_degradation: 0 records # ureolysis: 1 records # reductive_acetogenesis: 0 records # chemoheterotrophy: 30 records # # Loaded 92 groups comprising 8355 members (5060 unique members) # Established 91 assignments of records to groups # 35 out of 1111 records (3.15032 %) were assigned to at least one group # 1076 out of 1111 records (96.8497 %) could not be assigned to any group (leftovers) # 23 groups were represented (i.e. associated with at least one record) # Detailed group assignments are listed below # methanotrophy (0 records): # acetoclastic_methanogenesis (0 records): # methanogenesis_by_disproportionation_of_methyl_groups (2 records): d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanococcoides d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanolobus # methanogenesis_using_formate (0 records): # methanogenesis_by_CO2_reduction_with_H2 (0 records): # methanogenesis_by_reduction_of_methyl_compounds_with_H2 (1 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # hydrogenotrophic_methanogenesis (1 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # methanogenesis (3 records): d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanococcoides d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanolobus d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # methanol_oxidation (0 records): # methylotrophy (1 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # aerobic_ammonia_oxidation (0 records): # aerobic_nitrite_oxidation (0 records): # nitrification (0 records): # sulfate_respiration (13 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfobacter d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfotignum; s__Desulfotignum sp011390335 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfovibrionia; o__Desulfovibrionales; f__Desulfovibrionaceae; g__Desulfocurvus; s__ # sulfur_respiration (0 records): # dark_sulfite_oxidation (0 records): # sulfite_respiration (1 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfobacter # thiosulfate_respiration (1 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfobacter # respiration_of_sulfur_compounds (13 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfobacter d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfotignum; s__Desulfotignum sp011390335 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfovibrionia; o__Desulfovibrionales; f__Desulfovibrionaceae; g__Desulfocurvus; s__ # arsenate_detoxification (0 records): # arsenate_respiration (0 records): # dissimilatory_arsenate_reduction (0 records): # arsenite_oxidation_detoxification (0 records): # arsenite_oxidation_energy_yielding (0 records): # dissimilatory_arsenite_oxidation (0 records): # anammox (0 records): # nitrate_denitrification (0 records): # nitrite_denitrification (0 records): # nitrous_oxide_denitrification (0 records): # denitrification (0 records): # chitinolysis (0 records): # knallgas_bacteria (0 records): # dark_hydrogen_oxidation (1 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina # nitrogen_fixation (0 records): # nitrate_ammonification (0 records): # nitrite_ammonification (0 records): # nitrite_respiration (0 records): # cellulolysis (0 records): # xylanolysis (0 records): # dark_sulfide_oxidation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__DSM-19610; f__DSM-19610; g__Thiogranum; s__Thiogranum longum # dark_sulfur_oxidation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__DSM-19610; f__DSM-19610; g__Thiogranum; s__Thiogranum longum # dark_thiosulfate_oxidation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__DSM-19610; f__DSM-19610; g__Thiogranum; s__Thiogranum longum # dark_oxidation_of_sulfur_compounds (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__DSM-19610; f__DSM-19610; g__Thiogranum; s__Thiogranum longum # manganese_oxidation (0 records): # manganese_respiration (0 records): # ligninolysis (0 records): # fermentation (4 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfotignum; s__Desulfotignum sp011390335 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfovibrionia; o__Desulfovibrionales; f__Desulfovibrionaceae; g__Desulfocurvus; s__ d__Bacteria; p__Firmicutes_A; c__Clostridia_258483; o__Peptostreptococcales; f__Peptostreptococcaceae_256921; g__Peptoclostridium_A; s__Peptoclostridium_A litorale # aerobic_chemoheterotrophy (5 records): d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Actibacter; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robiginitalea; s__ d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales_A_502138; f__Devosiaceae; g__Maritalea; s__ d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales_A_504721; f__Methyloligellaceae; g__; s__Filomicrobium fusiforme # invertebrate_parasites (0 records): # human_pathogens_septicemia (0 records): # human_pathogens_pneumonia (0 records): # human_pathogens_nosocomia (0 records): # human_pathogens_meningitis (0 records): # human_pathogens_gastroenteritis (0 records): # human_pathogens_diarrhea (0 records): # human_pathogens_all (0 records): # fish_parasites (0 records): # human_gut (0 records): # human_associated (0 records): # mammal_gut (0 records): # animal_parasites_or_symbionts (0 records): # plant_pathogen (0 records): # oil_bioremediation (0 records): # aromatic_hydrocarbon_degradation (0 records): # aromatic_compound_degradation (0 records): # aliphatic_non_methane_hydrocarbon_degradation (0 records): # hydrocarbon_degradation (0 records): # dark_iron_oxidation (0 records): # iron_respiration (0 records): # nitrate_respiration (0 records): # nitrate_reduction (0 records): # nitrogen_respiration (0 records): # fumarate_respiration (0 records): # intracellular_parasites (0 records): # chlorate_reducers (0 records): # predatory_or_exoparasitic (0 records): # chloroplasts (0 records): # nonphotosynthetic_cyanobacteria (2 records): d__Bacteria; p__Cyanobacteria; c__Vampirovibrionia; o__Gastranaerophilales d__Bacteria; p__Cyanobacteria; c__Vampirovibrionia; o__Gastranaerophilales # photosynthetic_cyanobacteria (2 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__PCC-6307; f__Cyanobiaceae d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__PCC-6307; f__Cyanobiaceae # anoxygenic_photoautotrophy_H2_oxidizing (0 records): # anoxygenic_photoautotrophy_S_oxidizing (0 records): # anoxygenic_photoautotrophy_Fe_oxidizing (0 records): # anoxygenic_photoautotrophy (0 records): # oxygenic_photoautotrophy (2 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__PCC-6307; f__Cyanobiaceae d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__PCC-6307; f__Cyanobiaceae # photoautotrophy (2 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__PCC-6307; f__Cyanobiaceae d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__PCC-6307; f__Cyanobiaceae # aerobic_anoxygenic_phototrophy (0 records): # photoheterotrophy (0 records): # phototrophy (2 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__PCC-6307; f__Cyanobiaceae d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__PCC-6307; f__Cyanobiaceae # plastic_degradation (0 records): # ureolysis (1 records): d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales_A_504721; f__Methyloligellaceae; g__; s__Filomicrobium fusiforme # reductive_acetogenesis (0 records): # chemoheterotrophy (30 records): d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanococcoides d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanosarcinaceae; g__Methanolobus d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Actibacter; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robiginitalea; s__ d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae_409200 d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae_409200 d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae_409200; g__Brevefilum d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae_409200; g__Brevefilum; s__Brevefilum sp001508595 d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae_409200; g__Flexilinea; s__ d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae_409200; g__UBA4782; s__UBA4782 sp002403095 d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae_409200; g__UBA4782; s__UBA4782 sp002403095 d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae_409200; g__UBA4782; s__UBA4782 sp002403095 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfobacter d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfotignum; s__Desulfotignum sp011390335 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfovibrionia; o__Desulfovibrionales; f__Desulfovibrionaceae; g__Desulfocurvus; s__ d__Bacteria; p__Firmicutes_A; c__Clostridia_258483; o__Peptostreptococcales; f__Peptostreptococcaceae_256921; g__Peptoclostridium_A; s__Peptoclostridium_A litorale d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales_A_502138; f__Devosiaceae; g__Maritalea; s__ d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales_A_504721; f__Methyloligellaceae; g__; s__Filomicrobium fusiforme