# Report for collapsed table: /data/shared_data/ZYJ_Amplicon/mangrove/taxonomy/SRR19630948/SRR19630948.faprotax # Collapsed table generated on: 2025.01.09 22:34:06 # Original table: /data/shared_data/ZYJ_Amplicon/mangrove/taxonomy/SRR19630948/SRR19630948.otuna.CAPs.fa.taxonomy.tsv # Details: # Original classical table contained 1349 rows and 3 columns # After filtering rows & columns, obtained a table containing 1349 rows & 2 columns # After (potentially) filtering out records based on name, obtained a table comprising 1349 records & 2 data entries per record # Used command: # /data/software/FAPROTAX/FAPROTAX_1.2.10/collapse_table.py -i /data/shared_data/ZYJ_Amplicon/mangrove/taxonomy/SRR19630948/SRR19630948.otuna.CAPs.fa.taxonomy.tsv -o /data/shared_data/ZYJ_Amplicon/mangrove/taxonomy/SRR19630948/SRR19630948.faprotax -g /data/software/FAPROTAX/FAPROTAX_1.2.10/FAPROTAX.txt -r /data/shared_data/ZYJ_Amplicon/mangrove/taxonomy/SRR19630948/SRR19630948.report.txt -v -d Taxon # # Summary of group assignments: # methanotrophy: 4 records # acetoclastic_methanogenesis: 0 records # methanogenesis_by_disproportionation_of_methyl_groups: 0 records # methanogenesis_using_formate: 0 records # methanogenesis_by_CO2_reduction_with_H2: 1 records # methanogenesis_by_reduction_of_methyl_compounds_with_H2: 2 records # hydrogenotrophic_methanogenesis: 3 records # methanogenesis: 4 records # methanol_oxidation: 0 records # methylotrophy: 6 records # aerobic_ammonia_oxidation: 5 records # aerobic_nitrite_oxidation: 0 records # nitrification: 5 records # sulfate_respiration: 27 records # sulfur_respiration: 0 records # dark_sulfite_oxidation: 1 records # sulfite_respiration: 3 records # thiosulfate_respiration: 1 records # respiration_of_sulfur_compounds: 27 records # arsenate_detoxification: 0 records # arsenate_respiration: 0 records # dissimilatory_arsenate_reduction: 0 records # arsenite_oxidation_detoxification: 0 records # arsenite_oxidation_energy_yielding: 0 records # dissimilatory_arsenite_oxidation: 0 records # anammox: 0 records # nitrate_denitrification: 0 records # nitrite_denitrification: 0 records # nitrous_oxide_denitrification: 0 records # denitrification: 0 records # chitinolysis: 0 records # knallgas_bacteria: 0 records # dark_hydrogen_oxidation: 6 records # nitrogen_fixation: 0 records # nitrate_ammonification: 0 records # nitrite_ammonification: 0 records # nitrite_respiration: 0 records # cellulolysis: 0 records # xylanolysis: 0 records # dark_sulfide_oxidation: 0 records # dark_sulfur_oxidation: 1 records # dark_thiosulfate_oxidation: 0 records # dark_oxidation_of_sulfur_compounds: 1 records # manganese_oxidation: 1 records # manganese_respiration: 0 records # ligninolysis: 0 records # fermentation: 4 records # aerobic_chemoheterotrophy: 29 records # invertebrate_parasites: 0 records # human_pathogens_septicemia: 0 records # human_pathogens_pneumonia: 0 records # human_pathogens_nosocomia: 0 records # human_pathogens_meningitis: 0 records # human_pathogens_gastroenteritis: 0 records # human_pathogens_diarrhea: 0 records # human_pathogens_all: 0 records # fish_parasites: 0 records # human_gut: 0 records # human_associated: 0 records # mammal_gut: 0 records # animal_parasites_or_symbionts: 0 records # plant_pathogen: 0 records # oil_bioremediation: 0 records # aromatic_hydrocarbon_degradation: 0 records # aromatic_compound_degradation: 0 records # aliphatic_non_methane_hydrocarbon_degradation: 0 records # hydrocarbon_degradation: 4 records # dark_iron_oxidation: 0 records # iron_respiration: 0 records # nitrate_respiration: 2 records # nitrate_reduction: 3 records # nitrogen_respiration: 2 records # fumarate_respiration: 1 records # intracellular_parasites: 0 records # chlorate_reducers: 0 records # predatory_or_exoparasitic: 1 records # chloroplasts: 0 records # nonphotosynthetic_cyanobacteria: 0 records # photosynthetic_cyanobacteria: 1 records # anoxygenic_photoautotrophy_H2_oxidizing: 0 records # anoxygenic_photoautotrophy_S_oxidizing: 0 records # anoxygenic_photoautotrophy_Fe_oxidizing: 0 records # anoxygenic_photoautotrophy: 0 records # oxygenic_photoautotrophy: 1 records # photoautotrophy: 1 records # aerobic_anoxygenic_phototrophy: 0 records # photoheterotrophy: 0 records # phototrophy: 1 records # plastic_degradation: 0 records # ureolysis: 1 records # reductive_acetogenesis: 0 records # chemoheterotrophy: 77 records # # Loaded 92 groups comprising 8355 members (5060 unique members) # Established 226 assignments of records to groups # 89 out of 1349 records (6.59748 %) were assigned to at least one group # 1260 out of 1349 records (93.4025 %) could not be assigned to any group (leftovers) # 31 groups were represented (i.e. associated with at least one record) # Detailed group assignments are listed below # methanotrophy (4 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae; g__; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae; g__Methylomonas # acetoclastic_methanogenesis (0 records): # methanogenesis_by_disproportionation_of_methyl_groups (0 records): # methanogenesis_using_formate (0 records): # methanogenesis_by_CO2_reduction_with_H2 (1 records): d__Archaea; p__Halobacteriota; c__Methanomicrobia; o__Methanomicrobiales # methanogenesis_by_reduction_of_methyl_compounds_with_H2 (2 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # hydrogenotrophic_methanogenesis (3 records): d__Archaea; p__Halobacteriota; c__Methanomicrobia; o__Methanomicrobiales d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # methanogenesis (4 records): d__Archaea; p__Halobacteriota; c__Methanomicrobia; o__Methanomicrobiales d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales_A_2632; f__Methanocomedenaceae; g__Methanomarinus; s__ d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales # methanol_oxidation (0 records): # methylotrophy (6 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae; g__; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae; g__Methylomonas # aerobic_ammonia_oxidation (5 records): d__Archaea; p__Thermoproteota; c__Nitrososphaeria_A; o__Nitrososphaerales; f__Nitrosopumilaceae; g__Nitrosopumilus_5141 d__Archaea; p__Thermoproteota; c__Nitrososphaeria_A; o__Nitrososphaerales; f__Nitrosopumilaceae; g__Nitrosopumilus_5141 d__Archaea; p__Thermoproteota; c__Nitrososphaeria_A; o__Nitrososphaerales; f__Nitrososphaeraceae; g__Nitrosocosmicus; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_597441; f__Nitrosomonadaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_597441; f__Nitrosomonadaceae; g__Nitrosomonas # aerobic_nitrite_oxidation (0 records): # nitrification (5 records): d__Archaea; p__Thermoproteota; c__Nitrososphaeria_A; o__Nitrososphaerales; f__Nitrosopumilaceae; g__Nitrosopumilus_5141 d__Archaea; p__Thermoproteota; c__Nitrososphaeria_A; o__Nitrososphaerales; f__Nitrosopumilaceae; g__Nitrosopumilus_5141 d__Archaea; p__Thermoproteota; c__Nitrososphaeria_A; o__Nitrososphaerales; f__Nitrososphaeraceae; g__Nitrosocosmicus; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_597441; f__Nitrosomonadaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales_597441; f__Nitrosomonadaceae; g__Nitrosomonas # sulfate_respiration (27 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__; g__; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfobacter d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfospira; s__Desulfospira joergensenii d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfatitalea; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfatitalea; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosudaceae; g__Desulfosudis; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16; s__S5133MH16 sp004193595 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA2156; g__UBA2156; s__UBA2156 sp002328165 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA2174_A_458268; g__UBA2174; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfobulbaceae; g__Desulfobulbus_A_451156; s__Desulfobulbus_A_451156 rhabdoformis d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulfopila_A_450135; s__Desulfopila_A_450135 aestuarii d__Bacteria; p__Desulfobacterota_I; c__Syntrophobacteria; o__Syntrophobacterales; f__Syntrophobacteraceae # sulfur_respiration (0 records): # dark_sulfite_oxidation (1 records): d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Sulfitobacter_E_490551 # sulfite_respiration (3 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfobacter d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfospira; s__Desulfospira joergensenii d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfobulbaceae; g__Desulfobulbus_A_451156; s__Desulfobulbus_A_451156 rhabdoformis # thiosulfate_respiration (1 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfobacter # respiration_of_sulfur_compounds (27 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__; g__; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfobacter d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfospira; s__Desulfospira joergensenii d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfatitalea; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfatitalea; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosudaceae; g__Desulfosudis; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16; s__S5133MH16 sp004193595 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA2156; g__UBA2156; s__UBA2156 sp002328165 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA2174_A_458268; g__UBA2174; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfobulbaceae; g__Desulfobulbus_A_451156; s__Desulfobulbus_A_451156 rhabdoformis d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulfopila_A_450135; s__Desulfopila_A_450135 aestuarii d__Bacteria; p__Desulfobacterota_I; c__Syntrophobacteria; o__Syntrophobacterales; f__Syntrophobacteraceae # arsenate_detoxification (0 records): # arsenate_respiration (0 records): # dissimilatory_arsenate_reduction (0 records): # arsenite_oxidation_detoxification (0 records): # arsenite_oxidation_energy_yielding (0 records): # dissimilatory_arsenite_oxidation (0 records): # anammox (0 records): # nitrate_denitrification (0 records): # nitrite_denitrification (0 records): # nitrous_oxide_denitrification (0 records): # denitrification (0 records): # chitinolysis (0 records): # knallgas_bacteria (0 records): # dark_hydrogen_oxidation (6 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfatitalea; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfatitalea; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfocapsaceae; g__Desulfopila_A_450135; s__Desulfopila_A_450135 aestuarii # nitrogen_fixation (0 records): # nitrate_ammonification (0 records): # nitrite_ammonification (0 records): # nitrite_respiration (0 records): # cellulolysis (0 records): # xylanolysis (0 records): # dark_sulfide_oxidation (0 records): # dark_sulfur_oxidation (1 records): d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Sulfitobacter_E_490551 # dark_thiosulfate_oxidation (0 records): # dark_oxidation_of_sulfur_compounds (1 records): d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Sulfitobacter_E_490551 # manganese_oxidation (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Shewanellaceae_666538; g__Shewanella; s__Shewanella loihica # manganese_respiration (0 records): # ligninolysis (0 records): # fermentation (4 records): d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfobulbaceae; g__Desulfobulbus_A_451156; s__Desulfobulbus_A_451156 rhabdoformis d__Bacteria; p__Verrucomicrobiota; c__Verrucomicrobiae; o__Opitutales; f__Opitutaceae; g__Alterococcus; s__ d__Bacteria; p__Verrucomicrobiota; c__Verrucomicrobiae; o__Opitutales; f__Opitutaceae; g__Alterococcus; s__Alterococcus agarolyticus # aerobic_chemoheterotrophy (29 records): d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Chitinophagales; f__Saprospiraceae; g__Portibacter; s__Portibacter lacus d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_902343; g__JAAUQL01; s__JAAUQL01 sp012033595 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_902343; g__JAAUQL01; s__JAAUQL01 sp012033595 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_902343; g__JAAUQL01; s__JAAUQL01 sp012033595 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robiginitalea d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robiginitalea d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robiginitalea; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Sediminibacter; s__Sediminibacter furfurosus d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Caldilineales; f__Caldilineaceae; g__Litorilinea; s__Litorilinea aerophila d__Bacteria; p__Myxococcota_A_473307; c__Polyangia_463783; o__Polyangiales; f__Polyangiaceae; g__Chondromyces d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales_A_501582; f__Stappiaceae; g__Roseibium_497070 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales_A_504721; f__Hyphomicrobiaceae; g__Hyphomicrobium_A d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Roseovarius_489616; s__Roseovarius aestuarii d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Sulfitobacter_E_490551 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__; g__; s__ d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Alteraurantiacibacter; s__Alteraurantiacibacter gangjinensis d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Croceicoccus_484963 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Rhizorhabdus_483366 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomicrobium_484090 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Shewanellaceae_666538; g__Shewanella d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Shewanellaceae_666538; g__Shewanella; s__Shewanella loihica d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae; g__Vibrio_678715 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_650611; f__Pseudomonadaceae; g__Pseudomonas_F d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales_616009; f__Xanthomonadaceae_616009; g__Arenimonas_613591 # invertebrate_parasites (0 records): # human_pathogens_septicemia (0 records): # human_pathogens_pneumonia (0 records): # human_pathogens_nosocomia (0 records): # human_pathogens_meningitis (0 records): # human_pathogens_gastroenteritis (0 records): # human_pathogens_diarrhea (0 records): # human_pathogens_all (0 records): # fish_parasites (0 records): # human_gut (0 records): # human_associated (0 records): # mammal_gut (0 records): # animal_parasites_or_symbionts (0 records): # plant_pathogen (0 records): # oil_bioremediation (0 records): # aromatic_hydrocarbon_degradation (0 records): # aromatic_compound_degradation (0 records): # aliphatic_non_methane_hydrocarbon_degradation (0 records): # hydrocarbon_degradation (4 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae; g__; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae; g__Methylomonas # dark_iron_oxidation (0 records): # iron_respiration (0 records): # nitrate_respiration (2 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Shewanellaceae_666538; g__Shewanella d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Shewanellaceae_666538; g__Shewanella; s__Shewanella loihica # nitrate_reduction (3 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Shewanellaceae_666538; g__Shewanella d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Shewanellaceae_666538; g__Shewanella; s__Shewanella loihica d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae; g__Vibrio_678715 # nitrogen_respiration (2 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Shewanellaceae_666538; g__Shewanella d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Shewanellaceae_666538; g__Shewanella; s__Shewanella loihica # fumarate_respiration (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Shewanellaceae_666538; g__Shewanella; s__Shewanella loihica # intracellular_parasites (0 records): # chlorate_reducers (0 records): # predatory_or_exoparasitic (1 records): d__Bacteria; p__Myxococcota_A_473307; c__Polyangia_463783; o__Haliangiales_463188; f__Haliangiaceae_463188; g__Haliangium_463188; s__Haliangium ochraceum # chloroplasts (0 records): # nonphotosynthetic_cyanobacteria (0 records): # photosynthetic_cyanobacteria (1 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 # anoxygenic_photoautotrophy_H2_oxidizing (0 records): # anoxygenic_photoautotrophy_S_oxidizing (0 records): # anoxygenic_photoautotrophy_Fe_oxidizing (0 records): # anoxygenic_photoautotrophy (0 records): # oxygenic_photoautotrophy (1 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 # photoautotrophy (1 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 # aerobic_anoxygenic_phototrophy (0 records): # photoheterotrophy (0 records): # phototrophy (1 records): d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Coleofasciculaceae_23353; g__SIO2C1; s__SIO2C1 sp010672925 # plastic_degradation (0 records): # ureolysis (1 records): d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Shewanellaceae_666538; g__Shewanella; s__Shewanella loihica # reductive_acetogenesis (0 records): # chemoheterotrophy (77 records): d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales d__Archaea; p__Thermoplasmatota; c__Thermoplasmata_1773; o__Methanomassiliicoccales d__Bacteria; p__Acidobacteriota; c__Vicinamibacteria; o__Vicinamibacterales; f__SCN-69-37; g__SCN-69-37; s__SCN-69-37 sp001724025 d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Chitinophagales; f__Saprospiraceae; g__Portibacter; s__Portibacter lacus d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_902343; g__JAAUQL01; s__JAAUQL01 sp012033595 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_902343; g__JAAUQL01; s__JAAUQL01 sp012033595 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae_902343; g__JAAUQL01; s__JAAUQL01 sp012033595 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__BACL21; s__BACL21 sp009921505 d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robertkochia; s__Robertkochia marina d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robiginitalea d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robiginitalea d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Robiginitalea; s__ d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales_877923; f__Flavobacteriaceae; g__Sediminibacter; s__Sediminibacter furfurosus d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae_409200 d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae_409200; g__UBA4782; s__UBA4782 sp002403095 d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Anaerolineales; f__Anaerolineaceae_409200; g__UBA4782; s__UBA4782 sp002403095 d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Caldilineales; f__Caldilineaceae; g__Bin5; s__ d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Caldilineales; f__Caldilineaceae; g__Bin5; s__ d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Caldilineales; f__Caldilineaceae; g__Bin5; s__ d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Caldilineales; f__Caldilineaceae; g__Bin5; s__ d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Caldilineales; f__Caldilineaceae; g__Litorilinea; s__Litorilinea aerophila d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__; g__; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfobacter d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfobacteraceae_459419; g__Desulfospira; s__Desulfospira joergensenii d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfatitalea; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfatitalea; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosarcinaceae; g__Desulfosarcina d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__Desulfosudaceae; g__Desulfosudis; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__SG8-13; g__SG8-13; s__SG8-13 sp001303025 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA11574; g__S5133MH16; s__S5133MH16 sp004193595 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA2156; g__UBA2156; s__UBA2156 sp002328165 d__Bacteria; p__Desulfobacterota_I; c__Desulfobacteria; o__Desulfobacterales; f__UBA2174_A_458268; g__UBA2174; s__ d__Bacteria; p__Desulfobacterota_I; c__Desulfobulbia; o__Desulfobulbales; f__Desulfobulbaceae; g__Desulfobulbus_A_451156; s__Desulfobulbus_A_451156 rhabdoformis d__Bacteria; p__Myxococcota_A_473307; c__Polyangia_463783; o__Polyangiales; f__Polyangiaceae; g__Chondromyces d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales_A_501582; f__Stappiaceae; g__Roseibium_497070 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales_A_504721; f__Hyphomicrobiaceae; g__Hyphomicrobium_A d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Roseovarius_489616; s__Roseovarius aestuarii d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Sulfitobacter_E_490551 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__; g__; s__ d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Alteraurantiacibacter; s__Alteraurantiacibacter gangjinensis d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Croceicoccus_484963 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Rhizorhabdus_483366 d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomicrobium_484090 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Shewanellaceae_666538; g__Shewanella d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Shewanellaceae_666538; g__Shewanella; s__Shewanella loihica d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales_A_737866; f__Vibrionaceae; g__Vibrio_678715 d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae; g__; s__ d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae; g__Methylomonas d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales_650611; f__Pseudomonadaceae; g__Pseudomonas_F d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales_616009; f__Xanthomonadaceae_616009; g__Arenimonas_613591 d__Bacteria; p__Verrucomicrobiota; c__Verrucomicrobiae; o__Opitutales; f__Opitutaceae; g__Alterococcus; s__ d__Bacteria; p__Verrucomicrobiota; c__Verrucomicrobiae; o__Opitutales; f__Opitutaceae; g__Alterococcus; s__Alterococcus agarolyticus