3 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 10 Bacteria Proteobacteria Alphaproteobacteria Desulfobacterales Desulfobulbaceae 3 Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Archaeoglobus 20 Bacteria Firmicutes Actinobacteria Actinomycetales Aquificaceae Propionibacterium 7 Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae 27 Bacteria Euryarchaeota Thermoplasmata E2 Lactobacillaceae Lactobacillus 58014 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Prevotella 7 Bacteria Firmicutes Clostridia Clostridiales Lactobacillus 6 Bacteria Proteobacteria Alphaproteobacteria Clostridiales mitochondria 12 Bacteria Proteobacteria Thermoplasmata E2 6 Bacteria Proteobacteria Gammaproteobacteria Bacteroidales Enterobacteriaceae 28155 Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae 152 Bacteria Actinobacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium 27 Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae 14 Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae 283 Bacteria Euryarchaeota Thermoplasmata E2 30 Bacteria Firmicutes Clostridia Clostridiales Megasphaera 915 Bacteria Firmicutes Bacilli Clostridiales Ruminococcaceae Faecalibacterium Faecalibacterium_prausnitzii 26 Bacteria Firmicutes Bacilli Clostridiales 8 Bacteria Proteobacteria Thermoplasmata E2 Fusobacteriaceae 11 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 60 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 42 Bacteria Euryarchaeota Thermoplasmata E2 vadinCA11 10 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Bacillus Bacillus_flexus 9 Bacteria Firmicutes Actinobacteria Actinomycetales 35 Bacteria Euryarchaeota Thermoplasmata E2 16 Bacteria Euryarchaeota Thermoplasmata E2 Asteroleplasma 9 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus 9 Bacteria Firmicutes Clostridia Clostridiales 14 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Candidatus_Nitrososphaera Candidatus_Nitrososphaera_SCA1145 32 Bacteria Firmicutes Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium 8 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Faecalibacterium Faecalibacterium_prausnitzii 88 Bacteria Actinobacteria Actinobacteria Actinomycetales Ruminococcaceae 5 Bacteria Proteobacteria Alphaproteobacteria Clostridiales mitochondria 11 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Candidatus_Nitrososphaera Candidatus_Nitrososphaera_SCA1145 5 Bacteria Firmicutes Thermoplasmata E2 Nitrososphaeraceae Candidatus_Nitrososphaera 704 Bacteria Proteobacteria Clostridia Clostridiales Corynebacteriaceae Corynebacterium 52 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 42 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Faecalibacterium Faecalibacterium_prausnitzii 63 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 28 Bacteria Firmicutes Clostridia Clostridiales Devosia 11 Bacteria Crenarchaeota Thermoplasmata E2 Cenarchaeaceae Nitrosopumilus 11 Bacteria Firmicutes Thermoplasmata E2 13 Bacteria Euryarchaeota Thermoplasmata E2 18 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 6 Bacteria Firmicutes Clostridia Clostridiales Methylophilaceae 13 Bacteria Crenarchaeota Clostridia Clostridiales Saprospiraceae Candidatus_Nitrososphaera 51 Bacteria Proteobacteria Clostridia Clostridiales 14 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 22 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 4 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Faecalibacterium Faecalibacterium_prausnitzii 124 Bacteria Firmicutes Clostridia Clostridiales 3 Bacteria Proteobacteria Clostridia Clostridiales TMEG 5 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 191 Bacteria Proteobacteria Thermoplasmata Clostridiales 50 Bacteria Proteobacteria Alphaproteobacteria E2 18 Bacteria Proteobacteria Clostridia Clostridiales Corynebacteriaceae Corynebacterium 3 Bacteria Proteobacteria Clostridia Clostridiales Pelagibacteraceae 70 Bacteria Euryarchaeota DSEG ArcA07 19 Bacteria Proteobacteria Clostridia Clostridiales 721 Bacteria Euryarchaeota Alphaproteobacteria E2 Ruminococcaceae 136 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 27 Bacteria Euryarchaeota Thermoplasmata E2 vadinCA11 30 Bacteria Cyanobacteria Oscillatoriophycideae Clostridiales Xenococcaceae 85 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 15 Bacteria Proteobacteria Clostridia Clostridiales Fusobacteriaceae 55 Bacteria Euryarchaeota Thermoplasmata E2 Ruminococcaceae Candidatus_Nitrososphaera Candidatus_Nitrososphaera_SCA1145 29 Bacteria Proteobacteria Clostridia Clostridiales Veillonellaceae 30 Bacteria Proteobacteria Thermoplasmata E2 DHVEG 22 Bacteria Proteobacteria Thermoplasmata E2 Ruminococcaceae 1996 Bacteria Euryarchaeota Clostridia Clostridiales Xenococcaceae 7 Bacteria Euryarchaeota Thermoplasmata E2 vadinCA11 7 Bacteria Firmicutes Alphaproteobacteria Clostridiales Bacillaceae Bacillus Faecalibacterium_prausnitzii 28 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 259 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 98 Bacteria Firmicutes Thermoplasmata E2 Ruminococcaceae Faecalibacterium Faecalibacterium_prausnitzii 7 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 46 Bacteria Euryarchaeota Thermoplasmata E2 29 Bacteria Proteobacteria Thermoplasmata E2 Marine_group_II 24 Bacteria Proteobacteria Thermoplasmata E2 3 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 7 Bacteria Euryarchaeota Thermoplasmata E2 11 Bacteria Proteobacteria Thermoplasmata E2 Ruminococcaceae 13 Bacteria Firmicutes Thermoplasmata E2 11 Bacteria Proteobacteria Clostridia Clostridiales Flavobacteriaceae 8 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Candidatus_Nitrososphaera Candidatus_Nitrososphaera_SCA1145 48 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 15 Bacteria Firmicutes Thermoplasmata E2 Aerococcaceae Alloiococcus 10 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 85 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 7 Bacteria Firmicutes Clostridia Clostridiales Xenococcaceae 527 Bacteria Firmicutes Thermoplasmata E2 38 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 20 Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae 23 Bacteria Firmicutes Clostridia Clostridiales 23 Bacteria Euryarchaeota Thermoplasmata E2 12 Bacteria Proteobacteria Thermoplasmata E2 Marine_group_III 12 Bacteria Proteobacteria Thermoplasmata E2 4 Bacteria Proteobacteria Thermoplasmata E2 Marine_group_II 4 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 4 Bacteria Euryarchaeota Thermoplasmata E2 vadinCA11 28 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 9 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Candidatus_Nitrososphaera 4 Bacteria Firmicutes Clostridia Clostridiales DHVEG 6 Bacteria Euryarchaeota Thermoplasmata E2 Ruminococcaceae 3 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 4 Bacteria Firmicutes Clostridia Clostridiales Helcococcus 10 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 9 Bacteria Euryarchaeota Clostridia Clostridiales 10 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 17 Bacteria Proteobacteria Alphaproteobacteria Clostridiales Ruminococcaceae 66 Bacteria Firmicutes Clostridia Clostridiales vadinCA11 32 Bacteria Cyanobacteria Clostridia Clostridiales mitochondria 3 Bacteria Firmicutes Clostridia Clostridiales Mycoplasmataceae Mycoplasma 451 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 7 Bacteria Euryarchaeota Thermoplasmata E2 57 Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae 75 Bacteria Firmicutes Clostridia Clostridiales Picrophilaceae 32 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 4 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 7 Bacteria Euryarchaeota Gammaproteobacteria Clostridiales 6 Bacteria Proteobacteria Thermoplasmata E2 16 Bacteria Proteobacteria Actinobacteria Actinomycetales Ruminococcaceae 3 Bacteria Euryarchaeota Clostridia Clostridiales 9 Bacteria Euryarchaeota Clostridia Clostridiales DHVEG 15 Bacteria Proteobacteria Alphaproteobacteria E2 8 Bacteria Proteobacteria Thermoplasmata E2 DHVEG 1705 Bacteria Euryarchaeota Thermoplasmata E2 15 Bacteria Euryarchaeota Alphaproteobacteria E2 DHVEG 90 Bacteria Proteobacteria Alphaproteobacteria Clostridiales Flavobacteriaceae 41 Bacteria Proteobacteria Thermoplasmata E2 Nitrososphaeraceae Candidatus_Nitrososphaera 109 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Akkermansia Akkermansia_muciniphila 44 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 3 Bacteria Proteobacteria Alphaproteobacteria E2 Sphingomonadaceae 5 Bacteria Firmicutes Clostridia Clostridiales 5 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 12 Bacteria Cyanobacteria Clostridia Clostridiales Ruminococcaceae 165 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Faecalibacterium Faecalibacterium_prausnitzii 69 Bacteria Firmicutes Clostridia Clostridiales Pseudomonadaceae Pseudomonas 4 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Faecalibacterium Faecalibacterium_prausnitzii