16 Bacteria Firmicutes Bacilli Clostridiales Spirochaetaceae 5 Bacteria Proteobacteria Gammaproteobacteria Burkholderiales Enterobacteriaceae 6 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 9 Bacteria Proteobacteria Bacteroidia Bacteroidales Verrucomicrobiaceae 9 Bacteria Proteobacteria Clostridia Clostridiales 6 Bacteria Firmicutes Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium 23 Bacteria Proteobacteria Alphaproteobacteria Clostridiales Actinomycetaceae Actinomyces 43 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella 3 Bacteria Proteobacteria Bacilli Clostridiales Rhodobacteraceae Prevotella 23 Bacteria Proteobacteria Bacteroidia Bacteroidales Halobacteriaceae 17 Bacteria Proteobacteria Deltaproteobacteria Clostridiales Desulfobacteraceae 16 Bacteria Firmicutes Clostridia Clostridiales Cenarchaeaceae 8 Bacteria Proteobacteria Actinobacteria Actinomycetales Mycoplasmataceae Mycoplasma 12 Bacteria Firmicutes Clostridia Clostridiales 6 Bacteria Firmicutes Clostridia Clostridiales Peptoniphilus 5 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 113 Bacteria Proteobacteria Bacilli Clostridiales Chitinophagaceae 4 Bacteria Firmicutes Clostridia Clostridiales 56 Bacteria Actinobacteria Actinobacteria Actinomycetales Microbacteriaceae Lactobacillus 33 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 15 Bacteria Proteobacteria Alphaproteobacteria Clostridiales DHVEG 5 Bacteria Proteobacteria Clostridia Clostridiales mitochondria 7 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 20 Bacteria Proteobacteria Gammaproteobacteria Actinomycetales WSA2 51 Bacteria Proteobacteria Alphaproteobacteria Desulfobacterales Desulfobacteraceae 6 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 7 Bacteria Euryarchaeota Thermoplasmata E2 11 Bacteria Proteobacteria Alphaproteobacteria E2 Pelagibacteraceae 10 Bacteria Firmicutes Clostridia Clostridiales Bacillaceae 5 Bacteria Proteobacteria Clostridia Clostridiales Marine_group_II 3 Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae 4 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 4 Bacteria Firmicutes Clostridia Clostridiales Halobacteriaceae 10 Bacteria Proteobacteria Actinobacteria Actinomycetales 15 Bacteria Firmicutes Clostridia Clostridiales 12 Bacteria Firmicutes Clostridia Clostridiales 5 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 90 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 5 Bacteria Proteobacteria Thermoplasmata E2 Sulfobacillus 12 Bacteria Firmicutes Thermoplasmata E2 Marine_group_II 152 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 7 Bacteria Firmicutes Bacilli Clostridiales Bacillaceae 10 Bacteria Proteobacteria Deltaproteobacteria E2 70 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 10 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella_copri 29 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 6 Bacteria Proteobacteria Thermoplasmata E2 DHVEG 4 Bacteria Firmicutes Alphaproteobacteria Clostridiales Ruminococcaceae 18 Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae 5 Bacteria Proteobacteria Actinobacteria Actinomycetales Halobacteriaceae 24 Bacteria Firmicutes Clostridia Clostridiales DHVEG 20 Bacteria Actinobacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium 21 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella 8 Bacteria Proteobacteria Alphaproteobacteria E2 DHVEG 10 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Lactobacillus 221 Bacteria Firmicutes Thermoplasmata E2 Ruminococcaceae 8 Bacteria Proteobacteria Clostridia Clostridiales 36 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 221 Bacteria Proteobacteria Thermoplasmata E2 DHVEG 11 Bacteria Proteobacteria Gammaproteobacteria Clostridiales Xanthomonadaceae 6 Bacteria Firmicutes Actinobacteria Actinomycetales Marine_group_III 15 Bacteria Proteobacteria Thermoplasmata E2 Helcococcus 123 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 5 Bacteria Bacteroidetes Bacteroidia Bacteroidales 116 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 14 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 10 Bacteria Actinobacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium 42 Bacteria Euryarchaeota Actinobacteria Actinomycetales Ruminococcaceae 10 Bacteria Proteobacteria Actinobacteria Actinomycetales mitochondria 7 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 4 Bacteria Firmicutes Thermoplasmata E2 Cenarchaeaceae Nitrosopumilus 8 Bacteria Proteobacteria Clostridia Clostridiales 95 Bacteria Proteobacteria Gammaproteobacteria Bacteroidales Enterobacteriaceae 22 Bacteria Proteobacteria Deltaproteobacteria Actinomycetales Desulfovibrionaceae Desulfovibrio 5 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae Faecalibacterium Faecalibacterium_prausnitzii 42 Bacteria Proteobacteria Clostridia Clostridiales 68 Bacteria Proteobacteria Gammaproteobacteria Actinomycetales Bacillaceae 45 Bacteria Actinobacteria Actinobacteria Actinomycetales Streptomycetaceae Streptomyces 11 Bacteria Proteobacteria Bacilli Actinomycetales Mycoplasmataceae Cetobacterium Cetobacterium_somerae 9 Bacteria Proteobacteria Alphaproteobacteria Clostridiales mitochondria 27 Bacteria Euryarchaeota Thermoplasmata E2 Flavobacteriaceae 37 Bacteria Euryarchaeota Actinobacteria Actinomycetales Marine_group_II 36 Bacteria Proteobacteria Actinobacteria Actinomycetales Desulfobacteraceae 49 Bacteria Firmicutes Clostridia Clostridiales 18 Bacteria Proteobacteria Clostridia Clostridiales Lachnospiraceae 68 Bacteria Proteobacteria Clostridia Clostridiales 7 Bacteria Proteobacteria Alphaproteobacteria Clostridiales mitochondria 4 Bacteria Proteobacteria Actinobacteria Actinomycetales 3 Bacteria Bacteroidetes Clostridia Bacteroidales Erysipelotrichaceae Allobaculum 13 Bacteria Euryarchaeota Thermoplasmata E2 4 Bacteria Firmicutes Clostridia Clostridiales 15 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Faecalibacterium Faecalibacterium_prausnitzii 13 Bacteria Proteobacteria Actinobacteria Actinomycetales 5 Bacteria Actinobacteria Actinobacteria Actinomycetales Streptosporangiaceae 13 Bacteria Proteobacteria Clostridia Clostridiales 4 Bacteria Firmicutes Clostridia Clostridiales DHVEG 152 Bacteria Acidobacteria Bacteroidia Bacteroidales 49 Bacteria Firmicutes Clostridia Clostridiales S24 93 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 48 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae Actinomyces 48 Bacteria Firmicutes Clostridia Clostridiales DHVEG 12 Bacteria Proteobacteria Actinobacteria Actinomycetales Actinomycetaceae 17 Bacteria Bacteroidetes Actinobacteria Actinomycetales Actinomycetaceae 19 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 72 Bacteria Firmicutes Clostridia Clostridiales DHVEG 21 Bacteria Euryarchaeota Thermoplasmata E2 40 Bacteria Firmicutes Clostridia Clostridiales 22 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 26 Bacteria Proteobacteria Chloroplast Clostridiales 6 Bacteria Proteobacteria Thermoplasmata E2 21 Bacteria Firmicutes Bacilli Bacillales 17 Bacteria Cyanobacteria Chloroplast E2 3 Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae 11 Bacteria Firmicutes Clostridia Clostridiales 9 Bacteria Firmicutes Clostridia Clostridiales Lactobacillaceae Lactobacillus 81 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 5 Bacteria Proteobacteria Halobacteria Halobacteriales Halobacteriaceae Halorubrum 16 Bacteria Firmicutes Clostridia Clostridiales 39 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 13 Bacteria Firmicutes Thermoplasmata E2 5 Bacteria Firmicutes Clostridia Clostridiales 11 Bacteria Proteobacteria Thermoplasmata E2 3 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 53 Bacteria Firmicutes Clostridia Clostridiales 62 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 5 Bacteria Proteobacteria Clostridia Clostridiales mitochondria 12 Bacteria Firmicutes Chloroplast Clostridiales 5 Bacteria Bacteroidetes Bacteroidia Bacteroidales Spirochaetaceae Prevotella 63 Bacteria Proteobacteria Alphaproteobacteria E2 mitochondria 6 Bacteria Proteobacteria DSEG ArcA07 20 Bacteria Cyanobacteria Clostridia Clostridiales Picrophilaceae 131 Bacteria Proteobacteria Deltaproteobacteria Clostridiales 4 Bacteria Proteobacteria Alphaproteobacteria E2 vadinCA11 8 Bacteria Proteobacteria Alphaproteobacteria Clostridiales Spirochaetaceae Treponema 727 Bacteria Proteobacteria Clostridia Clostridiales Anaerococcus 18 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 6 Bacteria Proteobacteria Deltaproteobacteria E2 DHVEG 55 Bacteria Proteobacteria Clostridia Clostridiales 498 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 10 Bacteria Proteobacteria Chloroplast Clostridiales Ruminococcaceae 222 Bacteria Proteobacteria Alphaproteobacteria 46 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 142 Bacteria Firmicutes Clostridia Clostridiales Corynebacteriaceae Corynebacterium 100 Bacteria Proteobacteria Clostridia Clostridiales Sphingomonadaceae 10 Bacteria Euryarchaeota Clostridia Clostridiales vadinCA11 9 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 8 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 5 Bacteria Proteobacteria Thermoplasmata E2 7 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 5 Bacteria Firmicutes Clostridia Clostridiales 39 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 28 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 5 Bacteria Acidobacteria Gammaproteobacteria iii1 4 Bacteria Proteobacteria Clostridia Clostridiales Marine_group_II 13 Bacteria Firmicutes Clostridia Clostridiales 7 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 7 Bacteria Euryarchaeota Thermoplasmata E2 102 Bacteria Euryarchaeota Thermoplasmata E2 11 Bacteria Proteobacteria Alphaproteobacteria Clostridiales mitochondria 22 Bacteria Proteobacteria Thermoplasmata E2 Acholeplasmataceae Candidatus_Phytoplasma Candidatus_Phytoplasma_witches 1255 Bacteria Euryarchaeota Clostridia Clostridiales DHVEG 697 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 190 Bacteria Proteobacteria Alphaproteobacteria Clostridiales 84 Bacteria Firmicutes Clostridia E2 Ruminococcaceae 119 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 545 Bacteria Firmicutes Bacilli E2 DHVEG 8 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 12 Bacteria Proteobacteria Thermoplasmata E2 Veillonellaceae 5 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 125 Bacteria Firmicutes Clostridia E2 DHVEG 5 Bacteria Firmicutes Thermoplasmata E2 vadinCA11 491 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae vadinCA11 18 Bacteria Euryarchaeota Thermoplasmata E2 21 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 5 Bacteria Firmicutes Clostridia Clostridiales Marine_group_II 4 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Faecalibacterium Faecalibacterium_prausnitzii 10 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 40 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 20 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Lactobacillus 37 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Verrucomicrobiaceae 10805 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 27 Bacteria Firmicutes Clostridia Clostridiales 13 Bacteria Proteobacteria Alphaproteobacteria Clostridiales mitochondria 1340 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 915 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Faecalibacterium Faecalibacterium_prausnitzii 47 Bacteria Proteobacteria Deltaproteobacteria E2 Ruminococcaceae 164 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 29 Bacteria Firmicutes Clostridia Clostridiales Flavobacteriaceae 6 Bacteria Bacteroidetes Bacteroidia Bacteroidales S24 49 Bacteria Proteobacteria Alphaproteobacteria Clostridiales Lactobacillaceae Lactobacillus 28 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 35 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 11198 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 2334 Bacteria Euryarchaeota Thermoplasmata E2 Ruminococcaceae 799 Bacteria Euryarchaeota Clostridia E2 251 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 225 Bacteria Firmicutes Clostridia Clostridiales DHVEG 247 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 323 Bacteria Proteobacteria Thermoplasmata E2 DHVEG 87 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 78 Bacteria Euryarchaeota Thermoplasmata E2 vadinCA11 13 Bacteria Proteobacteria Thermoplasmata E2 Marine_group_III 20 Bacteria Proteobacteria Thermoplasmata E2 222 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 50 Bacteria Proteobacteria Clostridia E2 Methylophilaceae 109 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 41 Bacteria Cyanobacteria Chloroplast Clostridiales 11 Bacteria Firmicutes Clostridia Clostridiales Anaeroplasmataceae Asteroleplasma 100 Bacteria Proteobacteria Clostridia Clostridiales Veillonellaceae 35 Bacteria Firmicutes Thermoplasmata E2 Bacillaceae 7 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 6 Bacteria Euryarchaeota Thermoplasmata E2 25 Bacteria Proteobacteria Gammaproteobacteria Clostridiales Ruminococcaceae 39 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 22 Bacteria Firmicutes Clostridia Clostridiales Marine_group_II 9 Bacteria Firmicutes Actinobacteria Actinomycetales 169 Bacteria Euryarchaeota Thermoplasmata E2 16 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 14 Bacteria Firmicutes Thermoplasmata E2 4 Bacteria Firmicutes Clostridia Clostridiales DHVEG 5 Bacteria Euryarchaeota Clostridia Clostridiales 45 Bacteria Firmicutes Clostridia Clostridiales Nitrososphaeraceae Candidatus_Nitrososphaera Candidatus_Nitrososphaera_SCA1145 10 Bacteria Euryarchaeota Thermoplasmata E2 12 Bacteria Firmicutes Thermoplasmata E2 Ruminococcaceae 3 Bacteria Proteobacteria Deltaproteobacteria Clostridiales 3 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 6 Bacteria Firmicutes Clostridia Clostridiales Lactobacillus 46 Bacteria Proteobacteria Alphaproteobacteria Clostridiales Nitrosomonadaceae 16 Bacteria Firmicutes Clostridia Clostridiales Nitrososphaeraceae Candidatus_Nitrososphaera 69 Bacteria Proteobacteria Alphaproteobacteria Clostridiales Ruminococcaceae 837 Bacteria Euryarchaeota Clostridia Clostridiales Cenarchaeaceae 12 Bacteria Firmicutes Thermoplasmata E2 7968 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 2756 Bacteria Proteobacteria Clostridia Clostridiales 11 Bacteria Firmicutes Thermoplasmata E2 Ruminococcaceae Faecalibacterium Faecalibacterium_prausnitzii 42 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 628 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 41 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 6 Bacteria Proteobacteria Thermoplasmata E2 16 Bacteria Proteobacteria Alphaproteobacteria E2 mitochondria 90 Bacteria Proteobacteria Clostridia Clostridiales 42 Bacteria Euryarchaeota Thermoplasmata E2 67 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 6 Bacteria Euryarchaeota Thermoplasmata E2 Nitrososphaeraceae Candidatus_Nitrososphaera Candidatus_Nitrososphaera_SCA1145 154 Bacteria Firmicutes Thermoplasmata E2 Ruminococcaceae 39 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 30 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 4 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 12 Bacteria Proteobacteria Thermoplasmata E2 NS9 54 Bacteria Firmicutes Clostridia Clostridiales Planctomycetaceae Planctomyces 13 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 82 Bacteria Proteobacteria Alphaproteobacteria Clostridiales Marine_group_II 102 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 18 Bacteria Proteobacteria Thermoplasmata E2 DHVEG 59 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 7 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 3 Bacteria Proteobacteria Thermoplasmata Clostridiales Ruminococcaceae 22 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus 36 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 45 Bacteria Euryarchaeota Thermoplasmata E2 Ruminococcaceae 134 Bacteria Euryarchaeota Clostridia Clostridiales 1794 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 13 Bacteria Firmicutes Clostridia Clostridiales Bacillaceae 7 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 9 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 114 Bacteria Proteobacteria Thermoplasmata E2 Halomonadaceae Candidatus_Portiera 5 Bacteria Proteobacteria Alphaproteobacteria E2 Marine_group_II 15 Bacteria Euryarchaeota Thermoplasmata E2 Nitrososphaeraceae Candidatus_Nitrososphaera Candidatus_Nitrososphaera_SCA1145 6 Bacteria Proteobacteria Gammaproteobacteria E2 Marine_group_II 24 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae Kaistobacter 188 Bacteria Proteobacteria Thermoplasmata E2 34 Bacteria Firmicutes Thermoplasmata E2 Veillonellaceae Bacillus 11 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 5 Bacteria Firmicutes Clostridia Clostridiales 8 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 3 Bacteria Firmicutes Clostridia Clostridiales Bacillaceae Geobacillus Faecalibacterium_prausnitzii 184 Bacteria Firmicutes Clostridia Clostridiales Mamiellaceae 35 Bacteria Firmicutes Clostridia E2 Ruminococcaceae 4 Bacteria Euryarchaeota Thermoplasmata E2 76 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 5 Bacteria Proteobacteria Thermoplasmata E2 9 Bacteria Euryarchaeota Thermoplasmata E2 Nitrososphaeraceae Candidatus_Nitrososphaera Candidatus_Nitrososphaera_SCA1145 14 Bacteria Firmicutes Clostridia Clostridiales Marine_group_II 79 Bacteria Proteobacteria Thermoplasmata E2 DHVEG 22 Bacteria Proteobacteria Thermoplasmata E2 18 Bacteria Proteobacteria Clostridia Clostridiales mitochondria 21 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 8 Bacteria Proteobacteria Thermoplasmata E2 Veillonellaceae 12 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 15 Bacteria Euryarchaeota Thermoplasmata E2 7352 Bacteria Firmicutes Clostridia E2 Ruminococcaceae 325 Bacteria Euryarchaeota Thermoplasmata E2 Ruminococcaceae 30 Bacteria Proteobacteria Alphaproteobacteria E2 Ruminococcaceae 55 Bacteria Euryarchaeota Clostridia Clostridiales 9 Bacteria Firmicutes Clostridia Clostridiales 101 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 16 Bacteria Euryarchaeota Thermoplasmata E2 Nocardiopsaceae 181 Bacteria Proteobacteria Thermoplasmata E2 Marine_group_II 5 Bacteria Proteobacteria Thermoplasmata E2 Erythrobacteraceae 154 Bacteria Proteobacteria Alphaproteobacteria Clostridiales 10 Bacteria Proteobacteria Thermoplasmata E2 DHVEG 177 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 10 Bacteria Proteobacteria Thermoplasmata E2 44 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Faecalibacterium Faecalibacterium_prausnitzii 19 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 70 Bacteria Firmicutes Actinobacteria Actinomycetales Cenarchaeaceae Nitrosopumilus 421 Bacteria Euryarchaeota Clostridia Clostridiales Ruminococcaceae 17 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 47 Bacteria Euryarchaeota Thermoplasmata E2 Lactobacillaceae Lactobacillus 147 Bacteria Euryarchaeota Thermoplasmata Thermoplasmatales Picrophilaceae Thermogymnomonas 3 Bacteria Proteobacteria Clostridia Clostridiales 9 Bacteria Firmicutes Thermoplasmata E2 Ruminococcaceae 19 Bacteria Proteobacteria Alphaproteobacteria Clostridiales Spirochaetaceae Spirochaeta 7 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 16 Bacteria Proteobacteria Gammaproteobacteria Clostridiales Ruminococcaceae 4 Bacteria Euryarchaeota Thermoplasmata E2 4 Bacteria Proteobacteria Alphaproteobacteria E2 17 Bacteria Proteobacteria Clostridia Clostridiales 8 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 4 Bacteria Firmicutes Clostridia E2 Ruminococcaceae 15 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 23 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 3 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae Candidatus_Phytoplasma 3 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 14 Bacteria Firmicutes Bacilli Clostridiales Cenarchaeaceae Nitrosopumilus 4 Bacteria Euryarchaeota Thermoplasmata E2 5 Bacteria Proteobacteria Thermoplasmata E2 Marine_group_II 10 Bacteria Firmicutes Clostridia Clostridiales Anaerococcus 7 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 35 Bacteria Proteobacteria Clostridia Clostridiales Methylophilaceae 5 Bacteria Proteobacteria Alphaproteobacteria E2 22 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 4 Bacteria Proteobacteria Alphaproteobacteria E2 879 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 45 Bacteria Firmicutes Thermoplasmata E2 vadinCA11 39 Bacteria Proteobacteria Clostridia Clostridiales 198 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 23 Bacteria Proteobacteria Clostridia Clostridiales Methylophilaceae 7 Bacteria Proteobacteria Clostridia Clostridiales 110 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 664 Bacteria Proteobacteria Thermoplasmata E2 17 Bacteria Firmicutes Clostridia Clostridiales Nitrososphaeraceae Candidatus_Nitrososphaera Candidatus_Nitrososphaera_SCA1145 41 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 24 Bacteria Proteobacteria Thermoplasmata E2 94 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 3 Bacteria Proteobacteria Alphaproteobacteria Actinomycetales Enterobacteriaceae 38 Bacteria Firmicutes Thermoplasmata E2 6 Bacteria Firmicutes Clostridia Clostridiales 20 Bacteria Euryarchaeota Thermoplasmata E2 vadinCA11 152 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 38 Bacteria Firmicutes Clostridia Clostridiales 26 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 1717 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 4 Bacteria Euryarchaeota Thermoplasmata E2 Ruminococcaceae 9 Bacteria Cyanobacteria Chloroplast E2 Marine_group_II 4 Bacteria Euryarchaeota Thermoplasmata E2 TMEG 13 Bacteria Euryarchaeota Thermoplasmata E2 5 Bacteria Firmicutes Clostridia Clostridiales 209 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 33 Bacteria Firmicutes Clostridia Clostridiales vadinCA11 10 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 25 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 10 Bacteria Euryarchaeota Thermoplasmata E2 30 Bacteria Proteobacteria Thermoplasmata E2 43 Bacteria Firmicutes Clostridia Clostridiales 11 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 33 Bacteria Firmicutes Clostridia Clostridiales 7 Bacteria Euryarchaeota Thermoplasmata E2 1183 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 5 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae Akkermansia Akkermansia_muciniphila 24 Bacteria Proteobacteria Alphaproteobacteria E2 Marine_group_III 4 Bacteria Proteobacteria Clostridia Clostridiales 285 Bacteria Euryarchaeota Thermoplasmata E2 16 Bacteria Proteobacteria Clostridia Clostridiales 16 Bacteria Proteobacteria Thermoplasmata E2 5 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 15 Bacteria Proteobacteria Thermoplasmata E2 DHVEG 46 Bacteria Firmicutes Thermoplasmata E2 DHVEG 5 Bacteria Proteobacteria Clostridia Clostridiales Methylophilaceae 30 Bacteria Firmicutes Clostridia Clostridiales 4 Bacteria Proteobacteria Gammaproteobacteria Clostridiales Legionellaceae 6760 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 14 Bacteria Firmicutes Clostridia Clostridiales Bacillaceae 29 Bacteria Proteobacteria Clostridia Clostridiales DHVEG 6 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 33 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 182 Bacteria Proteobacteria Clostridia Clostridiales 5 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 12 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 8 Bacteria Crenarchaeota Thermoprotei Clostridiales Rhodospirillaceae 14 Bacteria Proteobacteria Thermoplasmata E2 13 Bacteria Proteobacteria Thermoplasmata E2 DHVEG 165 Bacteria Euryarchaeota Thermoplasmata E2 Ruminococcaceae 85 Bacteria Proteobacteria Clostridia Clostridiales Lachnospiraceae 59 Bacteria Proteobacteria Clostridia Clostridiales Halomonadaceae Candidatus_Portiera 11 Bacteria Firmicutes Clostridia Clostridiales Veillonellaceae 91 Bacteria Proteobacteria Thermoplasmata E2 vadinCA11 8 Bacteria Firmicutes Clostridia Clostridiales Bacillus 350 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 18 Bacteria Cyanobacteria Chloroplast Rickettsiales mitochondria 104 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 12 Bacteria Firmicutes Clostridia Clostridiales 24 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 80 Bacteria Firmicutes Thermoplasmata E2 DHVEG 28 Bacteria Firmicutes Thermoplasmata E2 Streptomycetaceae Streptomyces 697 Bacteria Proteobacteria Chloroplast Clostridiales 63 Bacteria Proteobacteria Alphaproteobacteria E2 Ruminococcaceae 422 Bacteria Euryarchaeota Thermoplasmata E2 Cenarchaeaceae Nitrosopumilus Nitrosopumilus_pIVWA5 133 Bacteria Firmicutes Clostridia E2 Marine_group_II 4 Bacteria Proteobacteria Clostridia Clostridiales 4 Bacteria Proteobacteria Alphaproteobacteria Clostridiales Ruminococcaceae 7 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 67 Bacteria Firmicutes Clostridia Clostridiales 3 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 18 Bacteria Proteobacteria Alphaproteobacteria Clostridiales Ruminococcaceae 456 Bacteria Firmicutes Clostridia Clostridiales 35 Bacteria Proteobacteria Mollicutes E2 Acholeplasmataceae 153 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 52 Bacteria Proteobacteria Clostridia Clostridiales Anaeroplasmataceae Asteroleplasma 27 Bacteria Firmicutes Thermoplasmata E2 57 Bacteria Firmicutes Clostridia Clostridiales 16 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 31 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 16 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 4 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 8 Bacteria Firmicutes Clostridia Clostridiales 15 Bacteria Proteobacteria Clostridia Clostridiales DHVEG 6 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 22 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 57 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 590 Bacteria Euryarchaeota Thermoplasmata E2 8 Bacteria Proteobacteria Clostridia Clostridiales Marine_group_II 5 Bacteria Firmicutes Clostridia Clostridiales Marine_group_II 10 Bacteria Euryarchaeota Clostridia Clostridiales DHVEG 40 Bacteria Proteobacteria Thermoplasmata E2 DHVEG 12 Bacteria Euryarchaeota Thermoplasmata E2 vadinCA11 9 Bacteria Proteobacteria Alphaproteobacteria Clostridiales mitochondria 8 Bacteria Proteobacteria Alphaproteobacteria Clostridiales 18 Bacteria Proteobacteria Clostridia Clostridiales 18 Bacteria Euryarchaeota Thermoplasmata E2 Ruminococcaceae 41 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 703 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Thermogymnomonas 35 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 152 Bacteria Firmicutes Bacilli Actinomycetales Bacillaceae 3 Bacteria Proteobacteria Clostridia Clostridiales Nitrososphaeraceae Candidatus_Nitrososphaera 90 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 20 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 16 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 68 Bacteria Euryarchaeota Thermoplasmata E2 51 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 10 Bacteria Firmicutes Clostridia Clostridiales 614 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 98 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 155 Bacteria Euryarchaeota Thermoplasmata E2 Ruminococcaceae 2951 Bacteria Firmicutes Clostridia Clostridiales 161 Bacteria Firmicutes Thermoplasmata E2 DHVEG 15 Bacteria Firmicutes Bacilli Clostridiales 75 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 11 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 85 Bacteria Bacteroidetes Bacteroidia Bacteroidales S24 30 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 182 Bacteria Euryarchaeota Thermoplasmata E2 6 Bacteria Proteobacteria Alphaproteobacteria Bacteroidales 80 Bacteria Firmicutes Thermoplasmata E2 Marine_group_II 25 Bacteria Proteobacteria Gammaproteobacteria E2 Pseudomonas 35 Bacteria Firmicutes Clostridia Clostridiales 40 Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae 7 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Faecalibacterium Faecalibacterium_prausnitzii 26 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 6 Bacteria Firmicutes Clostridia Clostridiales Cenarchaeaceae Nitrosopumilus Nitrosopumilus_pIVWA5 124 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 36 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 109 Bacteria Proteobacteria Clostridia E2 Methanomassiliicoccus 10 Bacteria Proteobacteria Thermoplasmata E2 7 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 3 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae RFN20 12 Bacteria Proteobacteria Alphaproteobacteria E2 DHVEG 34 Bacteria Proteobacteria Bacilli Clostridiales Bacillaceae 5 Bacteria Firmicutes Clostridia Clostridiales Marine_group_II 10 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 13 Bacteria Firmicutes Clostridia Clostridiales Xenococcaceae 6 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 14 Bacteria Proteobacteria Thermoplasmata E2 10 Bacteria Proteobacteria Clostridia Clostridiales Nitrososphaeraceae Candidatus_Nitrososphaera 21 Bacteria Euryarchaeota Thermoplasmata E2 3034 Bacteria Proteobacteria Thermoplasmata E2 Ruminococcaceae 32 Bacteria Proteobacteria Gammaproteobacteria Clostridiales 14 Bacteria Euryarchaeota Thermoplasmata E2 24 Bacteria Proteobacteria Thermoplasmata E2 Erythrobacteraceae 7 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 16 Bacteria Firmicutes Thermoplasmata E2 DHVEG 13 Bacteria Firmicutes Bacilli Clostridiales Lactobacillaceae Lactobacillus 594 Bacteria Firmicutes Clostridia Clostridiales Erysipelotrichaceae 10 Bacteria Firmicutes Clostridia Clostridiales 66 Bacteria Firmicutes Clostridia Clostridiales DHVEG 49 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 11 Bacteria Firmicutes Thermoplasmata E2 TMEG 39 Bacteria Proteobacteria Clostridia Clostridiales 8 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 6 Bacteria Firmicutes Clostridia Clostridiales 4 Bacteria Proteobacteria Thermoplasmata E2 Cytophagaceae Hymenobacter 100 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 5 Bacteria Proteobacteria Gammaproteobacteria 387 Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae 3 Bacteria Firmicutes Clostridia Clostridiales 35 Bacteria Proteobacteria Clostridia Clostridiales Veillonellaceae 10 Bacteria Firmicutes Clostridia Clostridiales 16 Bacteria Proteobacteria Thermoplasmata Clostridiales Mycoplasmataceae Mycoplasma 7 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 42 Bacteria Firmicutes Clostridia Clostridiales Thermogymnomonas 25 Bacteria Proteobacteria Thermoplasmata E2 Mycoplasmataceae Mycoplasma 3574 Bacteria Firmicutes Clostridia Clostridiales 27 Bacteria Proteobacteria Clostridia E2 28 Bacteria Euryarchaeota Thermoplasmata E2 DHVEG 39 Bacteria Proteobacteria Clostridia Clostridiales 15 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 3 Bacteria Proteobacteria Thermoplasmata E2 DHVEG 11 Bacteria Firmicutes Bacilli Bacillales Streptococcaceae Streptococcus 27 Bacteria Euryarchaeota Thermoplasmata E2 17 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 10 Bacteria Firmicutes Bacilli Clostridiales Bacillaceae Bacillus 12 Bacteria Proteobacteria Alphaproteobacteria E2 Sphingomonadaceae 4 Bacteria Proteobacteria Alphaproteobacteria Clostridiales Sphingomonadaceae 8 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 7 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 58 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae Faecalibacterium Faecalibacterium_prausnitzii 37 Bacteria Firmicutes Clostridia Clostridiales 18 Bacteria Firmicutes Clostridia Clostridiales Verrucomicrobiaceae 313 Bacteria Proteobacteria Thermoplasmata E2 vadinCA11 4 Bacteria Proteobacteria Gammaproteobacteria E2 Pseudomonadaceae Mycoplasma 27 Bacteria Actinobacteria Actinobacteria Actinomycetales Microbacteriaceae Bifidobacterium 490 Bacteria Euryarchaeota Alphaproteobacteria E2 DHVEG 677 Bacteria Proteobacteria Alphaproteobacteria E2 mitochondria 18 Bacteria Proteobacteria Clostridia Clostridiales Cenarchaeaceae Nitrosopumilus 39 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 15 Bacteria Proteobacteria Clostridia Clostridiales TMEG 26 Bacteria Firmicutes Clostridia E2 Ruminococcaceae 8 Bacteria Proteobacteria Alphaproteobacteria Clostridiales mitochondria 17 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 20 Bacteria Proteobacteria Clostridia Clostridiales Flavobacteriaceae 63 Bacteria Proteobacteria Clostridia Clostridiales 23 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 77 Bacteria Euryarchaeota Thermoplasmata E2 vadinCA11 57 Bacteria Proteobacteria Alphaproteobacteria E2 3 Bacteria Proteobacteria Alphaproteobacteria E2 Sphingomonadaceae 15 Bacteria Firmicutes Clostridia Clostridiales 3 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 4 Bacteria Euryarchaeota Thermoplasmata E2 TMEG 21 Bacteria Euryarchaeota Thermoplasmata E2 Marine_group_II 34 Bacteria Proteobacteria Alphaproteobacteria Clostridiales mitochondria 5 Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae MB11C04 27 Bacteria Euryarchaeota Thermoplasmata E2 3 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 6 Bacteria Proteobacteria Clostridia Clostridiales 19 Bacteria Firmicutes Clostridia Clostridiales 3 Bacteria Proteobacteria Thaumarchaeota Cenarchaeales Cenarchaeaceae Nitrosopumilus 4 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 67 Bacteria Firmicutes Planctomycetia Clostridiales Ruminococcaceae Archaeoglobus 8 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 14 Bacteria Proteobacteria Clostridia Clostridiales Spirochaetaceae 4 Bacteria Proteobacteria Clostridia Clostridiales Ruminococcaceae 11 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella 10 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 5 Bacteria Proteobacteria Clostridia Clostridiales 19 Bacteria Proteobacteria Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum 4 Bacteria Proteobacteria Deltaproteobacteria Clostridiales 3 Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae 8 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcus 12 Bacteria Proteobacteria Betaproteobacteria Flavobacteriales Flavobacteriaceae 81 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae Faecalibacterium Faecalibacterium_prausnitzii 5 Bacteria Firmicutes Clostridia Clostridiales Erysipelotrichaceae 5 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 3 Bacteria Bacteroidetes Bacteroidia Bacteroidales Bifidobacteriaceae Bifidobacterium 3 Bacteria Proteobacteria Bacteroidia Bacteroidales 5 Bacteria Firmicutes Bacteroidia Bacteroidales 3 Bacteria Verrucomicrobia Verruco WCHB1 5 Bacteria Actinobacteria Actinobacteria Actinomycetales Bifidobacteriaceae Bifidobacterium 5 Bacteria Proteobacteria Clostridia Clostridiales Gemmataceae 11 Bacteria Actinobacteria Actinobacteria Actinomycetales Prevotellaceae Prevotella 8 Bacteria Bacteroidetes Clostridia Bacteroidales Corynebacteriaceae Corynebacterium 4 Bacteria Bacteroidetes Bacilli Bacillales Bacillaceae 4 Bacteria Actinobacteria Actinobacteria Actinomycetales S24 6 Bacteria Proteobacteria Alphaproteobacteria Actinomycetales Nocardioidaceae 28 Bacteria Proteobacteria Clostridia Clostridiales Pseudanabaenaceae 14 Bacteria Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Glaciecola 7 Bacteria Proteobacteria Gammaproteobacteria Clostridiales Neisseriaceae Neisseria 12 Bacteria Planctomycetes Phycisphaerae mle1 3 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 4 Bacteria Actinobacteria Actinobacteria Actinomycetales Actinomycetaceae Actinomyces 6 Bacteria Firmicutes Clostridia Clostridiales Spirochaetaceae Treponema 4 Bacteria Bacteroidetes Bacteroidia Bacteroidales Cyclobacteriaceae 9 Bacteria Firmicutes Clostridia Clostridiales 3 Bacteria Proteobacteria Deltaproteobacteria Actinomycetales Actinomycetaceae Actinomyces 7 Bacteria Actinobacteria Actinobacteria Actinomycetales Micromonosporaceae Catellatospora 4 Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae 3 Bacteria Proteobacteria Bacteroidia Bacteroidales S24 5 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus 9 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae