8 Bacteria Proteobacteria Gammaproteobacteria Clostridiales Ruminococcaceae 93 Archaea YLA114 35 Bacteria Proteobacteria Phycisphaerae Clostridiales LCP 10959 Archaea Crenarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae 3521 Archaea Crenarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae Nitrosopumilus 52992 Archaea Crenarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae Nitrosopumilus 6866 Archaea Crenarchaeota Thaumarchaeota Nitrososphaerales Nitrososphaeraceae Candidatus_Nitrososphaera 3208 Archaea Crenarchaeota Thaumarchaeota Nitrososphaerales Nitrososphaeraceae Candidatus_Nitrososphaera 9 Archaea WCHD3 20 Bacteria Proteobacteria Alphaproteobacteria Rickettsiales mitochondria 5 Archaea WCHD3 452 Archaea WCHD3 341 Archaea Crenarchaeota MHVG 10 Archaea WCHD3 1517 Bacteria Planctomycetes Planctomycetia Pirellulales Pirellulaceae 2988 Bacteria Chloroflexi Anaerolineae S0208 15 Archaea WCHD3 13 Archaea WCHD3 21 Archaea WCHD3 108 Archaea WCHD3 5 Archaea WCHD3 6 Archaea WCHD3 18 Archaea YLA114 18 Archaea WCHD3 13 Archaea YLA114 43 Archaea WCHD3 12 Archaea WCHD3 3 Archaea WCHD3 5 Archaea YLA114 5 Archaea WCHD3 836 Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterales Syntrophobacteraceae 328 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 9 Archaea WCHD3 79 Archaea WCHD3 6 Archaea WCHD3 10 Archaea WCHD3 6 Archaea WCHD3 48 Archaea Euryarchaeota YLA114 19 Archaea YLA114 9 Archaea YLA114 13 Archaea YLA114 80 Archaea YLA114 201 Archaea YLA114 38 Archaea WCHD3 8 Archaea YLA114 12 Archaea YLA114 3 Archaea YLA114 14 Archaea YLA114 8 Archaea Euryarchaeota Methanomicrobia Methanosarcinales 18 Archaea WCHD3 19 Archaea YLA114 5 Archaea YLA114 12 Archaea YLA114 3 Archaea YLA114 147 Archaea YLA114 13 Archaea Euryarchaeota Methanomicrobia Methanosarcinales 8 Archaea YLA114 8 Archaea WCHD3 43 Archaea Crenarchaeota MHVG 11 Archaea Euryarchaeota YLA114 5 Archaea YLA114 12 Archaea YLA114 37 Archaea Euryarchaeota YLA114 6 Archaea YLA114 11 Archaea YLA114 11 Archaea YLA114 9 Archaea YLA114 14 Archaea YLA114 11 Archaea YLA114 4 Archaea Euryarchaeota Methanobacteria Methanobacteriales WSA2 16 Archaea YLA114 8 Archaea YLA114 22 Archaea YLA114 16 Archaea YLA114 18 Archaea Euryarchaeota YLA114 6 Archaea YLA114 4 Archaea YLA114 23 Bacteria Crenarchaeota MHVG 4 Bacteria OP3 PBS 19 Archaea WCHD3 20 Archaea YLA114 124 Archaea YLA114 5 Archaea pMC2A384 4 Archaea YLA114 19 Archaea YLA114 13 Archaea YLA114 21 Archaea WCHD3 23 Archaea YLA114 36 Archaea YLA114 19 Archaea YLA114 8 Archaea YLA114 3 Archaea YLA114 7 Archaea YLA114 18 Archaea WCHD3 8 Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium 8 Archaea YLA114 9 Archaea YLA114 10 Archaea YLA114 221 Archaea YLA114 7 Archaea YLA114 5 Archaea YLA114 49 Archaea YLA114 8 Archaea YLA114 25 Archaea WCHD3 6 Archaea YLA114 15 Archaea YLA114 3 Archaea YLA114 96 Archaea YLA114 24 Archaea YLA114 17 Archaea YLA114 5 Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Natronomonas 23 Archaea YLA114 14 Archaea YLA114 5 Archaea YLA114 29 Archaea YLA114 73 Archaea YLA114 24 Archaea YLA114 223 Archaea YLA114 39 Archaea YLA114 5 Archaea Euryarchaeota Methanomicrobia Methanosarcinales 8 Archaea WCHD3 51 Archaea YLA114 17 Archaea WCHD3 17 Archaea YLA114 71 Archaea YLA114 17 Archaea YLA114 15 Archaea Euryarchaeota Methanobacteria Methanobacteriales 14 Archaea YLA114 25 Archaea YLA114 8 Archaea YLA114 10 Archaea YLA114 31 Archaea YLA114 9 Archaea YLA114 15 Archaea YLA114 37 Archaea YLA114 22 Archaea YLA114 12 Archaea WCHD3 15 Archaea WCHD3 5 Archaea YLA114 29 Archaea YLA114 8 Archaea YLA114 7 Archaea WCHD3 20 Archaea YLA114 7 Archaea YLA114 10 Archaea YLA114 502 Archaea YLA114 16 Archaea Euryarchaeota YLA114 15 Archaea YLA114 3 Archaea YLA114 12 Archaea YLA114 8 Archaea YLA114 8 Archaea YLA114 28 Archaea YLA114 6 Archaea YLA114 6 Archaea YLA114 24 Archaea YLA114 4 Bacteria OP3 PBS 11 Archaea YLA114 5 Archaea YLA114 6 Archaea YLA114 18 Archaea YLA114 9 Archaea YLA114 76 Archaea YLA114 10 Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Natronomonas 12 Archaea YLA114 3 Archaea YLA114 117 Archaea Euryarchaeota Thermoplasmata E2 9 Archaea YLA114 7 Archaea YLA114 121 Archaea YLA114 10 Archaea WCHD3 7 Archaea YLA114 47 Archaea YLA114 9 Archaea YLA114 4 Archaea WCHD3 254 Archaea YLA114 11 Archaea YLA114 11 Archaea YLA114 12 Archaea YLA114 10 Archaea YLA114 7 Archaea Crenarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae 8 Archaea YLA114 51 Archaea YLA114 24 Archaea YLA114 14 Archaea YLA114 22 Archaea YLA114 5 Archaea YLA114 9 Archaea YLA114 3 Archaea YLA114 8 Archaea YLA114 15 Archaea Euryarchaeota YLA114 12 Archaea YLA114 5 Archaea YLA114 5 Bacteria OP3 PBS 8 Archaea YLA114 38 Archaea YLA114 12 Archaea YLA114 12 Archaea YLA114 32 Archaea YLA114 7 Archaea YLA114 11 Archaea YLA114 25 Bacteria OP3 PBS 4 Archaea YLA114 49 Archaea YLA114 49 Archaea YLA114 17 Archaea YLA114 34 Archaea YLA114 61 Archaea YLA114 7 Archaea YLA114 3 Archaea YLA114 8 Archaea YLA114 7 Archaea WCHD3 5 Archaea YLA114 6 Archaea YLA114 14 Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae ArcF12 4 Archaea WCHD3 52 Archaea YLA114 5 Archaea YLA114 4 Archaea YLA114 27 Archaea YLA114 9 Archaea YLA114 32 Archaea WCHD3 14 Archaea YLA114 10 Archaea WCHD3 17 Archaea WCHD3 4 Bacteria OP3 PBS 3 Archaea YLA114 7 Archaea YLA114 3 Archaea WCHD3 18 Archaea YLA114 40 Archaea YLA114 6 Archaea YLA114 10 Archaea WCHD3 39 Archaea Euryarchaeota Methanomicrobia Archaeoglobales Archaeoglobaceae Archaeoglobus 15 Archaea YLA114 8 Archaea WCHD3 8 Archaea WCHD3 8 Archaea YLA114 4 Archaea YLA114 17 Archaea YLA114 6 Archaea WCHD3 71 Archaea YLA114 7 Archaea YLA114 15 Archaea YLA114 44 Archaea YLA114 5 Archaea Euryarchaeota Methanomicrobia 5 Archaea YLA114 6 Archaea YLA114 9 Archaea Euryarchaeota YLA114 157 Archaea YLA114 17 Archaea WCHD3 5 Archaea YLA114 27 Archaea YLA114 5 Archaea YLA114 22 Archaea YLA114 28 Archaea YLA114 3 Archaea YLA114 23 Archaea YLA114 9 Archaea WCHD3 9 Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina 9 Archaea YLA114 4 Archaea YLA114 22 Archaea YLA114 29 Archaea YLA114 4 Archaea WCHD3 3 Archaea YLA114 7 Archaea YLA114 22 Archaea YLA114 6 Archaea YLA114 3 Archaea YLA114 8 Archaea YLA114 47 Archaea YLA114 9 Archaea YLA114 4 Archaea YLA114 9 Archaea YLA114 8 Archaea YLA114 8 Archaea YLA114 7 Archaea YLA114 19 Archaea WCHD3 9 Archaea YLA114 17 Archaea YLA114 4 Archaea YLA114 34 Archaea YLA114 3 Archaea WCHD3 3 Archaea YLA114 8 Archaea YLA114 7 Archaea Euryarchaeota YLA114 5 Archaea YLA114 4 Archaea WCHD3 33 Archaea YLA114 6 Archaea YLA114 4 Archaea YLA114 47 Archaea WCHD3 18 Archaea YLA114 3 Archaea YLA114 7 Archaea YLA114 13 Archaea YLA114 5 Archaea YLA114 39 Archaea YLA114 20 Bacteria Caldithrix Caldithrixae Caldithrixales BA059 11 Archaea YLA114 15 Archaea YLA114 18 Archaea WCHD3 5 Archaea YLA114 9 Archaea YLA114 58 Archaea YLA114 18 Archaea YLA114 7 Archaea YLA114 10 Archaea Euryarchaeota Methanomicrobia Methanosarcinales 46 Archaea Euryarchaeota Methanomicrobia Methanobacteriales Methanosarcinaceae Methanosarcina 8 Archaea YLA114 24 Archaea YLA114 4 Archaea YLA114 11 Archaea YLA114 6 Archaea YLA114 4 Archaea YLA114 15 Archaea WCHD3 5 Archaea YLA114 13 Archaea WCHD3 8 Archaea YLA114 8 Archaea YLA114 4 Archaea YLA114 17 Archaea YLA114 21 Archaea YLA114 17 Archaea YLA114 17 Archaea WCHD3 11 Archaea YLA114 3 Archaea YLA114 12 Archaea WCHD3 23 Archaea WCHD3 7 Archaea YLA114 490 Archaea Crenarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae Nitrosopumilus 11 Archaea Euryarchaeota DSEG ArcA07 109 Archaea Crenarchaeota MBGB 4 Archaea WCHD3 18 Bacteria Verrucomicrobia 488 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 28 Bacteria Planctomycetes 21 Bacteria Verrucomicrobia 29 Archaea YLA114 100 Archaea Crenarchaeota Thaumarchaeota Nitrososphaerales Nitrososphaeraceae Candidatus_Nitrososphaera Candidatus_Nitrososphaera_SCA1145 383 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 417 Bacteria Chloroflexi Anaerolineae S0208 22 Archaea WCHD3 40 Archaea Crenarchaeota MBGA 64 Bacteria Planctomycetes OM190 CL500 24 Archaea Euryarchaeota Thermoplasmata E2 DHVEG 5 Bacteria OP1 98 Bacteria Acidobacteria Acidobacteria CCU21 4 Bacteria Verrucomicrobia Opitutae Pelagicoccus 37 Bacteria Planctomycetes OM190 CL500 4 Bacteria Verrucomicrobia auto67_4W 29 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 12 Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Desulfuromonadaceae 13 Bacteria KSB1 Ucn15732 132 Archaea Crenarchaeota Thaumarchaeota Nitrososphaerales Nitrososphaeraceae Candidatus_Nitrososphaera Candidatus_Nitrososphaera_SCA1170 5 Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Piscirickettsiaceae 76 Archaea Crenarchaeota Thaumarchaeota Nitrososphaerales Nitrososphaeraceae Candidatus_Nitrososphaera 8 Bacteria Proteobacteria Gammaproteobacteria 117 Archaea YLA114 10 Bacteria Planctomycetes OM190 CL500 6 Archaea Euryarchaeota Thermoplasmata E2 DHVEG 81 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 7 Archaea Crenarchaeota Thaumarchaeota Nitrososphaerales Nitrososphaeraceae Candidatus_Nitrososphaera 67 Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterales Syntrophobacteraceae 60 Archaea Crenarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae 5 Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae 32 Archaea WCHD3 21 Bacteria Chloroflexi Anaerolineae S0208 9 Archaea Crenarchaeota Thaumarchaeota Nitrososphaerales Nitrososphaeraceae Candidatus_Nitrososphaera Candidatus_Nitrososphaera_gargensis 23 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 8 Archaea WCHD3 4 Bacteria Planctomycetes OM190 CL500 56 Bacteria OP3 PBS 23 Bacteria PAUC34f 5 Bacteria Planctomycetes C6 Ucm1571 153 Bacteria Planctomycetes OM190 CL500 95 Bacteria Acidobacteria Acidobacteria iii1 9 Archaea Crenarchaeota Thaumarchaeota Nitrososphaerales Nitrososphaeraceae Candidatus_Nitrososphaera 3 Archaea Crenarchaeota MCG 19 Bacteria Planctomycetes OM190 CL500 4 Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae 9 Bacteria Proteobacteria Deltaproteobacteria Myxococcales 60 Archaea Crenarchaeota MCG B10 58 Bacteria Acidobacteria Acidobacteria CCU21 42 Archaea YLA114 150 Archaea Crenarchaeota MCG B10 314 Bacteria Acidobacteria Acidobacteria iii1 8 Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Pelobacteraceae 6 Archaea WCHD3 32 Archaea WCHD3 23 Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae 8 Bacteria Verrucomicrobia 34 Archaea YLA114 8 Archaea Euryarchaeota Thermoplasmata E2 DHVEG 17 Bacteria Proteobacteria Deltaproteobacteria Myxococcales 12 Bacteria Proteobacteria Gammaproteobacteria Legionellales Legionellaceae 50 Bacteria Proteobacteria Deltaproteobacteria Myxococcales 19 Bacteria Planctomycetes C6 MVS 29 Bacteria Verrucomicrobia Opitutae Opitutales Opitutaceae Opitutus 11 Archaea WCHD3 6 Bacteria Planctomycetes Planctomycetia Pirellulales Pirellulaceae 15 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 28 Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae 4 Bacteria Acidobacteria Solibacteres Solibacterales PAUC26f 9 Bacteria Proteobacteria Deltaproteobacteria Myxococcales 22 Archaea Crenarchaeota Thaumarchaeota Nitrososphaerales Nitrososphaeraceae Candidatus_Nitrososphaera 12 Bacteria Planctomycetes OM190 CL500 12 Bacteria Bacteroidetes Saprospiraceae 44 Bacteria Planctomycetes OM190 CL500 4 Bacteria Verrucomicrobia Opitutae Opitutales Opitutaceae 6 Bacteria Bacteroidetes Rhodothermaceae 4 Bacteria Bacteroidetes Saprospiraceae 7 Bacteria OP3 PBS 109 Archaea Crenarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae Nitrosopumilus 27 Archaea Crenarchaeota Thaumarchaeota Nitrososphaerales Nitrososphaeraceae Candidatus_Nitrososphaera 4 Archaea WCHD3 6 Bacteria Planctomycetes 8 Bacteria Verrucomicrobia 9 Archaea WCHD3 542 Bacteria Chloroflexi Anaerolineae S0208 17 Archaea WCHD3 3 Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae 10 Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae 9 Bacteria Chloroflexi Anaerolineae SBR1031 SJA 52 Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae 13 Archaea YLA114 48 Bacteria Verrucomicrobia 5 Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Piscirickettsiaceae 6 Bacteria Proteobacteria Gammaproteobacteria Chromatiales Coxiellaceae 9 Bacteria Proteobacteria Deltaproteobacteria 8 Bacteria Proteobacteria Gammaproteobacteria Thiotrichales Piscirickettsiaceae Thiomicrospira 15 Bacteria Planctomycetes Phycisphaerae mle1 36 Archaea Euryarchaeota MCG YLA114 14 Bacteria Verrucomicrobia Verrucomicrobiae Verrucomicrobiales Verrucomicrobiaceae 25 Bacteria Planctomycetes OM190 CL500 14 Archaea Crenarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae Nitrosopumilus 5 Bacteria Proteobacteria Gammaproteobacteria HOC36 368 Bacteria Chloroflexi Anaerolineae S0208 5 Bacteria Proteobacteria Deltaproteobacteria 7 Bacteria Chloroflexi Anaerolineae S0208 3 Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae 5 Bacteria Planctomycetes OM190 CL500 4 Bacteria Proteobacteria Deltaproteobacteria 6 Bacteria Verrucomicrobia 4 Bacteria Planctomycetes 6 Archaea Euryarchaeota Thermoplasmata E2 76 Archaea YLA114 8 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 4 Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae 14 Bacteria Verrucomicrobia auto67_4W 6 Bacteria Planctomycetes Phycisphaerae Phycisphaerales Phycisphaeraceae 11 Archaea Euryarchaeota Thermoplasmata E2 Marine_group_II 12 Bacteria Acidobacteria Acidobacteria iii1 8 Archaea Euryarchaeota Thermoplasmata E2 DHVEG 191 Bacteria Proteobacteria Gammaproteobacteria Chromatiales 9 Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae 34 Bacteria Verrucomicrobia Opitutae 8 Bacteria Planctomycetes OM190 CL500 15 Archaea YLA114 23 Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Desulfuromonadaceae 28 Archaea Euryarchaeota Thermoplasmata E2 19 Bacteria Proteobacteria Alphaproteobacteria 8 Bacteria OP3 PBS 67 Archaea Euryarchaeota Methanobacteria Methanobacteriales pMC1 pMC1A4 10 Bacteria Planctomycetes OM190 CL500 35 Archaea Crenarchaeota MBGB 61 Archaea Crenarchaeota Thaumarchaeota Nitrososphaerales Nitrososphaeraceae Candidatus_Nitrososphaera 72 Archaea YLA114 6 Bacteria Acidobacteria BPC102 B110 985 Bacteria Proteobacteria Gammaproteobacteria Clostridiales 21 Bacteria OP3 PBS 37 Bacteria NC10 wb1 295 Bacteria Firmicutes Bacilli Bacillales Ruminococcaceae 4 Archaea YLA114 39 Bacteria PAUC34f 9 Bacteria Planctomycetes Planctomycetia Pirellulales Pirellulaceae 8 Archaea Euryarchaeota DSEG ArcA07 8 Bacteria Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae 5 Archaea YLA114 30 Archaea YLA114 24 Bacteria Planctomycetes Planctomycetia Pirellulales Pirellulaceae 11 Bacteria Firmicutes Clostridia Clostridiales Ruminococcaceae 6 Archaea Euryarchaeota YLA114 135 Bacteria Firmicutes Clostridia Clostridiales 6 Bacteria Tenericutes Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma 24 Archaea Euryarchaeota YLA114 48 Bacteria Firmicutes Clostridia Clostridiales Lachnospiraceae 21 Archaea YLA114 13 Archaea Crenarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae Nitrosopumilus 11 Archaea Crenarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae Nitrosopumilus 49 Bacteria Proteobacteria Gammaproteobacteria Clostridiales Pirellulaceae 8 Bacteria Euryarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae Nitrosopumilus 11 Archaea Crenarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae Nitrosopumilus 113 Bacteria Euryarchaeota Gammaproteobacteria Alteromonadales Colwelliaceae Archaeoglobus 8 Archaea Crenarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae Nitrosopumilus 451 Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium 36 Bacteria Proteobacteria Clostridia Clostridiales Entomoplasmataceae 247 Bacteria Planctomycetes Clostridia Acidobacteriales Acidobacteriaceae 19 Archaea Euryarchaeota DSEG Methanomicrobiales 164 Bacteria Euryarchaeota Clostridia Clostridiales Cenarchaeaceae Nitrosopumilus 14 Bacteria Euryarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae 240 Bacteria Crenarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae 8 Archaea Crenarchaeota Thaumarchaeota Cenarchaeales Cenarchaeaceae Nitrosopumilus 6 Bacteria Planctomycetes Planctomycetia Gemmatales Planctomycetaceae Planctomyces