## Sat Jan  4 00:52:43 2025
## emapper-2.1.12
## /data/home/zhuyingjie/miniforge3/envs/eggnog/bin/emapper.py -i /data/home/zhuyingjie/01_Project/01_metagenome/mangrove/mmseqs_cluster/PRJNA629394/SRR11734608/SRR11734608_p_cluster_rep_seq.fasta --output PRJNA629394_SRR11734608 --data_dir /data/software/eggnog_database -m diamond --sensmode fast --output_dir /data/home/zhuyingjie/01_Project/01_metagenome/mangrove/annotation --temp_dir /data/software/eggnog_database/temp --excel --dbmem --cpu 24
##
#query	seed_ortholog	evalue	score	eggNOG_OGs	max_annot_lvl	COG_category	Description	Preferred_name	GOs	EC	KEGG_ko	KEGG_Pathway	KEGG_Module	KEGG_Reaction	KEGG_rclass	BRITE	KEGG_TC	CAZy	BiGG_Reaction	PFAMs
k59_1435_1	4096.XP_009773064.1	7.42e-36	140.0	COG2801@1|root,KOG0017@2759|Eukaryota,37RRH@33090|Viridiplantae,3G8MV@35493|Streptophyta,44P0E@71274|asterids	35493|Streptophyta	L	DNA RNA polymerases superfamily protein	-	-	-	-	-	-	-	-	-	-	-	-	Asp_protease_2,RVT_1,Retrotrans_gag,rve
k59_9622_1	3847.GLYMA0405S00215.1	8.9e-49	162.0	COG0199@1|root,KOG1741@2759|Eukaryota,3896F@33090|Viridiplantae,3GY3H@35493|Streptophyta,4JWAW@91835|fabids	35493|Streptophyta	J	Ribosomal protein S14p/S29e	-	-	-	-	-	-	-	-	-	-	-	-	Ribosomal_S14
k59_5355_1	1123366.TH3_21514	5.74e-17	79.0	28HS3@1|root,2Z7ZE@2|Bacteria,1QH9A@1224|Proteobacteria,2TVB0@28211|Alphaproteobacteria,2JPPD@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_10698_1	13333.ERM98367	4.3e-111	333.0	COG0085@1|root,KOG0214@2759|Eukaryota,37HVP@33090|Viridiplantae,3G72V@35493|Streptophyta	35493|Streptophyta	K	rna polymerase	rpoB	GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0030880,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0061695,GO:1902494,GO:1990234	2.7.7.6	ko:K03043	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7
k59_11069_1	1566993.A0A0A7HER9_9CAUD	1.48e-14	80.5	4QEW8@10239|Viruses,4QTWI@28883|Caudovirales	28883|Caudovirales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_6794_2	445970.ALIPUT_01612	1.88e-68	221.0	COG0270@1|root,COG0270@2|Bacteria,4NJPP@976|Bacteroidetes,2FKYT@200643|Bacteroidia	976|Bacteroidetes	H	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	-	-	2.1.1.37	ko:K00558	ko00270,ko01100,ko05206,map00270,map01100,map05206	M00035	R04858	RC00003,RC00332	ko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036	-	-	-	DNA_methylase
k59_6794_5	1123367.C666_18385	3.08e-57	189.0	COG3179@1|root,COG3179@2|Bacteria,1RE5T@1224|Proteobacteria,2VSTB@28216|Betaproteobacteria	28216|Betaproteobacteria	S	chitinase	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_19
k59_6794_9	756280.M4PSK7_9CAUD	2.6e-23	94.7	4QGG7@10239|Viruses,4QXGW@35237|dsDNA viruses  no RNA stage,4QSB4@28883|Caudovirales,4QIVB@10662|Myoviridae	10662|Myoviridae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_3953_1	744980.TRICHSKD4_4956	1.98e-43	164.0	COG0503@1|root,COG3170@1|root,COG0503@2|Bacteria,COG3170@2|Bacteria	2|Bacteria	NU	translation initiation factor activity	apt	-	2.4.2.7,3.1.26.12	ko:K00759,ko:K02945,ko:K08086,ko:K08300,ko:K08301,ko:K20276	ko00230,ko01100,ko02024,ko03010,ko03018,map00230,map01100,map02024,map03010,map03018	M00178,M00394	R00190,R01229,R04378	RC00063	br01610,ko00000,ko00001,ko00002,ko01000,ko03009,ko03011,ko03019,ko04147	-	-	-	Pribosyltran
k59_2530_1	378806.STAUR_0608	1.26e-102	324.0	COG4676@1|root,COG4676@2|Bacteria,1NATM@1224|Proteobacteria	1224|Proteobacteria	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_398_1	50452.W0USV0	3.42e-92	289.0	28JJ8@1|root,2QRYE@2759|Eukaryota,37RH7@33090|Viridiplantae,3GCW8@35493|Streptophyta,3I0SM@3699|Brassicales	35493|Streptophyta	C	PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin	psaA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0009987,GO:0010287,GO:0015979,GO:0016020,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035	-	ko:K02689	ko00195,ko01100,map00195,map01100	M00163	-	-	ko00000,ko00001,ko00002,ko00194	-	-	-	PsaA_PsaB
k59_8598_1	743722.Sph21_0683	3.21e-71	230.0	COG3385@1|root,COG3385@2|Bacteria,4NIN4@976|Bacteroidetes,1IPK8@117747|Sphingobacteriia	976|Bacteroidetes	L	PFAM Transposase	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DUF4372
k59_10365_1	293826.Amet_2579	1.95e-14	79.3	COG0507@1|root,COG0507@2|Bacteria,1TQWH@1239|Firmicutes,24A8I@186801|Clostridia,36H5N@31979|Clostridiaceae	186801|Clostridia	L	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_3963_1	314225.ELI_14900	4.93e-94	282.0	COG2801@1|root,COG2801@2|Bacteria,1MVN5@1224|Proteobacteria,2TQK0@28211|Alphaproteobacteria,2K2F6@204457|Sphingomonadales	204457|Sphingomonadales	L	COG2801 Transposase and inactivated derivatives	-	-	-	-	-	-	-	-	-	-	-	-	HTH_21,rve,rve_3
k59_8948_1	3847.GLYMA13G11980.1	9.01e-62	213.0	2CUMQ@1|root,2RN4M@2759|Eukaryota,37U2D@33090|Viridiplantae,3GX5D@35493|Streptophyta,4JTXP@91835|fabids	35493|Streptophyta	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_5389_3	585543.HMPREF0969_02673	0.000109	47.0	COG0653@1|root,COG0653@2|Bacteria,4NF7C@976|Bacteroidetes,2FMVF@200643|Bacteroidia,4AMYA@815|Bacteroidaceae	976|Bacteroidetes	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane	secA	GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680	-	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4	-	-	Helicase_C,SEC-C,SecA_DEAD,SecA_PP_bind,SecA_SW
k59_3245_1	316274.Haur_2419	8.89e-10	63.2	COG4122@1|root,COG4122@2|Bacteria	2|Bacteria	E	O-methyltransferase activity	mycF	GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009058,GO:0009987,GO:0016740,GO:0016741,GO:0016999,GO:0017000,GO:0017144,GO:0030769,GO:0032259,GO:0044237,GO:0044249	2.1.1.101,2.1.1.307	ko:K05303,ko:K15996,ko:K19569	ko00522,ko01057,ko01130,map00522,map01057,map01130	M00773,M00784	R02858,R10958	RC00003,RC00466	ko00000,ko00001,ko00002,ko01000	-	-	-	TylF
k59_7173_2	460265.Mnod_2637	3.73e-116	341.0	2DT9W@1|root,32UUT@2|Bacteria,1NV5H@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_7173_3	1540257.JQMW01000009_gene3759	8.06e-24	93.2	2F2XD@1|root,33VSY@2|Bacteria,1UTUW@1239|Firmicutes,254EI@186801|Clostridia	186801|Clostridia	S	Nucleoside 2-deoxyribosyltransferase like	-	-	-	-	-	-	-	-	-	-	-	-	Nuc_deoxyri_tr2
k59_2172_1	272630.MexAM1_META1p3983	2.15e-44	146.0	2CRRJ@1|root,32SPH@2|Bacteria,1NYMT@1224|Proteobacteria,2UTVD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3307)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3307
k59_1820_2	340099.Teth39_1339	5.65e-08	57.0	COG3409@1|root,COG3409@2|Bacteria,1VDWB@1239|Firmicutes,24P7Z@186801|Clostridia,42H0E@68295|Thermoanaerobacterales	186801|Clostridia	M	PFAM Peptidoglycan-binding domain 1 protein	-	-	-	-	-	-	-	-	-	-	-	-	PG_binding_1
k59_7176_1	102107.XP_008223735.1	1.97e-107	331.0	COG1007@1|root,KOG4668@2759|Eukaryota,37P90@33090|Viridiplantae,3GBJ3@35493|Streptophyta,4JRH7@91835|fabids	35493|Streptophyta	C	A subunit of NADH dehydrogenase	ndhF	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464	1.6.5.3	ko:K05577	ko00190,ko01100,map00190,map01100	M00145	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	-	-	-	Proton_antipo_C,Proton_antipo_M,Proton_antipo_N
k59_8952_2	338963.Pcar_3052	2.74e-132	400.0	COG3666@1|root,COG3666@2|Bacteria,1N3QR@1224|Proteobacteria,42N7X@68525|delta/epsilon subdivisions,2WMM9@28221|Deltaproteobacteria	28221|Deltaproteobacteria	L	Transposase DDE domain	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DDE_Tnp_1_6,DUF772
k59_5549_2	1089548.KI783301_gene499	5.56e-08	58.9	COG1595@1|root,COG1595@2|Bacteria,1VSXS@1239|Firmicutes,4HUU6@91061|Bacilli	91061|Bacilli	K	DNA-templated transcription, initiation	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_7660_1	585503.HMPREF7545_1744	2.17e-14	79.3	2DBPZ@1|root,2ZABJ@2|Bacteria,1VJIG@1239|Firmicutes,4H5QI@909932|Negativicutes	909932|Negativicutes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_6211_1	536019.Mesop_3364	5.06e-07	60.1	COG5301@1|root,COG5301@2|Bacteria,1QW67@1224|Proteobacteria,2UGK8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	cellulose 1,4-beta-cellobiosidase activity	-	-	-	-	-	-	-	-	-	-	-	-	PTR
k59_9445_1	1304885.AUEY01000043_gene3625	6.26e-38	145.0	arCOG08054@1|root,2Z8AD@2|Bacteria,1NG22@1224|Proteobacteria	1224|Proteobacteria	S	Carbohydrate-binding domain-containing protein Cthe_2159	-	-	-	-	-	-	-	-	-	-	-	-	Cthe_2159
k59_8758_1	111780.Sta7437_3165	1.13e-16	80.5	COG0582@1|root,COG0582@2|Bacteria,1G5KE@1117|Cyanobacteria	1117|Cyanobacteria	L	viral genome integration into host DNA	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_5550_2	649747.HMPREF0083_05319	7.58e-125	374.0	COG1783@1|root,COG1783@2|Bacteria,1TRQP@1239|Firmicutes,4HDMY@91061|Bacilli,26WVX@186822|Paenibacillaceae	91061|Bacilli	S	Terminase RNAseH like domain	yqaT	-	-	ko:K06909	-	-	-	-	ko00000	-	-	-	Terminase_3,Terminase_3C
k59_869_1	710696.Intca_0348	2e-45	165.0	COG3666@1|root,COG3666@2|Bacteria,2IA0I@201174|Actinobacteria	201174|Actinobacteria	L	Protein involved in DNA binding, transposase activity and DNA transposition	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DDE_Tnp_1_6,DUF772
k59_7667_1	1416760.AYMS01000051_gene190	1.1e-11	65.9	COG3547@1|root,COG3547@2|Bacteria,4NIKY@976|Bacteroidetes,1HZCU@117743|Flavobacteriia	976|Bacteroidetes	L	Transposase IS116 IS110 IS902	-	-	-	-	-	-	-	-	-	-	-	-	DEDD_Tnp_IS110,Transposase_20
k59_9833_1	102129.Lepto7375DRAFT_0595	1.4e-16	85.1	COG0675@1|root,COG0675@2|Bacteria,1G0R7@1117|Cyanobacteria,1H74K@1150|Oscillatoriales	1117|Cyanobacteria	L	COG0675 Transposase and inactivated derivatives	-	-	-	ko:K07496	-	-	-	-	ko00000	-	-	-	HTH_OrfB_IS605,OrfB_IS605,OrfB_Zn_ribbon
k59_6897_3	908819.A0A0A0YQ88_9CAUD	2.19e-12	73.9	4QDTA@10239|Viruses,4QXN5@35237|dsDNA viruses  no RNA stage,4QUAN@28883|Caudovirales,4QIEV@10662|Myoviridae	10662|Myoviridae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_6897_4	756280.M4PRN3_9CAUD	2.07e-44	156.0	4QAYF@10239|Viruses,4QV6R@35237|dsDNA viruses  no RNA stage,4QPDV@28883|Caudovirales,4QHUM@10662|Myoviridae	10662|Myoviridae	S	Uncharacterized protein conserved in bacteria (DUF2313)	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_6897_5	51369.Q8LTA0_9CAUD	1.79e-26	107.0	4QAIU@10239|Viruses,4QUQC@35237|dsDNA viruses  no RNA stage,4QPDE@28883|Caudovirales,4QKM7@10699|Siphoviridae	10699|Siphoviridae	S	HNH endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_6897_6	1250232.JQNJ01000001_gene2908	9.49e-89	280.0	COG3299@1|root,COG3299@2|Bacteria	2|Bacteria	S	Baseplate J-like protein	-	-	-	-	-	-	-	-	-	-	-	-	Baseplate_J
k59_6897_7	1121904.ARBP01000007_gene3005	3.17e-24	114.0	COG2911@1|root,COG2931@1|root,COG3210@1|root,COG3391@1|root,COG3420@1|root,COG4733@1|root,COG4886@1|root,COG2911@2|Bacteria,COG2931@2|Bacteria,COG3210@2|Bacteria,COG3391@2|Bacteria,COG3420@2|Bacteria,COG4733@2|Bacteria,COG4886@2|Bacteria,4PHVF@976|Bacteroidetes,47SD5@768503|Cytophagia	976|Bacteroidetes	P	Leucine rich repeat	-	-	-	-	-	-	-	-	-	-	-	-	LRR_8,Laminin_G_3,VCBS
k59_4135_1	102107.XP_008224000.1	7.01e-168	518.0	28JZI@1|root,2QSDY@2759|Eukaryota,37J4T@33090|Viridiplantae,3GC2Z@35493|Streptophyta,4JREA@91835|fabids	35493|Streptophyta	U	Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein-conducting channel at the inner envelope	ycf1	GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0008104,GO:0008150,GO:0008565,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0015031,GO:0015833,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0033036,GO:0042170,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705	-	-	-	-	-	-	-	-	-	-	Ycf1
k59_10511_3	697281.Mahau_0075	2.94e-15	84.3	COG2369@1|root,COG2369@2|Bacteria,1UKR1@1239|Firmicutes,25G1M@186801|Clostridia	186801|Clostridia	K	cell adhesion	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_4495_1	67593.Physo126495	6.16e-14	65.5	2E3VD@1|root,2SAV9@2759|Eukaryota	2759|Eukaryota	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_10522_2	1527512.A0A088FBM0_9CAUD	2.33e-24	97.1	4QMBY@10699|Siphoviridae	10699|Siphoviridae	S	Domain of unknown function (DUF4326)	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_9853_2	298653.Franean1_3502	1.26e-13	75.1	COG0675@1|root,COG0675@2|Bacteria,2GM6K@201174|Actinobacteria	201174|Actinobacteria	L	Transposase	-	-	-	ko:K07496	-	-	-	-	ko00000	-	-	-	HTH_OrfB_IS605,OrfB_IS605,OrfB_Zn_ribbon
k59_4516_1	398512.JQKC01000053_gene2524	8.15e-34	128.0	2C8MZ@1|root,2ZA7T@2|Bacteria,1UFFD@1239|Firmicutes,24F4E@186801|Clostridia,3WN3M@541000|Ruminococcaceae	186801|Clostridia	S	Family of unknown function (DUF5309)	-	-	-	-	-	-	-	-	-	-	-	-	DUF5309
k59_1634_2	1097668.BYI23_E000680	8.14e-15	73.2	2EKFD@1|root,33E5I@2|Bacteria,1NHD6@1224|Proteobacteria,2W5HB@28216|Betaproteobacteria	28216|Betaproteobacteria	S	VRR-NUC domain	-	-	-	-	-	-	-	-	-	-	-	-	VRR_NUC
k59_4162_1	72664.XP_006397452.1	1.05e-88	290.0	2AKEG@1|root,2RZ9E@2759|Eukaryota,37V5P@33090|Viridiplantae,3GIUS@35493|Streptophyta	35493|Streptophyta	L	function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis	-	-	-	-	-	-	-	-	-	-	-	-	DUF825
k59_4162_2	29760.VIT_03s0038g02780.t01	1.59e-56	176.0	COG0089@1|root,2S1Z9@2759|Eukaryota,37VSJ@33090|Viridiplantae,3GJY5@35493|Streptophyta	35493|Streptophyta	J	ribosomal protein L23	rpl23	GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02892	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L23
k59_4162_3	57918.XP_004309325.1	1.87e-91	267.0	COG0090@1|root,KOG0438@2759|Eukaryota,37U85@33090|Viridiplantae,3GI8Y@35493|Streptophyta,4JP6U@91835|fabids	35493|Streptophyta	J	50S ribosomal protein	rpl2-A	GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02886	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L2
k59_570_2	908819.A0A0A0YPP8_9CAUD	3.47e-62	209.0	4QGRP@10239|Viruses,4R06F@35237|dsDNA viruses  no RNA stage,4QTU5@28883|Caudovirales,4QJHP@10662|Myoviridae	10662|Myoviridae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_570_3	908819.A0A0A0YUZ2_9CAUD	8.08e-51	181.0	4QCW8@10239|Viruses,4QZWJ@35237|dsDNA viruses  no RNA stage,4QQN8@28883|Caudovirales,4QJXW@10662|Myoviridae	10662|Myoviridae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_6725_1	91464.S7335_5608	2.91e-06	55.8	COG0553@1|root,COG0553@2|Bacteria,1G0S7@1117|Cyanobacteria,1GYJG@1129|Synechococcus	1117|Cyanobacteria	L	Superfamily II DNA RNA helicases, SNF2 family	hepA	-	-	-	-	-	-	-	-	-	-	-	DUF3670,Helicase_C,Intein_splicing,LAGLIDADG_3,SNF2_N
k59_7027_1	97139.C824_00570	7.86e-33	120.0	COG1943@1|root,COG1943@2|Bacteria,1V53Y@1239|Firmicutes,25CMQ@186801|Clostridia,36VU7@31979|Clostridiaceae	186801|Clostridia	L	Transposase IS200 like	-	-	-	-	-	-	-	-	-	-	-	-	Y1_Tnp
k59_6034_1	13333.ERN02870	9.04e-139	397.0	2CMAK@1|root,2QPT8@2759|Eukaryota,37MKA@33090|Viridiplantae,3GD5I@35493|Streptophyta	35493|Streptophyta	C	Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions	petA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464	-	ko:K02634	ko00195,ko01100,map00195,map01100	M00162	-	-	ko00000,ko00001,ko00002,ko00194	-	-	-	Apocytochr_F_C,Apocytochr_F_N,CemA
k59_7036_1	1121405.dsmv_0449	8.17e-65	216.0	COG4231@1|root,COG4231@2|Bacteria,1MUKS@1224|Proteobacteria,42N44@68525|delta/epsilon subdivisions,2WKYE@28221|Deltaproteobacteria,2MHUM@213118|Desulfobacterales	28221|Deltaproteobacteria	C	Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates	iorA-2	-	1.2.7.8	ko:K00179	-	-	-	-	br01601,ko00000,ko01000	-	-	-	Fer4,POR_N,TPP_enzyme_C
k59_2453_1	113395.AXAI01000001_gene3185	7.73e-41	158.0	COG1289@1|root,COG1289@2|Bacteria,1Q5JG@1224|Proteobacteria,2VBX6@28211|Alphaproteobacteria,3K2KA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Aromatic acid exporter family member 1	-	-	-	-	-	-	-	-	-	-	-	-	FUSC
k59_1055_1	13333.ERN02876	3.21e-161	466.0	28JJ8@1|root,2QRYE@2759|Eukaryota,37RH7@33090|Viridiplantae,3GCW8@35493|Streptophyta	35493|Streptophyta	C	PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin	psaA	-	-	ko:K02689	ko00195,ko01100,map00195,map01100	M00163	-	-	ko00000,ko00001,ko00002,ko00194	-	-	-	PsaA_PsaB
k59_4688_1	1232443.BAIA02000078_gene39	7.89e-30	122.0	COG0553@1|root,COG0553@2|Bacteria,1TPFZ@1239|Firmicutes,248ZJ@186801|Clostridia	186801|Clostridia	L	snf2 family	-	-	-	-	-	-	-	-	-	-	-	-	Helicase_C,SNF2_N
k59_4348_1	113395.AXAI01000008_gene803	7.44e-12	70.9	COG3299@1|root,COG3299@2|Bacteria,1MXKB@1224|Proteobacteria,2U8YD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Baseplate J-like protein	-	-	-	-	-	-	-	-	-	-	-	-	Baseplate_J
k59_2183_1	335543.Sfum_2600	6.65e-76	241.0	COG3547@1|root,COG3547@2|Bacteria,1NGR7@1224|Proteobacteria,42NNQ@68525|delta/epsilon subdivisions,2WM2H@28221|Deltaproteobacteria,2MSJJ@213462|Syntrophobacterales	28221|Deltaproteobacteria	L	PFAM transposase IS116 IS110 IS902 family protein	-	-	-	-	-	-	-	-	-	-	-	-	DEDD_Tnp_IS110,Transposase_20
k59_10756_1	331869.BAL199_23262	5.54e-58	182.0	COG3415@1|root,COG3415@2|Bacteria,1N7CS@1224|Proteobacteria,2UFAY@28211|Alphaproteobacteria,4BR0R@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	L	Transposase	-	-	-	-	-	-	-	-	-	-	-	-	HTH_23,HTH_32,HTH_33,HTH_Tnp_IS630
k59_10756_2	1150626.PHAMO_470056	5.46e-82	245.0	COG3335@1|root,COG3335@2|Bacteria,1P76X@1224|Proteobacteria,2U16U@28211|Alphaproteobacteria,2JSK6@204441|Rhodospirillales	204441|Rhodospirillales	L	Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	DDE_3
k59_7547_1	927677.ALVU02000001_gene686	1.29e-17	92.4	COG1511@1|root,COG1511@2|Bacteria	2|Bacteria	Q	domain protein	-	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	Gp58,TMP_2
k59_6472_1	42345.XP_008806059.1	2.1e-69	238.0	COG2801@1|root,KOG0017@2759|Eukaryota,37NRU@33090|Viridiplantae,3GGV0@35493|Streptophyta,3M4R8@4447|Liliopsida	35493|Streptophyta	L	transposition, RNA-mediated	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_9336_1	3880.AES69823	2.84e-129	403.0	28JJ8@1|root,2QRYE@2759|Eukaryota,37QY5@33090|Viridiplantae,3GX5Y@35493|Streptophyta,4JTQ6@91835|fabids	35493|Streptophyta	C	Photosystem I P700 chlorophyll a apoprotein	psaB	-	-	ko:K02690	ko00195,ko01100,map00195,map01100	M00163	-	-	ko00000,ko00001,ko00002,ko00194	-	-	-	PsaA_PsaB
k59_9336_2	59689.fgenesh1_pm.C_scaffold_2000580	2.81e-76	246.0	28JJ8@1|root,2QRYE@2759|Eukaryota,37RH7@33090|Viridiplantae,3GCW8@35493|Streptophyta,3I0SM@3699|Brassicales	35493|Streptophyta	C	PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin	psaA	-	-	ko:K02689	ko00195,ko01100,map00195,map01100	M00163	-	-	ko00000,ko00001,ko00002,ko00194	-	-	-	PsaA_PsaB
k59_1122_1	3694.POPTR_0015s07060.1	5.3e-62	214.0	COG2801@1|root,KOG0017@2759|Eukaryota,37RRH@33090|Viridiplantae,3G8MV@35493|Streptophyta,4JM10@91835|fabids	35493|Streptophyta	H	transposition, RNA-mediated	-	-	-	-	-	-	-	-	-	-	-	-	Asp_protease_2,Chromo,RVT_1,Retrotrans_gag,gag-asp_proteas,rve
k59_2571_1	697329.Rumal_1916	1.72e-92	282.0	COG3328@1|root,COG3328@2|Bacteria,1TP4C@1239|Firmicutes,248UI@186801|Clostridia,3WIAE@541000|Ruminococcaceae	186801|Clostridia	L	PFAM Transposase, Mutator	-	-	-	ko:K07493	-	-	-	-	ko00000	-	-	-	Transposase_mut
k59_11101_1	4081.Solyc01g007640.2.1	0.0	3698.0	2CMQD@1|root,2QRDV@2759|Eukaryota,37QIN@33090|Viridiplantae,3GEA1@35493|Streptophyta,44PKI@71274|asterids	35493|Streptophyta	C	Plant protein of unknown function (DUF825)	-	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009509,GO:0009532,GO:0009536,GO:0009570,GO:0009575,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464	-	-	-	-	-	-	-	-	-	-	AAA,DUF825
k59_6842_1	981085.XP_010100013.1	6.35e-79	238.0	COG0052@1|root,KOG0832@2759|Eukaryota,37S1B@33090|Viridiplantae,3GHIA@35493|Streptophyta,4JRV9@91835|fabids	35493|Streptophyta	J	30S ribosomal protein S2	rps2	GO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0031974,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02967	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S2
k59_6842_2	4155.Migut.D01337.1.p	4.18e-48	157.0	COG0356@1|root,KOG4665@2759|Eukaryota,37MBD@33090|Viridiplantae,3GH9B@35493|Streptophyta,44TB7@71274|asterids	35493|Streptophyta	C	ATP synthase A chain	atpI	GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009544,GO:0009579,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031976,GO:0031984,GO:0032991,GO:0033177,GO:0034220,GO:0034357,GO:0042623,GO:0042625,GO:0042626,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046933,GO:0051179,GO:0051234,GO:0055035,GO:0055085,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098807,GO:0099131,GO:0099132,GO:1902600	-	ko:K02108	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194,ko03110	3.A.2.1	-	-	ATP-synt_A
k59_10409_1	59689.fgenesh1_pm.C_scaffold_9000098	1.7e-73	223.0	COG1143@1|root,KOG3256@2759|Eukaryota,37YQF@33090|Viridiplantae,3GCUY@35493|Streptophyta	35493|Streptophyta	C	NDH shuttles electrons from NAD(P)H plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient	ndhI	GO:0003674,GO:0003824,GO:0003959,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0015979,GO:0016020,GO:0016491,GO:0016651,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0055114	1.6.5.3	ko:K05580	ko00190,ko01100,map00190,map01100	M00145	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer4
k59_10409_2	3702.ATCG01100.1	5.01e-65	208.0	COG1005@1|root,KOG4770@2759|Eukaryota,37RCJ@33090|Viridiplantae,3GDCI@35493|Streptophyta	35493|Streptophyta	C	NDH shuttles electrons from NAD(P)H plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient	ndhA	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0015979,GO:0015980,GO:0016020,GO:0016491,GO:0016651,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0055114,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204	1.6.5.3	ko:K05572	ko00190,ko01100,map00190,map01100	M00145	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	-	-	-	NADHdh
k59_8291_1	3702.ATCG00340.1	3.22e-120	363.0	28JJ8@1|root,2QRYE@2759|Eukaryota,37QY5@33090|Viridiplantae,3GH5Y@35493|Streptophyta,3I1XS@3699|Brassicales	35493|Streptophyta	C	PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin	psaB	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0010287,GO:0016020,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035	-	ko:K02690	ko00195,ko01100,map00195,map01100	M00163	-	-	ko00000,ko00001,ko00002,ko00194	-	-	-	PsaA_PsaB
k59_3279_3	78398.KS43_20365	2.07e-16	78.6	28RDB@1|root,2ZDSP@2|Bacteria,1RBF9@1224|Proteobacteria,1RQ0W@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Tube
k59_4016_1	588581.Cpap_4027	1.49e-06	53.9	COG0582@1|root,COG0582@2|Bacteria,1W4SG@1239|Firmicutes	1239|Firmicutes	L	Integrase	-	-	-	ko:K04763	-	-	-	-	ko00000,ko03036	-	-	-	Phage_integrase
k59_2958_1	1197719.A464_2021	1.83e-26	120.0	COG5525@1|root,COG5525@2|Bacteria,1MVS3@1224|Proteobacteria,1RRH5@1236|Gammaproteobacteria,3ZN97@590|Salmonella	1236|Gammaproteobacteria	S	Phage terminase large subunit (GpA)	-	-	-	-	-	-	-	-	-	-	-	-	Terminase_GpA
k59_7577_1	314271.RB2654_23158	4.19e-41	144.0	COG2801@1|root,COG2801@2|Bacteria,1MVXQ@1224|Proteobacteria,2U0FG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	COG2801 Transposase and inactivated derivatives	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	HTH_21,rve,rve_3
k59_7577_2	794846.AJQU01000142_gene153	1.52e-39	135.0	COG2963@1|root,COG2963@2|Bacteria,1RI5X@1224|Proteobacteria,2UBB0@28211|Alphaproteobacteria,4BHNS@82115|Rhizobiaceae	28211|Alphaproteobacteria	L	Transposase	-	-	-	ko:K07483	-	-	-	-	ko00000	-	-	-	HTH_Tnp_1
k59_1857_1	3847.GLYMA12G36106.1	1.8e-114	341.0	COG0056@1|root,KOG1353@2759|Eukaryota,37JWW@33090|Viridiplantae,3G9FP@35493|Streptophyta,4JJ93@91835|fabids	35493|Streptophyta	C	ATP synthase subunit alpha	atpA	-	3.6.3.14	ko:K02111,ko:K02132	ko00190,ko00195,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map00195,map01100,map04714,map05010,map05012,map05016	M00157,M00158	-	-	ko00000,ko00001,ko00002,ko00194,ko01000	3.A.2.1	-	-	ATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N
k59_4737_1	13735.ENSPSIP00000001959	8.43e-54	179.0	KOG1075@1|root,KOG1075@2759|Eukaryota	2759|Eukaryota	E	Ribonuclease H protein	-	-	-	-	-	-	-	-	-	-	-	-	Exo_endo_phos_2,RVT_1
k59_10097_1	56780.SYN_03249	2.06e-87	271.0	COG3464@1|root,COG3464@2|Bacteria,1N2V1@1224|Proteobacteria,42TEG@68525|delta/epsilon subdivisions,2WPXW@28221|Deltaproteobacteria	28221|Deltaproteobacteria	L	Helix-turn-helix domain of transposase family ISL3	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_ISL3,HTH_Tnp_ISL3,zf-ISL3
k59_5786_1	945713.IALB_0711	0.000459	52.4	COG0305@1|root,COG1372@1|root,COG0305@2|Bacteria,COG1372@2|Bacteria	2|Bacteria	L	intein-mediated protein splicing	dnaB	GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0032392,GO:0032508,GO:0034641,GO:0034645,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576	3.6.4.12	ko:K02314	ko03030,ko04112,map03030,map04112	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	DnaB,DnaB_C,Intein_splicing
k59_342_1	36331.EPrPI00000019689	1.47e-06	55.8	COG3914@1|root,KOG4626@2759|Eukaryota,1MCNY@121069|Pythiales	121069|Pythiales	GOT	TPR Domain containing protein. Source PGD	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_10979_1	1219035.NT2_27_00020	1.3e-06	53.1	COG3547@1|root,COG3547@2|Bacteria,1MUER@1224|Proteobacteria,2TSGZ@28211|Alphaproteobacteria,2K503@204457|Sphingomonadales	204457|Sphingomonadales	L	PFAM Transposase IS116 IS110 IS902 family, Transposase	-	-	-	-	-	-	-	-	-	-	-	-	DEDD_Tnp_IS110,Transposase_20
k59_8512_1	1279017.AQYJ01000029_gene3476	4.78e-15	77.8	COG2356@1|root,COG2356@2|Bacteria,1RI3H@1224|Proteobacteria,1S6A9@1236|Gammaproteobacteria,4681D@72275|Alteromonadaceae	1236|Gammaproteobacteria	L	Protein of unknown function (DUF1524)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1524
k59_7383_1	3880.AES69829	1.9e-164	484.0	COG0048@1|root,COG0049@1|root,COG1007@1|root,KOG1750@2759|Eukaryota,KOG3291@2759|Eukaryota,KOG4668@2759|Eukaryota,37KVW@33090|Viridiplantae,3GH1R@35493|Streptophyta,4JNJF@91835|fabids	35493|Streptophyta	C	NAD(P)H-quinone oxidoreductase subunit 2	ndhB	-	1.6.5.3	ko:K02992,ko:K05573	ko00190,ko01100,ko03010,map00190,map01100,map03010	M00145,M00178,M00179	R11945	RC00061	br01610,ko00000,ko00001,ko00002,ko01000,ko03011	-	-	-	Proton_antipo_M
k59_7383_2	4572.TRIUR3_00336-P1	3.32e-170	486.0	COG1007@1|root,KOG4668@2759|Eukaryota,37KVW@33090|Viridiplantae,3GH1R@35493|Streptophyta,3KR9M@4447|Liliopsida,3I881@38820|Poales	35493|Streptophyta	C	NDH shuttles electrons from NAD(P)H plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient	ndhB	-	1.6.5.3	ko:K05573	ko00190,ko01100,map00190,map01100	M00145	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	-	-	-	Proton_antipo_M
k59_9198_1	443143.GM18_1541	1.23e-06	59.3	COG1409@1|root,COG3204@1|root,COG1409@2|Bacteria,COG3204@2|Bacteria,1N85S@1224|Proteobacteria,42WZ6@68525|delta/epsilon subdivisions,2WT5K@28221|Deltaproteobacteria	28221|Deltaproteobacteria	M	Calcineurin-like phosphoesterase	-	-	-	-	-	-	-	-	-	-	-	-	Metallophos,Metallophos_C,PKD,Pur_ac_phosph_N
k59_8514_2	3847.GLYMA13G11980.1	2.81e-76	256.0	2CUMQ@1|root,2RN4M@2759|Eukaryota,37U2D@33090|Viridiplantae,3GX5D@35493|Streptophyta,4JTXP@91835|fabids	35493|Streptophyta	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_8866_1	864069.MicloDRAFT_00051360	2.2e-56	180.0	COG2963@1|root,COG2963@2|Bacteria,1RHKX@1224|Proteobacteria,2U9TV@28211|Alphaproteobacteria,1JVFR@119045|Methylobacteriaceae	28211|Alphaproteobacteria	L	Transposase	-	-	-	ko:K07483	-	-	-	-	ko00000	-	-	-	HTH_Tnp_1
k59_8866_2	1123360.thalar_02506	1.47e-177	499.0	COG2801@1|root,COG2963@1|root,COG2801@2|Bacteria,COG2963@2|Bacteria,1PBHA@1224|Proteobacteria,2TRQF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	COG2801 Transposase and inactivated derivatives	-	-	-	-	-	-	-	-	-	-	-	-	HTH_32,rve
k59_3194_2	1000565.METUNv1_01702	1.43e-19	95.1	COG3756@1|root,COG3756@2|Bacteria,1N7P7@1224|Proteobacteria,2VTUI@28216|Betaproteobacteria,2KWQK@206389|Rhodocyclales	206389|Rhodocyclales	S	Protein of unknown function (DUF1376)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1376
k59_10622_1	118161.KB235922_gene3432	6.57e-96	282.0	COG3385@1|root,COG3385@2|Bacteria	2|Bacteria	L	transposase activity	-	-	-	-	-	-	-	-	-	-	-	-	DDE_5,DDE_Tnp_1
k59_959_1	999611.KI421504_gene2264	9.77e-11	66.6	2E74C@1|root,331NT@2|Bacteria,1N6SD@1224|Proteobacteria,2UHJE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	COG0500 SAM-dependent methyltransferases	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
k59_5963_1	645127.ckrop_1633	1.46e-09	64.3	COG3645@1|root,COG3645@2|Bacteria,2IM6B@201174|Actinobacteria,22NVC@1653|Corynebacteriaceae	201174|Actinobacteria	S	P22_AR N-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	P22_AR_N
k59_5963_2	658172.CKC_05945	2.14e-31	124.0	COG3617@1|root,COG3617@2|Bacteria,1N3Q1@1224|Proteobacteria	1224|Proteobacteria	K	COG3617 Prophage antirepressor	-	-	-	-	-	-	-	-	-	-	-	-	Bro-N
k59_5963_3	1123263.AUKY01000076_gene1778	3.18e-06	55.5	COG3561@1|root,COG3645@1|root,COG3561@2|Bacteria,COG3645@2|Bacteria,1UY80@1239|Firmicutes	1239|Firmicutes	K	Phage antirepressor protein	-	-	-	ko:K07741	-	-	-	-	ko00000	-	-	-	ANT,AntA,ORF6C
k59_11332_3	404589.Anae109_3980	4.21e-20	90.5	COG0582@1|root,COG0582@2|Bacteria,1MWBN@1224|Proteobacteria,42Q95@68525|delta/epsilon subdivisions,2WKM2@28221|Deltaproteobacteria	28221|Deltaproteobacteria	L	Belongs to the 'phage' integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Phage_int_SAM_5,Phage_integrase
k59_3538_1	744980.TRICHSKD4_1117	4.23e-21	85.1	28X21@1|root,2ZJ0N@2|Bacteria,1P9K6@1224|Proteobacteria,2UVXP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_3906_1	1211112.ALJC01000006_gene83	0.000575	50.4	COG4386@1|root,COG4386@2|Bacteria,1MXZD@1224|Proteobacteria,1RN4Q@1236|Gammaproteobacteria	1236|Gammaproteobacteria	N	Tail sheath protein	-	-	-	-	-	-	-	-	-	-	-	-	Phage_sheath_1,Phage_sheath_1C
k59_5966_1	28115.HR11_01375	5.25e-30	114.0	COG1704@1|root,COG1704@2|Bacteria,4NMD3@976|Bacteroidetes,2FNPV@200643|Bacteroidia,22XSI@171551|Porphyromonadaceae	976|Bacteroidetes	S	LemA family	lemA	-	-	ko:K03744	-	-	-	-	ko00000	-	-	-	LemA
k59_9583_1	3880.AES69823	1.88e-163	496.0	28JJ8@1|root,2QRYE@2759|Eukaryota,37QY5@33090|Viridiplantae,3GX5Y@35493|Streptophyta,4JTQ6@91835|fabids	35493|Streptophyta	C	Photosystem I P700 chlorophyll a apoprotein	psaB	-	-	ko:K02690	ko00195,ko01100,map00195,map01100	M00163	-	-	ko00000,ko00001,ko00002,ko00194	-	-	-	PsaA_PsaB
k59_5689_1	1191523.MROS_0538	4.35e-31	112.0	COG2963@1|root,COG2963@2|Bacteria	2|Bacteria	L	transposase activity	-	-	-	ko:K07483	-	-	-	-	ko00000	-	-	-	HTH_Tnp_1
k59_5689_2	261292.Nit79A3_2501	7.72e-80	249.0	COG2801@1|root,COG2801@2|Bacteria,1MVXQ@1224|Proteobacteria,2VHC7@28216|Betaproteobacteria,374M1@32003|Nitrosomonadales	28216|Betaproteobacteria	L	PFAM Integrase, catalytic core	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	HTH_21,rve
k59_11342_1	3649.evm.model.supercontig_0.196	1.79e-78	234.0	COG0096@1|root,KOG1754@2759|Eukaryota,37UMN@33090|Viridiplantae,3GIWP@35493|Streptophyta,3I0AU@3699|Brassicales	35493|Streptophyta	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit	rps8	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0015935,GO:0016020,GO:0022626,GO:0022627,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02994	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L14,Ribosomal_L16,Ribosomal_S8
k59_8900_1	96561.Dole_3250	2.07e-57	192.0	COG3039@1|root,COG3039@2|Bacteria,1QQ9Q@1224|Proteobacteria,42S7X@68525|delta/epsilon subdivisions,2WNJ2@28221|Deltaproteobacteria,2MJG4@213118|Desulfobacterales	28221|Deltaproteobacteria	L	PFAM transposase IS4 family protein	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DUF772
k59_3555_1	404589.Anae109_3980	2.47e-43	156.0	COG0582@1|root,COG0582@2|Bacteria,1MWBN@1224|Proteobacteria,42Q95@68525|delta/epsilon subdivisions,2WKM2@28221|Deltaproteobacteria	28221|Deltaproteobacteria	L	Belongs to the 'phage' integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Phage_int_SAM_5,Phage_integrase
k59_6996_1	4155.Migut.D01391.1.p	7.68e-90	263.0	2A03K@1|root,2RXXN@2759|Eukaryota,37U9Z@33090|Viridiplantae,3GIHS@35493|Streptophyta,44N0K@71274|asterids	35493|Streptophyta	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_10274_4	991905.SL003B_3973	4.5e-58	216.0	COG5283@1|root,COG5283@2|Bacteria,1NFKU@1224|Proteobacteria,2U36H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	D	tail tape measure protein	-	-	-	-	-	-	-	-	-	-	-	-	PhageMin_Tail
k59_10274_6	756280.S0A145_9CAUD	5.45e-32	117.0	4QFDE@10239|Viruses,4QY4P@35237|dsDNA viruses  no RNA stage,4QRGG@28883|Caudovirales,4QJUH@10662|Myoviridae	10662|Myoviridae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_10274_7	908819.A0A0A0YUX9_9CAUD	1.16e-164	483.0	4QAZ6@10239|Viruses,4QUU8@35237|dsDNA viruses  no RNA stage,4QPHV@28883|Caudovirales,4QI4H@10662|Myoviridae	10662|Myoviridae	S	Phage tail sheath protein	-	GO:0005575,GO:0019012,GO:0044423,GO:0098015,GO:0098027	-	-	-	-	-	-	-	-	-	-	-
k59_9610_1	3702.ATCG00170.1	3.7e-54	192.0	COG0086@1|root,2QPYA@2759|Eukaryota,37HSD@33090|Viridiplantae,3GDVE@35493|Streptophyta,3I12Y@3699|Brassicales	35493|Streptophyta	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	rpoC2	GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009295,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0030880,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0061695,GO:1902494,GO:1990234	2.7.7.6	ko:K03046	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5
k59_8156_1	391626.OAN307_c03800	7.33e-187	530.0	COG2826@1|root,COG2826@2|Bacteria,1PP49@1224|Proteobacteria,2TRVA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	COG2826 Transposase and inactivated derivatives, IS30 family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_38,rve
k59_7434_1	1344012.ATMI01000056_gene1743	6.95e-52	194.0	28I8X@1|root,2Z8BQ@2|Bacteria,1MW9X@1224|Proteobacteria,1RR0M@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_11262_1	330779.Saci_1011	1.36e-09	62.0	COG0463@1|root,arCOG00895@2157|Archaea,2XSPD@28889|Crenarchaeota	28889|Crenarchaeota	M	PFAM Glycosyl transferase family 2	-	-	2.4.1.83	ko:K00721	ko00510,ko01100,map00510,map01100	-	R01009	RC00005	ko00000,ko00001,ko01000,ko01003	-	GT2	-	Glycos_transf_2
k59_4883_2	556268.OFAG_00844	2.26e-28	114.0	COG4422@1|root,COG4422@2|Bacteria,1MXQI@1224|Proteobacteria,2VJP8@28216|Betaproteobacteria,477M2@75682|Oxalobacteraceae	28216|Betaproteobacteria	S	Protein of unknown function (DUF5131)	-	-	-	-	-	-	-	-	-	-	-	-	DUF5131
k59_4527_1	178901.AmDm5_3101	1.23e-142	428.0	2DBT2@1|root,2ZAV4@2|Bacteria,1P9UY@1224|Proteobacteria	1224|Proteobacteria	S	Reverse transcriptase (RNA-dependent DNA polymerase)	-	-	-	-	-	-	-	-	-	-	-	-	RVT_1
k59_1957_1	466088.CL42_02010	1.26e-22	103.0	28HPK@1|root,2Z7XJ@2|Bacteria,1NBHR@1224|Proteobacteria,1RZ7H@1236|Gammaproteobacteria,3NMFD@468|Moraxellaceae	1236|Gammaproteobacteria	S	Bacteriophage head to tail connecting protein	-	-	-	-	-	-	-	-	-	-	-	-	Head-tail_con
k59_3113_1	1168034.FH5T_16520	7.62e-43	152.0	COG3547@1|root,COG3547@2|Bacteria,4NHYP@976|Bacteroidetes,2FKYS@200643|Bacteroidia	976|Bacteroidetes	L	Transposase	-	-	-	-	-	-	-	-	-	-	-	-	DEDD_Tnp_IS110,Transposase_20
k59_2317_1	1122619.KB892375_gene1986	6.15e-44	154.0	COG5421@1|root,COG5421@2|Bacteria,1R3NX@1224|Proteobacteria,2VNNI@28216|Betaproteobacteria,3T7DC@506|Alcaligenaceae	28216|Betaproteobacteria	L	Evidence 2b Function of strongly homologous gene	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1
k59_6253_1	244582.JQAK01000010_gene2473	4.72e-143	415.0	COG3344@1|root,COG3344@2|Bacteria,1MVI1@1224|Proteobacteria,2U28T@28211|Alphaproteobacteria,47F3F@766|Rickettsiales	766|Rickettsiales	L	Reverse transcriptase (RNA-dependent DNA polymerase)	-	-	-	-	-	-	-	-	-	-	-	-	GIIM,RVT_1
k59_908_1	1236973.JCM9157_799	2.6e-13	75.1	COG3023@1|root,COG3409@1|root,COG3023@2|Bacteria,COG3409@2|Bacteria,1V5SV@1239|Firmicutes,4HI8B@91061|Bacilli,1ZG3Z@1386|Bacillus	91061|Bacilli	MV	Ami_2	-	-	-	-	-	-	-	-	-	-	-	-	Amidase_2,Cu_amine_oxidN1,LysM,PG_binding_1
k59_8458_2	240015.ACP_3323	1.05e-36	138.0	28N2S@1|root,2ZB8K@2|Bacteria	2|Bacteria	S	P63C domain	-	-	-	-	-	-	-	-	-	-	-	-	P63C
k59_1962_1	941449.dsx2_1445	1.05e-75	239.0	COG3049@1|root,COG3049@2|Bacteria,1MWPQ@1224|Proteobacteria,42QQ7@68525|delta/epsilon subdivisions,2WN8Z@28221|Deltaproteobacteria,2M8UD@213115|Desulfovibrionales	28221|Deltaproteobacteria	M	Linear amide C-N hydrolases, choloylglycine hydrolase family	-	-	3.5.1.24	ko:K01442	ko00120,ko00121,ko01100,map00120,map00121,map01100	-	R02797,R03975,R03977,R04486,R04487,R05835	RC00090,RC00096	ko00000,ko00001,ko01000	-	-	-	CBAH
k59_4889_1	582744.Msip34_1668	7.74e-48	161.0	COG2214@1|root,COG2214@2|Bacteria,1N1HS@1224|Proteobacteria	1224|Proteobacteria	O	Heat shock protein dnaj	-	-	-	-	-	-	-	-	-	-	-	-	DnaJ
k59_4889_2	109871.XP_006679721.1	1.86e-12	71.6	COG4021@1|root,2S3NA@2759|Eukaryota,39QWR@33154|Opisthokonta,3Q6X0@4751|Fungi	4751|Fungi	S	tRNAHis guanylyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Thg1
k59_3839_1	50452.W0USQ7	1.2e-181	513.0	28ISP@1|root,2QR3X@2759|Eukaryota,37T53@33090|Viridiplantae,3G7SE@35493|Streptophyta,3HVWC@3699|Brassicales	35493|Streptophyta	C	One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation	psbC	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009521,GO:0009523,GO:0009532,GO:0009533,GO:0009534,GO:0009535,GO:0009536,GO:0009539,GO:0009570,GO:0009579,GO:0010287,GO:0016020,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0098796	-	ko:K02705	ko00195,ko01100,map00195,map01100	M00161	-	-	ko00000,ko00001,ko00002,ko00194	-	-	-	PSII
k59_3839_2	59689.fgenesh2_kg.2__723__ATCG00270.1	3.58e-121	352.0	2CNIT@1|root,2QWJF@2759|Eukaryota,37RZQ@33090|Viridiplantae,3GF68@35493|Streptophyta	35493|Streptophyta	C	Photosystem II (PSII) is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1 D2 (PsbA PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex	psbD	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0010287,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035	1.10.3.9	ko:K02706	ko00195,ko01100,map00195,map01100	M00161	-	-	ko00000,ko00001,ko00002,ko00194,ko01000	-	-	-	Photo_RC
k59_6257_1	3702.ATCG00180.1	3.59e-129	385.0	COG0086@1|root,2QPYA@2759|Eukaryota,37HVM@33090|Viridiplantae,3GFWY@35493|Streptophyta	35493|Streptophyta	K	DNA-directed RNA polymerase	-	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009295,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464	2.7.7.6	ko:K03046	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3
k59_5617_1	4113.PGSC0003DMT400089450	7.25e-42	144.0	2E30T@1|root,2SA69@2759|Eukaryota,37XUE@33090|Viridiplantae,3GWDE@35493|Streptophyta,44U28@71274|asterids	35493|Streptophyta	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_5617_2	981085.XP_010088962.1	3.83e-35	120.0	2CYKI@1|root,2S503@2759|Eukaryota,37VZS@33090|Viridiplantae,3GKQM@35493|Streptophyta	35493|Streptophyta	S	Protein of unknown function (DUF2647)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2647
k59_10226_1	509635.N824_27980	2.95e-75	237.0	COG3385@1|root,COG3385@2|Bacteria,4NIN4@976|Bacteroidetes,1IPK8@117747|Sphingobacteriia	976|Bacteroidetes	L	PFAM Transposase	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DUF4372
k59_5253_1	78398.KS43_19750	6.11e-40	142.0	COG3547@1|root,COG3547@2|Bacteria,1MXKJ@1224|Proteobacteria,1RSCP@1236|Gammaproteobacteria,1MTWH@122277|Pectobacterium	1236|Gammaproteobacteria	L	Transposase	Z012_08285	-	-	ko:K07486	-	-	-	-	ko00000	-	-	-	DEDD_Tnp_IS110,Transposase_20
k59_2330_1	1535287.JP74_21920	4.22e-05	51.6	COG3740@1|root,COG3740@2|Bacteria,1NHKT@1224|Proteobacteria,2U82W@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Phage prohead protease, HK97 family	-	-	-	ko:K06904	-	-	-	-	ko00000	-	-	-	Peptidase_S78
k59_9171_1	1007096.BAGW01000026_gene1540	1.68e-77	240.0	COG3328@1|root,COG3328@2|Bacteria,1TP4C@1239|Firmicutes,248UI@186801|Clostridia,2N6VE@216572|Oscillospiraceae	186801|Clostridia	L	Transposase, Mutator family	-	-	-	ko:K07493	-	-	-	-	ko00000	-	-	-	Transposase_mut
k59_10954_1	204669.Acid345_2911	1.03e-123	374.0	COG2304@1|root,COG2304@2|Bacteria,3Y6GT@57723|Acidobacteria,2JKSI@204432|Acidobacteriia	204432|Acidobacteriia	S	TROVE domain	-	-	-	-	-	-	-	-	-	-	-	-	TROVE
k59_3860_1	3880.AES77907	7.26e-26	105.0	COG1008@1|root,KOG4845@2759|Eukaryota,37QQT@33090|Viridiplantae,3G7MJ@35493|Streptophyta,4JSGR@91835|fabids	35493|Streptophyta	C	NAD(P)H-quinone oxidoreductase chain 4	ndhD	-	1.6.5.3	ko:K05575	ko00190,ko01100,map00190,map01100	M00145	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer4,Proton_antipo_M
k59_3860_2	4113.PGSC0003DMT400029490	9.32e-11	58.2	KOG4669@1|root,KOG4669@2759|Eukaryota,37V63@33090|Viridiplantae,3GJK7@35493|Streptophyta,44TJB@71274|asterids	35493|Streptophyta	C	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L	ndhE	GO:0003674,GO:0003824,GO:0003954,GO:0003959,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008137,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042180,GO:0042181,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050136,GO:0051186,GO:0051188,GO:0055035,GO:0055114,GO:0071704,GO:0098796,GO:1901576,GO:1901661,GO:1901663,GO:1902494	1.6.5.3	ko:K05576	ko00190,ko01100,map00190,map01100	M00145	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	-	-	-	Oxidored_q2
k59_10582_1	1121101.HMPREF1532_00901	2.82e-29	117.0	COG3677@1|root,COG3677@2|Bacteria,4NJC5@976|Bacteroidetes,2G2VB@200643|Bacteroidia,4AQ5E@815|Bacteroidaceae	976|Bacteroidetes	L	COG NOG14720 non supervised orthologous group	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_IS1595,Zn_Tnp_IS1595
k59_7753_5	331113.SNE_B23940	1.64e-22	94.7	COG3723@1|root,COG3723@2|Bacteria	2|Bacteria	L	DNA synthesis involved in double-strand break repair via homologous recombination	bet	-	-	ko:K07455	-	-	-	-	ko00000,ko03400	-	-	-	RecT
k59_6147_2	1434325.AZQN01000001_gene378	4.88e-17	84.3	COG0305@1|root,COG0305@2|Bacteria,4NF8P@976|Bacteroidetes,47JB5@768503|Cytophagia	976|Bacteroidetes	L	Participates in initiation and elongation during chromosome replication	dnaB	-	3.6.4.12	ko:K02314	ko03030,ko04112,map03030,map04112	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	DnaB,DnaB_C
k59_9375_1	298655.KI912266_gene2142	0.000308	47.8	COG0317@1|root,COG0317@2|Bacteria,2IHTX@201174|Actinobacteria	201174|Actinobacteria	KT	HD domain	-	-	-	-	-	-	-	-	-	-	-	-	HD_4
k59_8323_1	126957.SMAR004651-PA	1.28e-07	51.2	2DF3V@1|root,2S5RJ@2759|Eukaryota,3AARI@33154|Opisthokonta,3BTYV@33208|Metazoa,3DBCA@33213|Bilateria,421Q3@6656|Arthropoda	33208|Metazoa	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_7595_1	981085.XP_010109403.1	9.21e-36	121.0	2D40V@1|root,2STG3@2759|Eukaryota,381GS@33090|Viridiplantae,3GMA3@35493|Streptophyta,4JUQW@91835|fabids	35493|Streptophyta	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_4757_2	1396141.BATP01000047_gene3903	1.63e-05	51.6	COG0457@1|root,COG3118@1|root,COG3379@1|root,COG0457@2|Bacteria,COG3118@2|Bacteria,COG3379@2|Bacteria,46URB@74201|Verrucomicrobia,2IV4Z@203494|Verrucomicrobiae	203494|Verrucomicrobiae	O	Type I phosphodiesterase / nucleotide pyrophosphatase	-	-	-	-	-	-	-	-	-	-	-	-	Phosphodiest
k59_3694_1	1458357.BG58_11025	5.54e-12	69.7	COG2197@1|root,COG2197@2|Bacteria,1NA3X@1224|Proteobacteria,2VWX0@28216|Betaproteobacteria,1KAW7@119060|Burkholderiaceae	28216|Betaproteobacteria	KT	phage-related functions and prophages	-	-	-	-	-	-	-	-	-	-	-	-	HNH_3
k59_9024_1	391613.RTM1035_09833	7.85e-109	337.0	COG3547@1|root,COG3547@2|Bacteria,1MUKH@1224|Proteobacteria,2TRPW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	transposase IS116 IS110 IS902 family	-	-	-	-	-	-	-	-	-	-	-	-	DEDD_Tnp_IS110,Transposase_20
k59_5805_1	1115515.EV102420_06_00080	3.45e-15	79.3	COG3723@1|root,COG3723@2|Bacteria,1R6DB@1224|Proteobacteria,1RZZ3@1236|Gammaproteobacteria,3XN6G@561|Escherichia	1236|Gammaproteobacteria	L	Binds to single-stranded DNA and also promotes the renaturation of complementary single-stranded DNA. Function in recombination. Has a function	recT	GO:0000724,GO:0000725,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005575,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0018130,GO:0019438,GO:0032392,GO:0032508,GO:0032991,GO:0032993,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043150,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901576	-	ko:K07455	-	-	-	-	ko00000,ko03400	-	-	-	RecT
k59_1876_1	163908.KB235896_gene879	7.99e-29	117.0	COG0582@1|root,COG0582@2|Bacteria,1G5KE@1117|Cyanobacteria	1117|Cyanobacteria	L	viral genome integration into host DNA	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_2227_1	1237149.C900_01709	1.81e-151	439.0	COG5433@1|root,COG5433@2|Bacteria,4NHJC@976|Bacteroidetes,47X71@768503|Cytophagia	976|Bacteroidetes	L	DDE_Tnp_1-associated	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DDE_Tnp_1_assoc
k59_2227_2	1236514.BAKL01000017_gene1818	1.86e-11	63.5	COG3507@1|root,COG3589@1|root,COG3507@2|Bacteria,COG3589@2|Bacteria,4NE7B@976|Bacteroidetes,2FM4U@200643|Bacteroidia,4AMZV@815|Bacteroidaceae	976|Bacteroidetes	G	COG NOG26813 non supervised orthologous group	-	-	-	-	-	-	-	-	-	-	-	-	GH97_C,GH97_N,Glyco_hydro_97
k59_8698_4	537007.BLAHAN_04055	0.000272	46.2	COG1476@1|root,COG1476@2|Bacteria,1VS87@1239|Firmicutes,25EFI@186801|Clostridia	186801|Clostridia	K	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_19,HTH_3
k59_9392_1	1112217.PPL19_19897	1.17e-22	102.0	COG4643@1|root,COG5545@1|root,COG4643@2|Bacteria,COG5545@2|Bacteria,1MVGK@1224|Proteobacteria,1SAWT@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	Virulence-associated protein E	-	-	-	ko:K06919	-	-	-	-	ko00000	-	-	-	VirE
k59_10842_1	159749.K0RZE7	2.01e-09	53.9	2D0S2@1|root,2SF6P@2759|Eukaryota	2759|Eukaryota	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_9771_2	411154.GFO_2469	2.02e-67	213.0	COG0863@1|root,COG0863@2|Bacteria,4NQQ1@976|Bacteroidetes,1I957@117743|Flavobacteriia	976|Bacteroidetes	L	DNA methylase	-	-	2.1.1.72	ko:K00571	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	N6_N4_Mtase
k59_9395_1	498761.HM1_3149	5.48e-12	63.2	2DMNG@1|root,32SP1@2|Bacteria,1VAXC@1239|Firmicutes,24P9Q@186801|Clostridia	186801|Clostridia	S	COG NOG14552 non supervised orthologous group	-	-	-	-	-	-	-	-	-	-	-	-	-
k59_7615_1	485915.Dret_2002	1.08e-189	538.0	COG3464@1|root,COG3464@2|Bacteria,1R4DH@1224|Proteobacteria,43AQ4@68525|delta/epsilon subdivisions,2X63W@28221|Deltaproteobacteria,2MGXP@213115|Desulfovibrionales	28221|Deltaproteobacteria	L	PFAM transposase IS204 IS1001 IS1096 IS1165 family protein	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_ISL3,zf-ISL3
k59_1180_1	111780.Sta7437_1074	2.64e-35	138.0	COG1474@1|root,COG3772@1|root,COG1474@2|Bacteria,COG3772@2|Bacteria,1G7YF@1117|Cyanobacteria,3VKH0@52604|Pleurocapsales	1117|Cyanobacteria	LO	Phage lysozyme	-	-	3.2.1.17	ko:K01185	-	-	-	-	ko00000,ko01000	-	-	-	LysM,Phage_lysozyme
k59_10853_2	1192759.AKIB01000023_gene2837	2.56e-20	87.8	2EBAW@1|root,335BJ@2|Bacteria,1N90V@1224|Proteobacteria,2UIYS@28211|Alphaproteobacteria,2K4JF@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF5051
k59_8366_1	1123242.JH636437_gene6155	6.36e-10	59.7	COG3293@1|root,COG3293@2|Bacteria	2|Bacteria	L	Transposase	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DUF4096
k59_10860_1	4572.TRIUR3_00337-P1	6.14e-103	298.0	COG0049@1|root,KOG3291@2759|Eukaryota,37YX8@33090|Viridiplantae,3GNS6@35493|Streptophyta,3KTYP@4447|Liliopsida,3IAPX@38820|Poales	35493|Streptophyta	J	ribosomal protein S7	-	-	-	-	-	-	-	-	-	-	-	-	Ribosomal_S7
k59_6204_1	246200.SPO0479	1.1e-53	180.0	COG3676@1|root,COG3677@1|root,COG3676@2|Bacteria,COG3677@2|Bacteria,1MXYX@1224|Proteobacteria,2TQR3@28211|Alphaproteobacteria,4NDP6@97050|Ruegeria	28211|Alphaproteobacteria	L	ISXO2-like transposase domain	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_IS1595,Zn_Tnp_IS1595
k59_5845_1	1499680.CCFE01000016_gene1051	8.99e-42	151.0	COG3464@1|root,COG3464@2|Bacteria,1UKR8@1239|Firmicutes,4HT0F@91061|Bacilli,1ZFDK@1386|Bacillus	91061|Bacilli	L	High confidence in function and specificity	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_ISL3,HTH_Tnp_ISL3,zf-ISL3
k59_1908_1	1340434.AXVA01000005_gene4820	2.66e-06	49.3	COG1396@1|root,COG1396@2|Bacteria,1VK84@1239|Firmicutes	1239|Firmicutes	K	Transcriptional	-	-	-	-	-	-	-	-	-	-	-	-	HTH_19,HTH_3
k59_3053_1	1261131.lam_166	4.89e-36	127.0	COG3677@1|root,COG3677@2|Bacteria,1MXYX@1224|Proteobacteria,2TQR3@28211|Alphaproteobacteria,4BFF2@82115|Rhizobiaceae	28211|Alphaproteobacteria	L	ISXO2-like transposase domain	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_IS1595,Zn_Tnp_IS1595
k59_9069_1	330214.NIDE1834	4.04e-58	192.0	COG3547@1|root,COG3547@2|Bacteria,3J17W@40117|Nitrospirae	40117|Nitrospirae	L	hmm pf02371	-	-	-	ko:K07486	-	-	-	-	ko00000	-	-	-	DEDD_Tnp_IS110,Transposase_20
## 165 queries scanned
## Total time (seconds): 71.42252230644226
## Rate: 2.31 q/s