name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Clostridium sp. MB40-C1	3070996	S	488	47	535	0.00939
Clostridium sp. OS1-26	3070681	S	296	36	332	0.00583
Clostridium sp. DL-VIII	641107	S	156	19	175	0.00307
Clostridium sp. BJN0001	2930219	S	141	34	175	0.00307
Clostridium sp. MD294	97138	S	124	12	136	0.00239
Clostridium sp. JN-9	2507159	S	106	12	118	0.00207
Clostridium sp. JN-1	2483110	S	103	9	112	0.00197
Clostridium sp. 'deep sea'	2779445	S	96	0	96	0.00168
Clostridium sp. JS66	3064705	S	90	31	121	0.00212
Clostridium sp. 001	1970093	S	82	75	157	0.00276
Clostridium sp. AWRP	2212991	S	78	50	128	0.00225
Clostridium sp. C1	1155388	S	60	124	184	0.00323
Clostridium botulinum	1491	S	1104	1616	2720	0.04773
Clostridium perfringens	1502	S	544	1269	1813	0.03182
Clostridium estertheticum	238834	S	509	74	583	0.01023
Clostridium tetani	1513	S	410	202	612	0.01074
Clostridium baratii	1561	S	407	66	473	0.00830
Clostridium intestinale	36845	S	402	59	461	0.00809
Clostridium pasteurianum	1501	S	356	25	381	0.00669
Clostridium taeniosporum	394958	S	346	41	387	0.00679
Clostridium tagluense	360422	S	305	50	355	0.00623
Clostridium argentinense	29341	S	296	30	326	0.00572
Clostridium saccharoperbutylacetonicum	36745	S	282	31	313	0.00549
Clostridium cochlearium	1494	S	271	92	363	0.00637
Clostridium felsineum	36839	S	265	25	290	0.00509
Clostridium beijerinckii	1520	S	250	381	631	0.01107
Clostridium manihotivorum	2320868	S	250	22	272	0.00477
Clostridium cadaveris	1529	S	235	107	342	0.00600
Clostridium novyi	1542	S	231	38	269	0.00472
Clostridium septicum	1504	S	230	43	273	0.00479
Clostridium kluyveri	1534	S	230	12	242	0.00425
Clostridium gasigenes	94869	S	224	29	253	0.00444
Clostridium saccharobutylicum	169679	S	216	28	244	0.00428
Clostridium butyricum	1492	S	193	446	639	0.01121
Clostridium bornimense	1216932	S	180	113	293	0.00514
Clostridium acetobutylicum	1488	S	169	6	175	0.00307
Clostridium chauvoei	46867	S	160	28	188	0.00330
Clostridium tyrobutyricum	1519	S	156	10	166	0.00291
Clostridium aceticum	84022	S	145	15	160	0.00281
Clostridium fermenticellae	2068654	S	141	9	150	0.00263
Clostridium gelidum	704125	S	127	10	137	0.00240
Clostridium cellulovorans	1493	S	123	15	138	0.00242
Clostridium formicaceticum	1497	S	118	23	141	0.00247
Clostridium scatologenes	1548	S	117	89	206	0.00362
Clostridium sporogenes	1509	S	94	174	268	0.00470
Clostridium isatidis	182773	S	78	39	117	0.00205
Clostridium carboxidivorans	217159	S	61	23	84	0.00147
Clostridium thermarum	1716543	S	59	42	101	0.00177
Clostridium drakei	332101	S	51	29	80	0.00140
Crassaminicella thermophila	2599308	S	411	139	550	0.00965
Crassaminicella profunda	1286698	S	400	82	482	0.00846
Crassaminicella indica	2855394	S	375	164	539	0.00946
Caloramator sp. mosi_1	3023090	S	190	46	236	0.00414
Caloramator sp. E03	2576307	S	80	6	86	0.00151
Caloramator sp. Dgby_cultured_2	3029174	S	66	56	122	0.00214
Oceanirhabdus sp. W0125-5	2999116	S	305	21	326	0.00572
Hathewaya histolytica	1498	S	117	18	135	0.00237
Candidatus Arthromitus sp. SFB-rat-Yit	1041504	S	34	32	66	0.00116
Sarcina sp. JB2	2726954	S	40	10	50	0.00088
Proteiniclasticum sp. QWL-01	3036945	S	37	11	48	0.00084
Acetivibrio saccincola	1677857	S	62	54	116	0.00204
Acetivibrio thermocellus	1515	S	49	14	63	0.00111
Ruminiclostridium herbifermentans	2488810	S	49	41	90	0.00158
Petroclostridium sp. X23	3045146	S	61	9	70	0.00123
Proteiniborus sp. MB09-C3	3050072	S	176	34	210	0.00369
Fenollaria massiliensis	938288	S	52	50	102	0.00179
Alkalicella caledoniensis	2731377	S	32	3	35	0.00061
Candidatus Syntrophocurvum alkaliphilum	2293317	S	66	2	68	0.00119
Desulfotomaculum nigrificans	1565	S	47	39	86	0.00151
Tepidibacter hydrothermalis	3036126	S	1346	447	1793	0.03147
Tepidibacter aestuarii	2925782	S	1332	543	1875	0.03291
Romboutsia sp. CE17	2724150	S	560	402	962	0.01688
Romboutsia sp. 13368	2708053	S	536	471	1007	0.01767
Romboutsia hominis	1507512	S	468	236	704	0.01235
Romboutsia ilealis	1115758	S	340	259	599	0.01051
Paraclostridium sordellii	1505	S	841	349	1190	0.02088
Paraclostridium bifermentans	1490	S	753	288	1041	0.01827
Clostridioides difficile	1496	S	1566	3226	4792	0.08410
Terrisporobacter petrolearius	1460447	S	256	417	673	0.01181
Terrisporobacter mayombei	1541	S	210	111	321	0.00563
Terrisporobacter glycolicus	36841	S	188	116	304	0.00534
Intestinibacter bartlettii	261299	S	771	622	1393	0.02445
Peptacetobacter hiranonis	89152	S	448	257	705	0.01237
Peptostreptococcus equinus	3003601	S	301	64	365	0.00641
Alkaliphilus sp. B6464	2731219	S	393	105	498	0.00874
Alkaliphilus oremlandii	461876	S	196	52	248	0.00435
Alkaliphilus metalliredigens	208226	S	93	66	159	0.00279
Serpentinicella alkaliphila	1734049	S	174	83	257	0.00451
Caminicella sporogenes	166485	S	594	187	781	0.01371
Acetoanaerobium sticklandii	1511	S	389	49	438	0.00769
Peptoclostridium acidaminophilum	1731	S	414	144	558	0.00979
Aminipila terrae	2697030	S	73	6	79	0.00139
Geosporobacter ferrireducens	1424294	S	76	22	98	0.00172
Anaeromicropila herbilytica	2785025	S	110	9	119	0.00209
Anaerocolumna chitinilytica	1727145	S	47	1	48	0.00084
[Clostridium] colinum	36835	S	76	6	82	0.00144
Lachnoanaerobaculum umeaense	617123	S	51	24	75	0.00132
Roseburia sp. 499	1261634	S	44	17	61	0.00107
Anaerobutyricum hallii	39488	S	43	58	101	0.00177
Dorea longicatena	88431	S	39	80	119	0.00209
Candidatus Epulonipiscium viviparus	420336	S	39	2	41	0.00072
Anaerostipes hadrus	649756	S	37	47	84	0.00147
Lacrimispora xylanisolvens	384636	S	35	2	37	0.00065
Vallitalea guaymasensis	1185412	S	116	5	121	0.00212
Petrocella atlantisensis	2173034	S	52	10	62	0.00109
Defluviitalea saccharophila	879970	S	131	153	284	0.00498
Anaerotignum propionicum	28446	S	35	9	44	0.00077
Helicovermis profundi	3065157	S	679	58	737	0.01293
Aceticella autotrophica	2755338	S	42	11	53	0.00093
Halanaerobium praevalens	2331	S	96	36	132	0.00232
Halobacteroides halobius	42422	S	43	0	43	0.00075
Natranaerobius thermophilus	375929	S	46	1	47	0.00082
Natranaerofaba carboxydovora	2742683	S	43	0	43	0.00075
Koleobacter methoxysyntrophicus	2751313	S	66	6	72	0.00126
Zhaonella formicivorans	2528593	S	44	6	50	0.00088
Bacillus mycoides	1405	S	71	195	266	0.00467
Bacillus cytotoxicus	580165	S	67	54	121	0.00212
Bacillus cereus	1396	S	63	824	887	0.01557
Bacillus nitratireducens	2026193	S	39	58	97	0.00170
Bacillus sp. Y1	352858	S	41	32	73	0.00128
Bacillus carboniphilus	86663	S	47	16	63	0.00111
Lysinibacillus telephonicus	1714840	S	68	82	150	0.00263
Neobacillus sp. PS3-34	3070678	S	45	27	72	0.00126
Peribacillus frigoritolerans	450367	S	42	116	158	0.00277
Peribacillus asahii	228899	S	37	42	79	0.00139
Oceanobacillus jeddahense	1462527	S	33	21	54	0.00095
Priestia megaterium	1404	S	64	178	242	0.00425
Psychrobacillus sp. FSL H8-0483	2921389	S	41	56	97	0.00170
Cytobacillus dafuensis	1742359	S	61	61	122	0.00214
Fervidibacillus halotolerans	2980027	S	33	21	54	0.00095
Staphylococcus haemolyticus	1283	S	63	85	148	0.00260
Staphylococcus lutrae	155085	S	52	25	77	0.00135
Staphylococcus aureus	1280	S	50	824	874	0.01534
Staphylococcus epidermidis	1282	S	45	71	116	0.00204
Staphylococcus warneri	1292	S	45	82	127	0.00223
Staphylococcus capitis	29388	S	39	69	108	0.00190
Staphylococcus lloydii	2781774	S	33	20	53	0.00093
Mammaliicoccus sciuri	1296	S	78	63	141	0.00247
Viridibacillus sp. JNUCC-6	2779527	S	45	18	63	0.00111
Gemella sp. zg-570	2840371	S	36	10	46	0.00081
Gemella sanguinis	84135	S	36	33	69	0.00121
Ligilactobacillus salivarius	1624	S	37	39	76	0.00133
Liquorilactobacillus nagelii	82688	S	33	31	64	0.00112
Apilactobacillus apisilvae	2923364	S	36	8	44	0.00077
Streptococcus pyogenes	1314	S	40	142	182	0.00319
Streptococcus porcinus	1340	S	32	36	68	0.00119
Lactococcus lactis	1358	S	48	216	264	0.00463
Miniphocaeibacter halophilus	2931922	S	94	5	99	0.00174
Parvimonas micra	33033	S	84	194	278	0.00488
Helcococcus ovis	72026	S	32	28	60	0.00105
Finegoldia magna	1260	S	38	81	119	0.00209
Tissierella sp. MB52-C2	3070999	S	158	16	174	0.00305
Tissierella sp. Yu-01	3035694	S	113	20	133	0.00233
Gottschalkia acidurici	1556	S	263	38	301	0.00528
Schnuerera ultunensis	45497	S	152	23	175	0.00307
Keratinibaculum paraultunense	1278232	S	74	32	106	0.00186
Caloranaerobacter azorensis	116090	S	194	45	239	0.00419
Acidilutibacter cellobiosedens	2507161	S	97	43	140	0.00246
Sedimentibacter sp. zth1	2816908	S	278	20	298	0.00523
Sedimentibacter sp. MB31-C6	3109366	S	97	11	108	0.00190
Sedimentibacter sp. MB35-C1	3070995	S	49	4	53	0.00093
Turicibacter sp. TJ11	2806443	S	53	53	106	0.00186
Megamonas funiformis	437897	S	43	6	49	0.00086
Megamonas hypermegale	158847	S	42	10	52	0.00091
Pelosinus fermentans	365349	S	37	2	39	0.00068
endosymbiont 'TC1' of Trimyema compressum	243899	S	58	2	60	0.00105
Spiroplasma endosymbiont of Atherix ibis	3066291	S	37	122	159	0.00279
Spiroplasma endosymbiont of Labia minor	3066305	S	34	4	38	0.00067
Mycoplasma mycoides	2102	S	33	21	54	0.00095
Mesomycoplasma hyorhinis	2100	S	38	8	46	0.00081
Hujiaoplasma nucleasis	2725268	S	44	3	47	0.00082
Prochlorococcus marinus	1219	S	41	12	53	0.00093
Flavobacterium cerinum	2502784	S	49	184	233	0.00409
Polaribacter gangjinensis	574710	S	46	48	94	0.00165
Polaribacter reichenbachii	996801	S	45	31	76	0.00133
Aquimarina sp. ERC-38	2949996	S	41	5	46	0.00081
Zunongwangia sp. SCSIO 43204	2779359	S	45	126	171	0.00300
Blattabacterium cuenoti	1653831	S	88	69	157	0.00276
uncultured Bacteroides sp.	162156	S	40	34	74	0.00130
Marinifilum fragile	570161	S	33	12	45	0.00079
uncultured Draconibacterium sp.	1573823	S	34	6	40	0.00070
Aureibacter tunicatorum	866807	S	39	1	40	0.00070
Buchnera aphidicola	9	S	214	59	273	0.00479
Proteus mirabilis	584	S	36	200	236	0.00414
Beggiatoa leptomitoformis	288004	S	32	3	35	0.00061
Cupriavidus taiwanensis	164546	S	113	85	198	0.00347
Fusobacterium varium	856	S	118	172	290	0.00509
Fusobacterium polymorphum	76857	S	117	87	204	0.00358
Fusobacterium hwasookii	1583098	S	108	91	199	0.00349
Fusobacterium hominis	2764326	S	93	125	218	0.00383
Fusobacterium nucleatum	851	S	91	110	201	0.00353
Fusobacterium pseudoperiodonticum	2663009	S	87	34	121	0.00212
Fusobacterium mortiferum	850	S	57	3	60	0.00105
Fusobacterium ulcerans	861	S	35	27	62	0.00109
Fusobacterium animalis	76859	S	32	74	106	0.00186
uncultured Ilyobacter sp.	544433	S	67	11	78	0.00137
Ilyobacter polytropus	167642	S	64	17	81	0.00142
Cetobacterium somerae	188913	S	145	24	169	0.00297
Leptotrichia sp. oral taxon 221	712362	S	116	97	213	0.00374
Leptotrichia sp. oral taxon 212	712357	S	36	16	52	0.00091
Streptobacillus moniliformis	34105	S	35	22	57	0.00100
Haliovirga abyssi	2996794	S	74	2	76	0.00133
Arcobacter acticola	1849015	S	54	25	79	0.00139
Arcobacter roscoffensis	2961520	S	51	17	68	0.00119
Arcobacter nitrofigilis	28199	S	38	7	45	0.00079
Arcobacter suis	1278212	S	34	35	69	0.00121
Halarcobacter sp.	2321133	S	90	14	104	0.00183
Halarcobacter bivalviorum	663364	S	40	7	47	0.00082
Malaciobacter molluscorum	1032072	S	32	55	87	0.00153
Aliarcobacter butzleri	28197	S	41	48	89	0.00156
Campylobacter sputorum	206	S	39	34	73	0.00128
Helicobacter pylori	210	S	39	17	56	0.00098
Caminibacter mediatlanticus	291048	S	35	6	41	0.00072
Brachyspira intermedia	84377	S	36	6	42	0.00074
Tepiditoga spiralis	2108365	S	83	4	87	0.00153
Oceanotoga sp. DSM 15011	2984951	S	61	4	65	0.00114
Thermodesulfobacterium geofontis	1295609	S	36	8	44	0.00077
Deferribacter desulfuricans	197162	S	45	2	47	0.00082
Methanobrevibacter millerae	230361	S	154	39	193	0.00339