name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Vibrio sp. JC009	2912314	S	1085	88	1173	0.00868
Vibrio sp. SCSIO 43137	3021011	S	929	68	997	0.00738
Vibrio sp. B1FLJ16	2751178	S	717	162	879	0.00650
Vibrio sp. YMD68	3042300	S	654	259	913	0.00676
Vibrio sp. ABG19	2817385	S	564	977	1541	0.01140
Vibrio sp. SCSIO 43136	2819101	S	443	39	482	0.00357
Vibrio sp. SS-MA-C1-2	2908646	S	424	44	468	0.00346
Vibrio sp. CB1-14	3016528	S	417	112	529	0.00391
Vibrio sp. SCSIO 43135	2819096	S	412	44	456	0.00337
Vibrio sp. gvc	2993714	S	366	574	940	0.00696
Vibrio sp. VB16	2785746	S	363	157	520	0.00385
Vibrio sp. DW001	2912315	S	328	140	468	0.00346
Vibrio sp. 16	391586	S	282	37	319	0.00236
Vibrio sp. HDW18	2714948	S	251	357	608	0.00450
Vibrio sp. B1ASS3	2751176	S	247	442	689	0.00510
Vibrio sp. THAF190c	2587865	S	188	40	228	0.00169
Vibrio sp. SCSIO 43132	2779363	S	141	134	275	0.00203
Vibrio sp. ED004	2785124	S	88	91	179	0.00132
Vibrio sp. EJY3	1116375	S	86	346	432	0.00320
Vibrio sp. SNU_ST1	3064001	S	78	51	129	0.00095
Vibrio sp. B1REV9	2751179	S	75	74	149	0.00110
Vibrio sp. SCSIO 43140	2819100	S	72	26	98	0.00073
Vibrio sp. J383	2942997	S	71	116	187	0.00138
Vibrio sp. Scap24	2589990	S	45	49	94	0.00070
Vibrio sp. LQ2	2883075	S	44	397	441	0.00326
Vibrio sp. FE10	3035453	S	41	24	65	0.00048
Vibrio sp. SCSIO 43153	2819098	S	39	68	107	0.00079
Vibrio sp. sp1	2766781	S	33	659	692	0.00512
Vibrio parahaemolyticus	670	S	3137	997	4134	0.03059
Vibrio alginolyticus	663	S	531	2287	2818	0.02085
Vibrio azureus	512649	S	520	59	579	0.00428
Vibrio diabolicus	50719	S	232	517	749	0.00554
Vibrio antiquarius	150340	S	73	298	371	0.00275
Vibrio campbellii	680	S	355	465	820	0.00607
Vibrio natriegens	691	S	279	402	681	0.00504
Vibrio harveyi	669	S	276	564	840	0.00622
Vibrio owensii	696485	S	275	262	537	0.00397
Vibrio rotiferianus	190895	S	113	122	235	0.00174
Vibrio gazogenes	687	S	4055	375	4430	0.03278
Vibrio tritonius	1435069	S	2470	274	2744	0.02031
Vibrio vulnificus	672	S	2350	427	2777	0.02055
Vibrio mangrovi	474394	S	2301	113	2414	0.01786
Vibrio quintilis	1117707	S	1919	104	2023	0.01497
Vibrio porteresiae	435912	S	1906	208	2114	0.01564
Vibrio aerogenes	92172	S	1798	86	1884	0.01394
Vibrio ruber	184755	S	1776	183	1959	0.01450
Vibrio spartinae	1918945	S	1697	195	1892	0.01400
Vibrio cincinnatiensis	675	S	1638	286	1924	0.01424
Vibrio rhizosphaerae	398736	S	1530	178	1708	0.01264
Vibrio mimicus	674	S	1522	489	2011	0.01488
Vibrio metschnikovii	28172	S	1397	397	1794	0.01328
Vibrio sinaloensis	379097	S	468	54	522	0.00386
Vibrio tubiashii	29498	S	326	222	548	0.00406
Vibrio europaeus	300876	S	217	168	385	0.00285
Vibrio zhugei	2479546	S	1206	263	1469	0.01087
Vibrio aestuarianus	28171	S	1167	180	1347	0.00997
Vibrio fluvialis	676	S	1142	1346	2488	0.01841
Vibrio cholerae	666	S	1076	3633	4709	0.03485
Vibrio palustris	1918946	S	1064	115	1179	0.00872
uncultured Vibrio sp.	114054	S	1016	750	1766	0.01307
Vibrio furnissii	29494	S	1009	416	1425	0.01054
Vibrio coralliilyticus	190893	S	979	789	1768	0.01308
Vibrio scophthalmi	45658	S	934	221	1155	0.00855
Vibrio navarrensis	29495	S	906	303	1209	0.00895
Vibrio metoecus	1481663	S	835	389	1224	0.00906
Vibrio aquimaris	2587862	S	671	51	722	0.00534
Vibrio aphrogenes	1891186	S	670	58	728	0.00539
Vibrio pectenicida	62763	S	648	73	721	0.00534
Vibrio japonicus	1824638	S	608	84	692	0.00512
Vibrio rumoiensis	76258	S	590	340	930	0.00688
Vibrio algicola	2662262	S	587	61	648	0.00480
Vibrio nigripulchritudo	28173	S	564	205	769	0.00569
Vibrio penaeicida	104609	S	557	74	631	0.00467
Vibrio gangliei	2077090	S	542	158	700	0.00518
Vibrio casei	673372	S	531	262	793	0.00587
Vibrio cortegadensis	1328770	S	529	69	598	0.00443
Vibrio tapetis	52443	S	527	26	553	0.00409
Vibrio rarus	413403	S	490	47	537	0.00397
Vibrio taketomensis	2572923	S	490	51	541	0.00400
Vibrio astriarenae	1481923	S	489	51	540	0.00400
Vibrio anguillarum	55601	S	454	666	1120	0.00829
Vibrio ziniensis	2711221	S	453	50	503	0.00372
Vibrio panuliri	1381081	S	447	49	496	0.00367
Vibrio diazotrophicus	685	S	414	92	506	0.00374
Vibrio breoganii	553239	S	393	47	440	0.00326
Vibrio ponticus	265668	S	389	30	419	0.00310
Vibrio gallaecicus	552386	S	351	52	403	0.00298
Vibrio plantisponsor	664643	S	339	87	426	0.00315
Vibrio pelagius	28169	S	335	74	409	0.00303
Vibrio cyclitrophicus	47951	S	281	213	494	0.00366
Vibrio gallicus	190897	S	277	29	306	0.00226
Vibrio artabrorum	446374	S	252	54	306	0.00226
Vibrio comitans	413401	S	251	36	287	0.00212
Vibrio alfacsensis	1074311	S	220	139	359	0.00266
Vibrio neonatus	278860	S	220	20	240	0.00178
Vibrio lentus	136468	S	209	107	316	0.00234
Vibrio qinghaiensis	2025808	S	199	168	367	0.00272
Vibrio kanaloae	170673	S	197	105	302	0.00223
Vibrio ishigakensis	1481914	S	186	13	199	0.00147
Vibrio inusitatus	413402	S	182	24	206	0.00152
Vibrio chagasii	170679	S	176	37	213	0.00158
Vibrio paracholerae	650003	S	173	516	689	0.00510
Vibrio crassostreae	246167	S	158	103	261	0.00193
Vibrio mediterranei	689	S	152	128	280	0.00207
Vibrio fortis	212667	S	145	26	171	0.00127
Vibrio splendidus	29497	S	136	150	286	0.00212
Vibrio ostreae	2841925	S	122	221	343	0.00254
Vibrio celticus	446372	S	122	101	223	0.00165
Vibrio tarriae	2014742	S	116	142	258	0.00191
Vibrio coralliirubri	1516159	S	93	71	164	0.00121
Vibrio atlanticus	693153	S	91	78	169	0.00125
Vibrio gigantis	296199	S	84	31	115	0.00085
Vibrio echinoideorum	2100116	S	68	27	95	0.00070
Vibrio toranzoniae	1194427	S	64	37	101	0.00075
Vibrio maritimus	990268	S	59	19	78	0.00058
Vibrio cidicii	1763883	S	50	31	81	0.00060
Vibrio tasmaniensis	212663	S	45	38	83	0.00061
Vibrio hyugaensis	1534743	S	42	29	71	0.00053
Vibrio bathopelagicus	2777577	S	41	19	60	0.00044
Photobacterium sp. GJ3	2829502	S	252	21	273	0.00202
Photobacterium sp. CCB-ST2H9	2912855	S	157	14	171	0.00127
Photobacterium sp. TLY01	2907534	S	149	19	168	0.00124
Photobacterium sp. TY1-4	2899122	S	128	14	142	0.00105
Photobacterium sp. GSS17	3020715	S	73	162	235	0.00174
Photobacterium sp. DA100	3027472	S	43	5	48	0.00036
Photobacterium damselae	38293	S	484	167	651	0.00482
Photobacterium leiognathi	553611	S	448	77	525	0.00388
Photobacterium sanguinicancri	875932	S	180	27	207	0.00153
Photobacterium profundum	74109	S	168	14	182	0.00135
Photobacterium swingsii	680026	S	143	23	166	0.00123
Photobacterium toruni	1935446	S	138	28	166	0.00123
Photobacterium phosphoreum	659	S	118	26	144	0.00107
Photobacterium atrarenae	865757	S	105	11	116	0.00086
Aliivibrio fischeri	668	S	285	18	303	0.00224
Aliivibrio salmonicida	40269	S	260	114	374	0.00277
Salinivibrio kushneri	1908198	S	198	16	214	0.00158
Salinivibrio proteolyticus	334715	S	140	67	207	0.00153
Salinivibrio sp. YCSC6	2003370	S	75	43	118	0.00087
Grimontia hollisae	673	S	239	25	264	0.00195
Grimontia sp. NTOU-MAR1	3111011	S	102	38	140	0.00104
Grimontia kaedaensis	2872157	S	47	18	65	0.00048
Thaumasiovibrio subtropicus	1891207	S	162	19	181	0.00134
Candidatus Enterovibrio luxaltus	1927128	S	133	0	133	0.00098
Enterobacter cloacae	550	S	69	133	202	0.00149
Enterobacter hormaechei	158836	S	41	463	504	0.00373
Enterobacter sp. RHBSTW-00994	2742676	S	40	45	85	0.00063
Enterobacter mori	539813	S	56	30	86	0.00064
Citrobacter sp. RHB25-C09	2742624	S	50	41	91	0.00067
Citrobacter sp. R56	1573676	S	33	73	106	0.00078
Citrobacter amalonaticus	35703	S	44	72	116	0.00086
Citrobacter enshiensis	2971264	S	39	76	115	0.00085
Citrobacter farmeri	67824	S	34	64	98	0.00073
Klebsiella oxytoca	571	S	75	36	111	0.00082
Klebsiella pneumoniae	573	S	51	782	833	0.00616
Klebsiella quasipneumoniae	1463165	S	32	60	92	0.00068
Escherichia coli	562	S	212	2037	2249	0.01664
Escherichia albertii	208962	S	56	52	108	0.00080
Escherichia sp. E4742	2044467	S	53	23	76	0.00056
Escherichia marmotae	1499973	S	49	32	81	0.00060
Kosakonia radicincitans	283686	S	46	50	96	0.00071
Kosakonia oryzendophytica	1005665	S	40	18	58	0.00043
Kosakonia arachidis	551989	S	32	10	42	0.00031
Candidatus Gullanella endobia	1070130	S	46	0	46	0.00034
Salmonella enterica	28901	S	92	5575	5667	0.04193
Salmonella bongori	54736	S	34	24	58	0.00043
Leclercia adecarboxylata	83655	S	64	104	168	0.00124
Cedecea neteri	158822	S	99	13	112	0.00083
Kluyvera intermedia	61648	S	39	27	66	0.00049
Kluyvera cryocrescens	580	S	36	17	53	0.00039
Mangrovibacter phragmitis	1691903	S	111	80	191	0.00141
Buttiauxella selenatireducens	3073902	S	40	42	82	0.00061
Plesiomonas shigelloides	703	S	98	19	117	0.00087
Scandinavium goeteborgense	1851514	S	65	8	73	0.00054
Phytobacter ursingii	1972431	S	33	38	71	0.00053
Franconibacter daqui	2047724	S	36	4	40	0.00030
Providencia alcalifaciens	126385	S	239	297	536	0.00397
Providencia sp. R33	2828763	S	53	44	97	0.00072
Providencia manganoxydans	2923283	S	57	26	83	0.00061
Providencia rustigianii	158850	S	44	32	76	0.00056
Proteus mirabilis	584	S	178	168	346	0.00256
Proteus vulgaris	585	S	84	249	333	0.00246
Proteus hauseri	183417	S	53	14	67	0.00050
Proteus columbae	1987580	S	32	78	110	0.00081
Xenorhabdus poinarii	40577	S	157	40	197	0.00146
Xenorhabdus budapestensis	290110	S	118	18	136	0.00101
Xenorhabdus sp. SF857	3026967	S	48	14	62	0.00046
Xenorhabdus nematophila	628	S	45	10	55	0.00041
Xenorhabdus hominickii	351679	S	45	9	54	0.00040
Photorhabdus asymbiotica	291112	S	73	5	78	0.00058
Arsenophonus apicola	2879119	S	35	33	68	0.00050
Morganella morganii	582	S	92	25	117	0.00087
Moellerella wisconsensis	158849	S	48	37	85	0.00063
Yersinia similis	367190	S	79	21	100	0.00074
Yersinia enterocolitica	630	S	72	33	105	0.00078
Yersinia ruckeri	29486	S	59	14	73	0.00054
Yersinia rohdei	29485	S	58	19	77	0.00057
Yersinia kristensenii	28152	S	46	35	81	0.00060
Yersinia alsatica	2890317	S	42	20	62	0.00046
Yersinia frederiksenii	29484	S	35	139	174	0.00129
Yersinia mollaretii	33060	S	35	15	50	0.00037
Serratia marcescens	615	S	63	171	234	0.00173
Serratia fonticola	47917	S	49	25	74	0.00055
Serratia plymuthica	82996	S	40	18	58	0.00043
Rahnella aceris	2703885	S	44	39	83	0.00061
Pantoea vagans	470934	S	86	41	127	0.00094
Pantoea stewartii	66269	S	49	108	157	0.00116
Candidatus Pantoea carbekii	1235990	S	43	1	44	0.00033
Pantoea alhagi	1891675	S	39	21	60	0.00044
Pantoea agglomerans	549	S	38	10	48	0.00036
Pantoea ananatis	553	S	37	20	57	0.00042
Candidatus Erwinia haradaeae	1922217	S	36	27	63	0.00047
Tatumella ptyseos	82987	S	64	8	72	0.00053
Tatumella citrea	53336	S	49	5	54	0.00040
Paramixta manurensis	2740817	S	70	13	83	0.00061
Winslowiella toletana	92490	S	67	17	84	0.00062
Buchnera aphidicola	9	S	64	1	65	0.00048
Duffyella gerundensis	1619313	S	47	12	59	0.00044
Dickeya zeae	204042	S	164	172	336	0.00249
Dickeya chrysanthemi	556	S	74	16	90	0.00067
Pectobacterium cacticida	69221	S	89	11	100	0.00074
Pectobacterium parmentieri	1905730	S	49	19	68	0.00050
Pectobacterium brasiliense	180957	S	45	96	141	0.00104
Brenneria uluponensis	3057057	S	78	52	130	0.00096
Brenneria goodwinii	1109412	S	37	22	59	0.00044
Musicola paradisiaca	69223	S	38	0	38	0.00028
Limnobaculum parvum	2172103	S	54	12	66	0.00049
Limnobaculum zhutongyuii	2498113	S	54	11	65	0.00048
Pragia fontium	82985	S	68	5	73	0.00054
Hafnia paralvei	546367	S	43	72	115	0.00085
Shewanella sp. MTB7	2746932	S	48	3	51	0.00038
Shewanella sp. MR-4	60480	S	37	21	58	0.00043
Shewanella sp. NFH-SH190041	2950245	S	36	4	40	0.00030
Shewanella xiamenensis	332186	S	132	363	495	0.00366
Shewanella psychropiezotolerans	2593655	S	121	15	136	0.00101
Shewanella decolorationis	256839	S	92	73	165	0.00122
Shewanella baltica	62322	S	82	89	171	0.00127
Shewanella denitrificans	192073	S	80	8	88	0.00065
Shewanella dokdonensis	712036	S	69	3	72	0.00053
Shewanella marisflavi	260364	S	63	10	73	0.00054
Shewanella oneidensis	70863	S	62	13	75	0.00055
Shewanella yunxiaonensis	2829809	S	58	5	63	0.00047
Shewanella sediminis	271097	S	56	6	62	0.00046
Shewanella algae	38313	S	49	28	77	0.00057
Shewanella woodyi	60961	S	46	4	50	0.00037
Shewanella chilikensis	558541	S	42	85	127	0.00094
Shewanella pealeana	70864	S	35	4	39	0.00029
Shewanella putrefaciens	24	S	34	90	124	0.00092
Parashewanella tropica	2547970	S	33	2	35	0.00026
Pseudoalteromonas sp. CF6-2	562716	S	41	137	178	0.00132
Pseudoalteromonas rubra	43658	S	173	115	288	0.00213
Pseudoalteromonas luteoviolacea	43657	S	103	26	129	0.00095
Pseudoalteromonas xiamenensis	882626	S	94	14	108	0.00080
Pseudoalteromonas spongiae	298657	S	79	73	152	0.00112
Pseudoalteromonas tunicata	314281	S	55	15	70	0.00052
Pseudoalteromonas piratica	1348114	S	38	36	74	0.00055
Psychrosphaera ytuae	2820710	S	52	20	72	0.00053
Alteromonas sp. M12	3135644	S	49	22	71	0.00053
Alteromonas sp. RKMC-009	2267264	S	37	20	57	0.00042
Alteromonas macleodii	28108	S	91	97	188	0.00139
Alteromonas pelagimontana	1858656	S	60	14	74	0.00055
Salinimonas sediminis	2303538	S	35	11	46	0.00034
Agarivorans gilvus	680279	S	53	60	113	0.00084
Saccharobesus litoralis	2172099	S	61	3	64	0.00047
Aliiglaciecola sp. LCG003	3053655	S	51	19	70	0.00052
Saliniradius amylolyticus	2183582	S	51	5	56	0.00041
Paraneptunicella aestuarii	2831148	S	36	2	38	0.00028
Thalassotalea sp. HSM 43	2552945	S	50	6	56	0.00041
Thalassotalea sp. LPB0316	2769490	S	40	13	53	0.00039
Thalassotalea atypica	2054316	S	51	6	57	0.00042
Thalassotalea sediminis	1759089	S	41	6	47	0.00035
Thalassotalea crassostreae	1763536	S	37	5	42	0.00031
Colwellia sp. M166	2583805	S	42	46	88	0.00065
Colwellia sp. PAMC 20917	1816218	S	36	8	44	0.00033
Moritella sp. 24	2746230	S	38	70	108	0.00080
Moritella yayanosii	69539	S	89	32	121	0.00090
Moritella marina	90736	S	62	16	78	0.00058
Idiomarina abyssalis	86102	S	42	3	45	0.00033
Idiomarina loihiensis	135577	S	32	16	48	0.00036
Pseudidiomarina andamanensis	1940690	S	72	4	76	0.00056
Psychromonas ingrahamii	357794	S	102	5	107	0.00079
Ferrimonas balearica	44012	S	37	3	40	0.00030
Celerinatantimonas diazotrophica	412034	S	2571	97	2668	0.01974
Haemophilus parainfluenzae	729	S	140	40	180	0.00133
Haemophilus haemolyticus	726	S	83	29	112	0.00083
Haemophilus influenzae	727	S	58	39	97	0.00072
Pasteurella atlantica	2827233	S	91	9	100	0.00074
Pasteurella multocida	747	S	49	54	103	0.00076
Pasteurella canis	753	S	45	9	54	0.00040
Actinobacillus pleuropneumoniae	715	S	53	37	90	0.00067
Actinobacillus genomosp. 2	230709	S	36	9	45	0.00033
Aggregatibacter actinomycetemcomitans	714	S	38	18	56	0.00041
Gallibacterium anatis	750	S	81	28	109	0.00081
Avibacterium paragallinarum	728	S	50	20	70	0.00052
Glaesserella parasuis	738	S	56	66	122	0.00090
Histophilus somni	731	S	42	11	53	0.00039
Pseudomonas sp. OIL-1	2706126	S	32	67	99	0.00073
Pseudomonas putida	303	S	60	188	248	0.00184
Entomomonas moraniae	2213226	S	101	2	103	0.00076
Halopseudomonas phragmitis	1931241	S	48	2	50	0.00037
Denitrificimonas caeni	521720	S	45	11	56	0.00041
Marinomonas sp. CT5	2066133	S	32	2	34	0.00025
Marinomonas arctica	383750	S	58	21	79	0.00058
Marinomonas rhizomae	491948	S	58	34	92	0.00068
Marinomonas primoryensis	178399	S	45	18	63	0.00047
Marinomonas mediterranea	119864	S	32	7	39	0.00029
Bermanella marisrubri	207949	S	40	4	44	0.00033
Aeromonas veronii	654	S	67	78	145	0.00107
Aeromonas hydrophila	644	S	63	99	162	0.00120
Aeromonas salmonicida	645	S	48	21	69	0.00051
Aeromonas rivuli	648794	S	48	7	55	0.00041
uncultured Tolumonas sp.	263765	S	220	21	241	0.00178
Tolumonas auensis	43948	S	57	18	75	0.00055
Thiomicrorhabdus sp.	2039724	S	44	4	48	0.00036
Methylophaga frappieri	754477	S	32	17	49	0.00036
Thiomicrospira sp. R3	3035472	S	44	1	45	0.00033
Hydrogenovibrio marinus	28885	S	34	2	36	0.00027
Thiothrix litoralis	2891210	S	32	0	32	0.00024
Gilliamella sp. ESL0443	2704655	S	38	34	72	0.00053
Gilliamella sp. ESL0441	2704654	S	32	17	49	0.00036
Gilliamella apis	1970738	S	39	2	41	0.00030
Zophobihabitans entericus	1635327	S	37	1	38	0.00028
Methylomonas sp. EFPC1	2812647	S	43	78	121	0.00090
Methylococcus capsulatus	414	S	37	23	60	0.00044
Legionella adelaidensis	45056	S	40	2	42	0.00031
Legionella israelensis	454	S	39	0	39	0.00029
Candidatus Nitrosacidococcus sp. I8	2942908	S	41	1	42	0.00031
Kangiella aquimarina	261965	S	38	2	40	0.00030
Kangiella geojedonensis	914150	S	35	0	35	0.00026
Cupriavidus taiwanensis	164546	S	409	24	433	0.00320
Ramlibacter tataouinensis	94132	S	36	7	43	0.00032
Deefgea piscis	2739061	S	32	0	32	0.00024
uncultured Cohaesibacter sp.	1002546	S	40	61	101	0.00075
Falsirhodobacter algicola	2692330	S	36	46	82	0.00061
Bacillus mycoides	1405	S	43	143	186	0.00138
Gracilibacillus salitolerans	2663022	S	32	19	51	0.00038
Priestia megaterium	1404	S	34	68	102	0.00075
Paenibacillus sp. FSL E2-0151	2921357	S	32	141	173	0.00128
Paenibacillus psychroresistens	1778678	S	37	9	46	0.00034
Brevibacillus brevis	1393	S	34	47	81	0.00060
Alicyclobacillus fastidiosus	392011	S	34	12	46	0.00034
Streptococcus oralis	1303	S	39	74	113	0.00084
Clostridium cadaveris	1529	S	41	90	131	0.00097
Streptomyces rapamycinicus	1226757	S	40	37	77	0.00057
Synechococcus elongatus	32046	S	32	0	32	0.00024
Mycoplasmopsis anatis	171279	S	49	3	52	0.00038
Kordia sp. SMS9	2282170	S	50	74	124	0.00092
Marinifilum fragile	570161	S	49	34	83	0.00061
Labilibaculum antarcticum	1717717	S	32	21	53	0.00039
Haliscomenobacter hydrossis	2350	S	42	6	48	0.00036
Fervidobacterium pennivorans	93466	S	32	28	60	0.00044