name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Streptomyces sp. T12	477697	S	2006881	64572	2071453	0.44939
Streptomyces sp. WAC00303	2933779	S	3566	352	3918	0.00085
Streptomyces sp. NBC_01304	2903818	S	311	6	317	0.00007
Streptomyces sp. NBC_00588	2975784	S	230	7	237	0.00005
Streptomyces sp. NBC_01257	2903799	S	161	4	165	0.00004
Streptomyces sp. SCUT-3	2684469	S	117	5	122	0.00003
Streptomyces sp. NBC_00316	2975710	S	101	3	104	0.00002
Streptomyces sp. NBC_01351	2903833	S	95	2	97	0.00002
Streptomyces sp. VNUA116	3062449	S	85	3	88	0.00002
Streptomyces sp. CB01881	2078691	S	83	0	83	0.00002
Streptomyces sp. Q6	3118173	S	69	2	71	0.00002
Streptomyces sp. SCSIO 30461	3118085	S	66	1	67	0.00001
Streptomyces sp. NBC_01235	2903788	S	65	1	66	0.00001
Streptomyces sp. NBC_01485	2903884	S	59	1	60	0.00001
Streptomyces sp. NBC_00358	2975725	S	58	1	59	0.00001
Streptomyces sp. NBC_01788	2975940	S	55	1	56	0.00001
Streptomyces sp. SS162	3108484	S	54	18	72	0.00002
Streptomyces sp. MRC013	2898276	S	54	3	57	0.00001
Streptomyces sp. BRB040	3142634	S	52	2	54	0.00001
Streptomyces sp. NBC_01255	2903798	S	48	1	49	0.00001
Streptomyces sp. CCM_MD2014	1561022	S	47	2	49	0.00001
Streptomyces sp. NBC_01477	2976015	S	45	1	46	0.00001
Streptomyces sp. TLI_053	1855352	S	44	1	45	0.00001
Streptomyces sp. W1SF4	2305220	S	44	2	46	0.00001
Streptomyces sp. NBC_01352	2903834	S	43	1	44	0.00001
Streptomyces sp. NBC_01465	2903878	S	41	1	42	0.00001
Streptomyces sp. NBC_01497	2903885	S	41	1	42	0.00001
Streptomyces sp. DG1A-41	3125779	S	37	1	38	0.00001
Streptomyces sp. NBC_01760	2975931	S	34	15	49	0.00001
Streptomyces sp. WMMC500	3015154	S	33	0	33	0.00001
Streptomyces sp. SCSIO 75703	3112165	S	32	1	33	0.00001
Streptomyces sviceus	285530	S	1150	1054	2204	0.00048
Streptomyces albidoflavus	1886	S	568	225	793	0.00017
Streptomyces melanogenes	67326	S	401	14	415	0.00009
Streptomyces pristinaespiralis	38300	S	235	88	323	0.00007
Streptomyces canus	58343	S	59	1	60	0.00001
Streptomyces zaomyceticus	68286	S	139	4	143	0.00003
Streptomyces rapamycinicus	1226757	S	85	1	86	0.00002
Streptomyces hygroscopicus	1912	S	38	1	39	0.00001
Streptomyces venezuelae	54571	S	136	4	140	0.00003
Streptomyces changanensis	2964669	S	100	3	103	0.00002
Streptomyces chartreusis	1969	S	98	3	101	0.00002
Streptomyces cyaneochromogenes	2496836	S	83	2	85	0.00002
Streptomyces cyaneofuscatus	66883	S	33	1	34	0.00001
Streptomyces tsukubensis	83656	S	78	2	80	0.00002
Streptomyces asoensis	249586	S	76	2	78	0.00002
Streptomyces autolyticus	75293	S	71	9	80	0.00002
Streptomyces tubercidicus	47759	S	70	2	72	0.00002
Streptomyces niveus	193462	S	65	1	66	0.00001
Streptomyces angustmyceticus	285578	S	65	2	67	0.00001
Streptomyces uncialis	1048205	S	64	2	66	0.00001
Streptomyces anthocyanicus	68174	S	57	19	76	0.00002
Streptomyces spongiicola	1690221	S	57	2	59	0.00001
Streptomyces brevispora	887462	S	56	1	57	0.00001
Streptomyces bathyalis	2710756	S	55	1	56	0.00001
Streptomyces collinus	42684	S	51	2	53	0.00001
Streptomyces roseirectus	2768066	S	48	1	49	0.00001
Streptomyces paludis	2282738	S	48	1	49	0.00001
Streptomyces noursei	1971	S	47	1	48	0.00001
Streptomyces coeruleorubidus	116188	S	47	1	48	0.00001
Streptomyces halobius	2879846	S	47	1	48	0.00001
Streptomyces clavuligerus	1901	S	46	1	47	0.00001
Streptomyces vinaceus	1960	S	41	2	43	0.00001
Streptomyces chromofuscus	42881	S	40	1	41	0.00001
Streptomyces pluripotens	1355015	S	38	1	39	0.00001
Streptomyces glaucescens	1907	S	38	1	39	0.00001
Streptomyces formicae	1616117	S	38	1	39	0.00001
Streptomyces kanamyceticus	1967	S	34	0	34	0.00001
Kitasatospora sp. CM 4170	3075627	S	42	19	61	0.00001
Kitasatospora sp. HUAS MG31	3156397	S	32	7	39	0.00001
Streptantibioticus cattleyicolor	29303	S	56	1	57	0.00001
Microbacterium liquefaciens	33918	S	4020	472	4492	0.00097
Microbacterium sp. H1-D42	2925844	S	53	1	54	0.00001
Microbacterium sp. AZCO	3142976	S	38	1	39	0.00001
Microbacterium sp. MM2322	3157631	S	36	1	37	0.00001
Microbacterium invictum	515415	S	53	0	53	0.00001
Microbacterium resistens	156977	S	38	1	39	0.00001
Curtobacterium flaccumfaciens	2035	S	2943	310	3253	0.00071
Agromyces flavus	589382	S	56	2	58	0.00001
Cryobacterium sp. PAMC25264	2861288	S	43	2	45	0.00001
Cryobacterium arcticum	670052	S	52	2	54	0.00001
Rathayibacter sp. VKM Ac-2805	2609258	S	39	36	75	0.00002
Agrococcus sp. ProA11	3153752	S	63	2	65	0.00001
Herbiconiux sp. L3-i23	2905871	S	80	2	82	0.00002
Subtercola endophyticus	2895559	S	84	2	86	0.00002
Salinibacterium sp. M195	2583374	S	44	2	46	0.00001
Arthrobacter sp. NicSoilC5	2831000	S	3068	259	3327	0.00072
Arthrobacter zhangbolii	2886936	S	140	7	147	0.00003
Kocuria palustris	71999	S	62	8	70	0.00002
Glutamicibacter creatinolyticus	162496	S	58	5	63	0.00001
Cellulomonas fimi	1708	S	118	14	132	0.00003
Cellulomonas fengjieae	2819978	S	44	2	46	0.00001
Cellulomonas taurus	2729175	S	39	2	41	0.00001
Janibacter melonis	262209	S	108	4	112	0.00002
Janibacter sp. CX7	2963431	S	65	5	70	0.00002
Phycicoccus endophyticus	1690220	S	38	1	39	0.00001
Georgenia sp. TF02-10	2917725	S	85	4	89	0.00002
Georgenia wutianyii	2585135	S	68	3	71	0.00002
Devriesea agamarum	472569	S	53	0	53	0.00001
Cellulosimicrobium cellulans	1710	S	48	29	77	0.00002
Xylanimonas allomyrinae	2509459	S	47	3	50	0.00001
Miniimonas sp. S16	2171623	S	68	8	76	0.00002
Mycobacterium canetti	78331	S	1397	549	1946	0.00042
Mycobacterium kubicae	120959	S	77	6	83	0.00002
Mycobacterium dioxanotrophicus	482462	S	39	4	43	0.00001
Mycolicibacterium fallax	1793	S	90	11	101	0.00002
Mycolicibacterium austroafricanum	39687	S	62	40	102	0.00002
Mycolicibacterium aubagnense	319707	S	54	2	56	0.00001
Mycolicibacterium rufum	318424	S	39	3	42	0.00001
Mycolicibacterium litorale	758802	S	39	3	42	0.00001
Mycolicibacterium helvum	1534349	S	35	0	35	0.00001
Mycolicibacter sp. MU0083	3064287	S	38	4	42	0.00001
Nocardia sp. NBC_01730	2975998	S	258	5	263	0.00006
Nocardia wallacei	480035	S	101	3	104	0.00002
Nocardia salmonicida	53431	S	77	4	81	0.00002
Nocardia puris	208602	S	59	2	61	0.00001
Nocardia tengchongensis	2055889	S	54	1	55	0.00001
Nocardia arthritidis	228602	S	50	0	50	0.00001
Nocardia cyriacigeorgica	135487	S	44	1	45	0.00001
Nocardia vulneris	1141657	S	39	4	43	0.00001
Rhodococcus aetherivorans	191292	S	37	147	184	0.00004
Corynebacterium doosanense	1121358	S	75	7	82	0.00002
Corynebacterium atypicum	191610	S	59	4	63	0.00001
Corynebacterium gottingense	2041036	S	33	67	100	0.00002
Corynebacterium guangdongense	1783348	S	33	1	34	0.00001
Corynebacterium xerosis	1725	S	33	6	39	0.00001
Gordonia phthalatica	1136941	S	40	7	47	0.00001
Gordonia polyisoprenivorans	84595	S	40	49	89	0.00002
Amycolatopsis sp. Hca4	2742131	S	206	217	423	0.00009
Amycolatopsis sp. FDAARGOS 1241	2778070	S	100	32	132	0.00003
Amycolatopsis sp. NBC_01488	2903563	S	66	83	149	0.00003
Amycolatopsis sp. 2-2	715472	S	48	48	96	0.00002
Amycolatopsis acidiphila	715473	S	161	16	177	0.00004
Saccharopolyspora gloriosae	455344	S	151	20	171	0.00004
Saccharopolyspora sp. SCSIO 74807	3118084	S	54	4	58	0.00001
Saccharopolyspora rosea	524884	S	50	4	54	0.00001
Pseudonocardia abyssalis	2792008	S	134	5	139	0.00003
Pseudonocardia broussonetiae	2736640	S	33	1	34	0.00001
Actinoalloteichus sp. AHMU CJ021	2072503	S	41	1	42	0.00001
Actinoalloteichus sp. GBA129-24	1612551	S	36	12	48	0.00001
Saccharothrix sp. 6-C	2781735	S	40	5	45	0.00001
Actinosynnema pretiosum	42197	S	46	15	61	0.00001
Actinokineospora sp. UTMC 2448	2268449	S	51	5	56	0.00001
Micromonospora sp. WMMD882	3015151	S	50	12	62	0.00001
Micromonospora sp. NBC_01796	2975987	S	50	20	70	0.00002
Micromonospora sp. WMMD812	3015152	S	44	12	56	0.00001
Micromonospora viridifaciens	1881	S	159	14	173	0.00004
Micromonospora tulbaghiae	479978	S	110	42	152	0.00003
Micromonospora purpureochromogenes	47872	S	59	13	72	0.00002
Micromonospora aurantiaca	47850	S	41	61	102	0.00002
Dactylosporangium roseum	47989	S	47	47	94	0.00002
Dactylosporangium sp. AC04546	2862460	S	35	4	39	0.00001
Actinoplanes sp. L3-i22	2836373	S	57	16	73	0.00002
Phytohabitans flavus	1076124	S	94	2	96	0.00002
Phytohabitans suffuscus	624315	S	32	1	33	0.00001
Plantactinospora sp. KBS50	2024580	S	40	12	52	0.00001
Catellatospora sp. IY07-71	2728827	S	52	1	53	0.00001
Nocardioides sp. TF02-7	2917724	S	60	1	61	0.00001
Nocardioides sp. zg-1228	2763008	S	44	1	45	0.00001
Nocardioides coralli	2872154	S	38	0	38	0.00001
Nocardioides anomalus	2712223	S	32	0	32	0.00001
Pimelobacter simplex	2045	S	41	1	42	0.00001
Friedmanniella luteola	546871	S	41	0	41	0.00001
Cutibacterium acnes	1747	S	244	83	327	0.00007
Raineyella fluvialis	2662261	S	139	3	142	0.00003
Raineyella sp. LH-20	3081204	S	36	1	37	0.00001
Microlunatus elymi	2596828	S	59	0	59	0.00001
Kribbella sp. NBC_01484	2903579	S	36	8	44	0.00001
Streptosporangium sp. 'caverna'	2202249	S	88	100	188	0.00004
Nonomuraea phyllanthi	2219224	S	57	4	61	0.00001
[Actinomadura] parvosata	1955412	S	46	7	53	0.00001
Nonomuraea coxensis	404386	S	36	3	39	0.00001
Thermobifida halotolerans	483545	S	54	2	56	0.00001
Actinomadura graeca	2750812	S	87	2	89	0.00002
Actinomadura citrea	46158	S	43	3	46	0.00001
Actinoallomurus sp. NBC_01490	2903557	S	60	0	60	0.00001
Actinomyces respiraculi	2744574	S	69	43	112	0.00002
Gleimia hominis	595468	S	32	2	34	0.00001
Bifidobacterium subtile	77635	S	48	14	62	0.00001
Bifidobacterium longum	216816	S	36	51	87	0.00002
Blastococcus saxobsidens	138336	S	72	0	72	0.00002
Blastococcus brunescens	1564165	S	35	0	35	0.00001
Kineococcus radiotolerans	131568	S	61	62	123	0.00003
Nakamurella sp. PAMC28650	2762325	S	42	0	42	0.00001
Catenulispora acidiphila	304895	S	39	0	39	0.00001
Conexibacter sp. S30A1	2937800	S	47	53	100	0.00002
Conexibacter woesei	191495	S	51	0	51	0.00001
Paraconexibacter antarcticus	2949664	S	32	0	32	0.00001
Miltoncostaea oceani	2843216	S	42	0	42	0.00001
Parafannyhessea umbonata	604330	S	53	11	64	0.00001
Actinomarinicola tropica	2789776	S	43	0	43	0.00001
Bacillus cereus	1396	S	187342	329940	517282	0.11222
Bacillus thuringiensis	1428	S	1009	1394	2403	0.00052
Bacillus paranthracis	2026186	S	120	292	412	0.00009
Bacillus mycoides	1405	S	103	43	146	0.00003
Bacillus amyloliquefaciens	1390	S	3586	6404	9990	0.00217
Bacillus velezensis	492670	S	115	391	506	0.00011
Bacillus inaquosorum	483913	S	36	6	42	0.00001
Bacillus sp. FJAT-18017	1705566	S	274	29	303	0.00007
Bacillus carboniphilus	86663	S	71	6	77	0.00002
Bacillus methanolicus	1471	S	49	8	57	0.00001
Priestia megaterium	1404	S	56	24	80	0.00002
Cytobacillus gottheilii	859144	S	51	15	66	0.00001
Rossellomorea vietnamensis	218284	S	78	12	90	0.00002
Virgibacillus halodenitrificans	1482	S	49	24	73	0.00002
Mesobacillus sp. AQ2	3043332	S	69	12	81	0.00002
Fictibacillus phosphorivorans	1221500	S	44	1	45	0.00001
Staphylococcus succinus	61015	S	955	185	1140	0.00025
Staphylococcus aureus	1280	S	510	2486	2996	0.00065
Staphylococcus epidermidis	1282	S	86	23	109	0.00002
Staphylococcus hominis	1290	S	71	28	99	0.00002
Staphylococcus equorum	246432	S	35	19	54	0.00001
Staphylococcus haemolyticus	1283	S	33	10	43	0.00001
Mammaliicoccus sciuri	1296	S	48	11	59	0.00001
Paenibacillus sp. PK4536	3024576	S	995	284	1279	0.00028
Paenibacillus sp. JDR-2	324057	S	58	5	63	0.00001
Paenibacillus sp. FSL R7-0331	1536773	S	46	17	63	0.00001
Listeria monocytogenes	1639	S	210	23	233	0.00005
Alicyclobacillus acidocaldarius	405212	S	133	3	136	0.00003
Polycladomyces abyssicola	1125966	S	44	3	47	0.00001
Lactiplantibacillus pentosus	1589	S	129375	12983	142358	0.03088
Lactiplantibacillus plantarum	1590	S	10060	1695	11755	0.00255
Lactobacillus sp. CBA3605	2099788	S	713	144	857	0.00019
Weissella viridescens	1629	S	79	8	87	0.00002
Streptococcus sp. NPS 308	1902136	S	1055	249	1304	0.00028
Streptococcus pluranimalium	82348	S	1031	309	1340	0.00029
Streptococcus suis	1307	S	39	11	50	0.00001
Lactococcus garvieae	1363	S	59	20	79	0.00002
uncultured Trichococcus sp.	189665	S	314	40	354	0.00008
Enterococcus faecalis	1351	S	124	99	223	0.00005
Clostridium botulinum	1491	S	8742	7622	16364	0.00355
Clostridium sp. JN-9	2507159	S	2869	325	3194	0.00069
Clostridium sp. OS1-26	3070681	S	39	3	42	0.00001
Clostridium sp. JS66	3064705	S	35	19	54	0.00001
Clostridium tetani	1513	S	478	57	535	0.00012
Clostridium perfringens	1502	S	256	3777	4033	0.00087
Clostridium estertheticum	238834	S	140	13	153	0.00003
Clostridium pasteurianum	1501	S	87	3	90	0.00002
Clostridium saccharobutylicum	169679	S	68	7	75	0.00002
Clostridium baratii	1561	S	63	6	69	0.00001
Clostridium beijerinckii	1520	S	62	251	313	0.00007
Clostridium sporogenes	1509	S	53	155	208	0.00005
Clostridium gelidum	704125	S	48	3	51	0.00001
Clostridium argentinense	29341	S	46	3	49	0.00001
Clostridium butyricum	1492	S	42	177	219	0.00005
Clostridium acetobutylicum	1488	S	39	1	40	0.00001
Clostridium bornimense	1216932	S	38	20	58	0.00001
Clostridium scatologenes	1548	S	37	38	75	0.00002
Clostridium intestinale	36845	S	36	5	41	0.00001
Clostridium septicum	1504	S	36	5	41	0.00001
Crassaminicella indica	2855394	S	311	151	462	0.00010
Oceanirhabdus sp. W0125-5	2999116	S	44	1	45	0.00001
Paludicola sp. MB14-C6	3070656	S	128	25	153	0.00003
Ruminiclostridium herbifermentans	2488810	S	34	82	116	0.00003
Aristaeella lactis	3046383	S	99	1	100	0.00002
Caldinitratiruptor microaerophilus	671077	S	39	2	41	0.00001
Maliibacterium massiliense	2086585	S	47	31	78	0.00002
Tepidanaerobacter acetatoxydans	499229	S	3632	105	3737	0.00081
Zhaonella formicivorans	2528593	S	2669	445	3114	0.00068
Mahella australiensis	252966	S	1843	1288	3131	0.00068
Mediterraneibacter gnavus	33038	S	259	742	1001	0.00022
[Clostridium] scindens	29347	S	36	36	72	0.00002
Romboutsia ilealis	1115758	S	149	41	190	0.00004
Romboutsia sp. CE17	2724150	S	34	7	41	0.00001
Clostridioides difficile	1496	S	146	1220	1366	0.00030
Paraclostridium sordellii	1505	S	53	6	59	0.00001
Paraclostridium bifermentans	1490	S	33	3	36	0.00001
Halocella sp. SP3-1	2382161	S	41	6	47	0.00001
Halobacteroides halobius	42422	S	33	0	33	0.00001
Erysipelothrix larvae	1514105	S	922	173	1095	0.00024
Intestinibaculum porci	2487118	S	586	117	703	0.00015
Thomasclavelia spiroformis	29348	S	859	169	1028	0.00022
Peptoniphilus equinus	3016343	S	674	46	720	0.00016
Peptoniphilus genitalis	3036303	S	37	34	71	0.00002
Finegoldia magna	1260	S	44	23	67	0.00001
Sedimentibacter sp. MB35-C1	3070995	S	41	1	42	0.00001
Selenobaculum gibii	3054208	S	514	29	543	0.00012
Selenomonas sp. oral taxon 920	1884263	S	140	11	151	0.00003
Pectinatus frisingensis	865	S	57	1	58	0.00001
Limnospira indica	147322	S	10944	19518	30462	0.00661
Oxynema aestuarii	2874213	S	3193	1610	4803	0.00104
Planktothrix agardhii	1160	S	35	1650	1685	0.00037
Moorena producens	1155739	S	2700	340	3040	0.00066
[Leptolyngbya] sp. PCC 7376	111781	S	4235	1258	5493	0.00119
Geminocystis sp. NIES-3709	1617448	S	63	3551	3614	0.00078
Geminocystis herdmanii	669359	S	92	69	161	0.00003
Microcystis viridis	44822	S	69	3494	3563	0.00077
Gloeothece verrucosa	2546359	S	2625	914	3539	0.00077
Candidatus Atelocyanobacterium thalassa	713887	S	560	409	969	0.00021
Euhalothece natronophila	577489	S	34	26	60	0.00001
Nostoc sp. UHCC 0302	3134896	S	1271	1645	2916	0.00063
Nostoc sp. C057	2576903	S	155	5596	5751	0.00125
Nostoc sp. NIES-3756	1751286	S	65	63	128	0.00003
Nostoc sp. PCC 7524	28072	S	41	40	81	0.00002
Nostoc sp. PCC 7120 = FACHB-418	103690	S	36	64	100	0.00002
Cylindrospermum stagnale	142864	S	814	533	1347	0.00029
Richelia sinica	1357545	S	205	206	411	0.00009
Anabaena sp. WA102	1647413	S	72	4112	4184	0.00091
Okeanomitos corallinicola	3231550	S	3617	3666	7283	0.00158
Nodularia sphaerocarpa	137816	S	155	940	1095	0.00024
Dolichospermum compactum	136073	S	132	1758	1890	0.00041
Anabaenopsis elenkinii	156213	S	45	43	88	0.00002
Brasilonema sennae	1397703	S	747	382	1129	0.00024
Fischerella sp. NIES-3754	1752063	S	490	2816	3306	0.00072
Calothrix sp. NIES-3974	2005462	S	205	78	283	0.00006
Calothrix sp. PCC 6303	1170562	S	50	17	67	0.00001
Tolypothrix sp. PCC 7910	2099387	S	68	66	134	0.00003
Rivularia sp. PCC 7116	373994	S	50	10	60	0.00001
Prochlorococcus marinus	1219	S	10279	7328	17607	0.00382
Prochlorococcus sp. MIT 1223	3096217	S	120	3656	3776	0.00082
Synechococcus sp. Minos11	221341	S	1842	1406	3248	0.00070
Synechococcus sp. PCC 7502	1173263	S	163	77	240	0.00005
Synechococcus sp. JA-2-3B'a(2-13)	321332	S	48	116	164	0.00004
Synechococcus elongatus	32046	S	33	36	69	0.00001
Dactylococcopsis salina	292566	S	44	134	178	0.00004
Stanieria cyanosphaera	102116	S	7343	4203	11546	0.00250
Pleurocapsa sp. FMAR1	3040204	S	315	86	401	0.00009
Pseudanabaena sp. Chao 1811	2963092	S	153	1086	1239	0.00027
Pseudanabaena galeata	1112103	S	96	387	483	0.00010
Pseudanabaena mucicola	71190	S	79	648	727	0.00016
Leptothermofonsia sichuanensis	2917832	S	78	124	202	0.00004
Leptolyngbya sp. 7M	2812896	S	34	5	39	0.00001
Kovacikia minuta	2931930	S	42	27	69	0.00001
Trichothermofontia sichuanensis	3045816	S	64	45	109	0.00002
Anthocerotibacter panamensis	2857077	S	109	7	116	0.00003
Gloeobacter kilaueensis	1416614	S	54	2	56	0.00001
Gloeobacter violaceus	33072	S	34	11	45	0.00001
Chamaesiphon minutus	1173032	S	49	20	69	0.00001
Gloeomargarita lithophora	1188228	S	44	8	52	0.00001
cyanobacterium endosymbiont of Rhopalodia gibberula	1763363	S	744	357	1101	0.00024
Candidatus Phytoplasma mali	37692	S	3918	306	4224	0.00092
Candidatus Phytoplasma rubi	399025	S	1382	74	1456	0.00032
Spiroplasma diminutum	216936	S	50	26	76	0.00002
Spiroplasma helicoides	216938	S	37	14	51	0.00001
Mycoplasma capricolum	2095	S	42	13	55	0.00001
Mycoplasmopsis arginini	2094	S	46	172	218	0.00005
Mycoplasmopsis californica	2113	S	36	119	155	0.00003
Mesomycoplasma ovipneumoniae	29562	S	53	18	71	0.00002
Metamycoplasma canadense	29554	S	35	151	186	0.00004
Candidatus Promineifilum breve	1806508	S	40	0	40	0.00001
Thermomicrobium roseum	500	S	38	0	38	0.00001
Stenotrophomonas maltophilia	40324	S	658172	58873	717045	0.15556
Stenotrophomonas sp. FSL W7-1447	2954546	S	59	34	93	0.00002
Stenotrophomonas rhizophila	216778	S	59	0	59	0.00001
Xanthomonas albilineans	29447	S	100701	845	101546	0.02203
Xanthomonas campestris	339	S	412	240	652	0.00014
Xanthomonas citri	346	S	109	5	114	0.00002
Xanthomonas euvesicatoria	456327	S	91	2381	2472	0.00054
Xanthomonas rydalmerensis	3046274	S	50	0	50	0.00001
Xanthomonas fragariae	48664	S	36	0	36	0.00001
Frateuria soli	1542730	S	54	1	55	0.00001
Dyella sp. BiH032	3075430	S	42	2	44	0.00001
Dokdonella koreensis	323415	S	43	0	43	0.00001
Klebsiella pneumoniae	573	S	130464	271218	401682	0.08714
Candidatus Annandia pinicola	1345117	S	637	15	652	0.00014
Enterobacter sp. T2	2707174	S	704	1561	2265	0.00049
Citrobacter sp. RHB25-C09	2742624	S	102	7	109	0.00002
Citrobacter freundii	546	S	39	59	98	0.00002
Escherichia coli	562	S	108	363	471	0.00010
Salmonella enterica	28901	S	98	2434	2532	0.00055
Cedecea neteri	158822	S	97	4	101	0.00002
Shigella flexneri	623	S	32	178	210	0.00005
Buchnera aphidicola	9	S	299	25	324	0.00007
Pantoea alhagi	1891675	S	54	1663	1717	0.00037
Pantoea agglomerans	549	S	45	306	351	0.00008
Candidatus Erwinia haradaeae	1922217	S	61	3	64	0.00001
Serratia symbiotica	138074	S	66	1	67	0.00001
Serratia marcescens	615	S	48	138	186	0.00004
Serratia sp. UGAL515B_01	2986763	S	40	1	41	0.00001
Yersinia enterocolitica	630	S	95	46	141	0.00003
Rouxiella chamberiensis	1513468	S	126	3	129	0.00003
Proteus vulgaris	585	S	143	40	183	0.00004
Proteus mirabilis	584	S	33	7	40	0.00001
Dickeya zeae	204042	S	106	22	128	0.00003
Edwardsiella tarda	636	S	69	33	102	0.00002
Sodalis ligni	2697027	S	38	0	38	0.00001
Halomonas sp. JS92-SW72	2306583	S	99472	1925	101397	0.02200
Candidatus Portiera aleyrodidarum	91844	S	790	10	800	0.00017
Salinicola lusitanus	1949085	S	41	1	42	0.00001
Salinicola endophyticus	1949083	S	36	1	37	0.00001
Marinobacterium sediminicola	518898	S	54	0	54	0.00001
Acinetobacter baumannii	470	S	49092	31475	80567	0.01748
Acinetobacter calcoaceticus	471	S	35	0	35	0.00001
Acinetobacter lanii	2715163	S	63	2	65	0.00001
Moraxella sp. ZY210820	2904123	S	34	11	45	0.00001
Marinobacter nanhaiticus	1305740	S	12537	55	12592	0.00273
Pseudomonas sp. CIP-10	2892442	S	1455	2041	3496	0.00076
Pseudomonas sp. ZY71	3115647	S	694	283	977	0.00021
Pseudomonas sp. 7SR1	1881017	S	46	0	46	0.00001
Pseudomonas sp. B11D7D	2735906	S	42	0	42	0.00001
Pseudomonas rhodesiae	76760	S	88	3	91	0.00002
Pseudomonas azotoformans	47878	S	44	7	51	0.00001
Pseudomonas tolaasii	29442	S	38	0	38	0.00001
Pseudomonas fluorescens	294	S	33	1	34	0.00001
Pseudomonas alcaligenes	43263	S	88	6	94	0.00002
Pseudomonas aeruginosa	287	S	83	29	112	0.00002
Pseudomonas mendocina	300	S	57	1	58	0.00001
Pseudomonas putida	303	S	92	24	116	0.00003
Pseudomonas monteilii	76759	S	49	68	117	0.00003
Pseudomonas piscis	2614538	S	52	2	54	0.00001
Pseudomonas chlororaphis	587753	S	48	83	131	0.00003
Pseudomonas arsenicoxydans	702115	S	56	0	56	0.00001
Pseudomonas hamedanensis	2745504	S	54	0	54	0.00001
Pseudomonas maumuensis	2842354	S	53	1	54	0.00001
Pseudomonas reinekei	395598	S	38	0	38	0.00001
Denitrificimonas caeni	521720	S	1608	175	1783	0.00039
Halopseudomonas xinjiangensis	487184	S	35	4	39	0.00001
Azotobacter chroococcum	353	S	56	4	60	0.00001
Mannheimia haemolytica	75985	S	3334	1497	4831	0.00105
Mannheimia pernigra	111844	S	34	402	436	0.00009
Histophilus somni	731	S	223	14	237	0.00005
Haemophilus parainfluenzae	729	S	56	5	61	0.00001
Idiomarina loihiensis	135577	S	88	2065	2153	0.00047
Pseudoalteromonas spongiae	298657	S	708	31	739	0.00016
Shewanella glacialimarina	2590884	S	32	170	202	0.00004
Colwellia sp. 20A7	2689569	S	48	0	48	0.00001
Coxiella endosymbiont of Amblyomma sculptum	2487929	S	2182	7	2189	0.00047
Legionella pneumophila	446	S	99	3	102	0.00002
Legionella antarctica	2708020	S	59	0	59	0.00001
Legionella longbeachae	450	S	51	1	52	0.00001
Vibrio vulnificus	672	S	170	33	203	0.00004
Vibrio harveyi	669	S	51	282	333	0.00007
Vibrio parahaemolyticus	670	S	32	16	48	0.00001
Vibrio anguillarum	55601	S	110	464	574	0.00012
Francisella sp. LA112445	1395624	S	594	18	612	0.00013
Methylophaga nitratireducenticrescens	754476	S	75	4	79	0.00002
Candidatus Nitrosacidococcus sp. I8	2942908	S	303	1	304	0.00007
Thiorhodovibrio winogradskyi	77007	S	33	1	34	0.00001
Wenzhouxiangella sp. AB-CW3	2771012	S	122	0	122	0.00003
Candidatus Thiodiazotropha sp. CDECU1	3065865	S	41	0	41	0.00001
Aeromonas schubertii	652	S	119	52	171	0.00004
uncultured Tolumonas sp.	263765	S	127	7	134	0.00003
Candidatus Palibaumannia cicadellinicola	186490	S	91	0	91	0.00002
Methylomonas sp. AM2-LC	3153301	S	36	0	36	0.00001
Methylomonas koyamae	702114	S	36	2	38	0.00001
Woeseia oceani	1548547	S	94	0	94	0.00002
Gilliamella apis	1970738	S	42	4	46	0.00001
Thiohalobacter sp. COW1	2795687	S	60	0	60	0.00001
Kangiella profundi	1561924	S	52	1	53	0.00001
Hydrogenophaga sp. NH-16	2184519	S	57596	2380	59976	0.01301
Hydrogenophaga sp. PBL-H3	434010	S	42	3	45	0.00001
Paracidovorax avenae	80867	S	22130	461	22591	0.00490
Comamonas aquatica	225991	S	857	134	991	0.00021
Variovorax paradoxus	34073	S	72	8	80	0.00002
Rhodoferax antarcticus	81479	S	103	2	105	0.00002
Diaphorobacter sp. HDW4B	2714925	S	108	1	109	0.00002
Polaromonas vacuolata	37448	S	75	8	83	0.00002
Cupriavidus taiwanensis	164546	S	13504	380	13884	0.00301
Cupriavidus pauculus	82633	S	103	4	107	0.00002
Burkholderia multivorans	87883	S	129	48	177	0.00004
Burkholderia arboris	488730	S	46	4	50	0.00001
Burkholderia vietnamiensis	60552	S	42	44	86	0.00002
Burkholderia pseudomallei	28450	S	36	29	65	0.00001
Paraburkholderia terricola	169427	S	286	54	340	0.00007
Trinickia caryophylli	28094	S	44	0	44	0.00001
Trinickia violacea	2571746	S	32	0	32	0.00001
Pandoraea sputorum	93222	S	36	2	38	0.00001
Bordetella hinzii	103855	S	94	2138	2232	0.00048
Pollutimonas thiosulfatoxidans	2028345	S	216	15	231	0.00005
Achromobacter insolitus	217204	S	55	16	71	0.00002
Achromobacter xylosoxidans	85698	S	36	49	85	0.00002
Alcaligenes faecalis	511	S	173	20	193	0.00004
Taylorella equigenitalis	29575	S	125	30	155	0.00003
Massilia forsythiae	2728020	S	67	7	74	0.00002
Herbaspirillum frisingense	92645	S	80	12	92	0.00002
Herbaspirillum sp. meg3	2025949	S	37	0	37	0.00001
Candidatus Ichthyocystis hellenicum	1561003	S	254	0	254	0.00006
Xylophilus rhododendri	2697032	S	85	1	86	0.00002
Thiomonas sp. X19	1050370	S	34	0	34	0.00001
Roseateles sp. DAIF2	2714952	S	62	1	63	0.00001
Piscinibacter gummiphilus	946333	S	43	1	44	0.00001
Dechloromonas sp. HYN0024	2231055	S	268	1	269	0.00006
Ferribacterium limneticum	76259	S	73	0	73	0.00002
Chromobacterium vaccinii	1108595	S	73	11	84	0.00002
Methylophilus medardicus	2588534	S	86	0	86	0.00002
Sulfuriferula plumbiphila	171865	S	94	0	94	0.00002
Candidatus Kinetoplastibacterium sorsogonicusi	1576550	S	66	1	67	0.00001
Rhizobium sp. BT-175	2986929	S	428	414	842	0.00018
Rhizobium sp. NLR16a	2731112	S	145	16	161	0.00003
Rhizobium sp. CB3090	3039156	S	130	13	143	0.00003
Rhizobium rosettiformans	1368430	S	240	196	436	0.00009
Rhizobium jaguaris	1312183	S	40	3	43	0.00001
Agrobacterium tumefaciens	358	S	534	542	1076	0.00023
Agrobacterium vitis	373	S	57	138	195	0.00004
Candidatus Liberibacter africanus	34020	S	1211	63	1274	0.00028
Mesorhizobium terrae	2725666	S	2291	591	2882	0.00063
Mesorhizobium sp. 8	2584466	S	74	15	89	0.00002
Mesorhizobium sp. NZP2298	2483403	S	61	37	98	0.00002
Mesorhizobium sp. INR15	2654248	S	41	4	45	0.00001
Mesorhizobium opportunistum	593909	S	44	20	64	0.00001
Nitratireductor sp. OM-1	1756988	S	44	7	51	0.00001
Bradyrhizobium sp. CCBAU 53421	1325120	S	118	95	213	0.00005
Bradyrhizobium canariense	255045	S	255	16	271	0.00006
Bradyrhizobium barranii	2992140	S	82	338	420	0.00009
Bradyrhizobium elkanii	29448	S	37	68	105	0.00002
Rhodopseudomonas palustris	1076	S	118	28	146	0.00003
Methylobacterium aquaticum	270351	S	83	31	114	0.00002
Methylobacterium tardum	374432	S	59	20	79	0.00002
Methylobacterium currus	2051553	S	43	23	66	0.00001
Methylorubrum populi	223967	S	51	72	123	0.00003
Microvirga lotononidis	864069	S	42	9	51	0.00001
Xanthobacter autotrophicus	280	S	72	20	92	0.00002
Azorhizobium caulinodans	7	S	69	23	92	0.00002
Labrys sp. KNU-23	2789216	S	67	8	75	0.00002
uncultured Cohaesibacter sp.	1002546	S	275	27	302	0.00007
Roseibium sp. Sym1	3016006	S	42	18	60	0.00001
Breoghania sp. L-A4	2304600	S	44	10	54	0.00001
Devosia lacusdianchii	2917991	S	36	2	38	0.00001
Bartonella krasnovii	2267275	S	44	5	49	0.00001
Aureimonas sp. SA4125	2826993	S	59	11	70	0.00002
Methylocystis sp. SC2	187303	S	43	4	47	0.00001
Methylocystis heyeri	391905	S	42	5	47	0.00001
Enhydrobacter sp.	1894999	S	76	14	90	0.00002
Bosea vestrisii	151416	S	47	10	57	0.00001
Oricola thermophila	2742145	S	49	8	57	0.00001
Phreatobacter aquaticus	2570229	S	36	6	42	0.00001
Candidatus Tisiphia endosymbiont of Ptychoptera albimana	3066260	S	52	2807	2859	0.00062
Rickettsia asembonensis	1068590	S	233	157	390	0.00008
Rickettsia endosymbiont of Oedothorax gibbosus	931099	S	102	37	139	0.00003
Candidatus Megaera polyxenophila	988779	S	35	10	45	0.00001
Wolbachia endosymbiont of Dipetalonema caudispina	1812112	S	58	2	60	0.00001
Wolbachia endosymbiont (group A) of Myopa testacea	3066148	S	32	103	135	0.00003
Neoehrlichia mikurensis	89586	S	32	2	34	0.00001
Sphingobium sp. JS3065	2970925	S	745	357	1102	0.00024
Sphingobium sp. RAC03	1843368	S	37	3	40	0.00001
Sphingomonas sp. FARSPH	2219696	S	81	98	179	0.00004
Sphingomonas sp. S2-65	2903960	S	36	10	46	0.00001
Sphingomonas ginsengisoli An et al. 2013	363835	S	62	14	76	0.00002
Sphingomonas suaedae	2599297	S	33	5	38	0.00001
Novosphingobium capsulatum	13688	S	88	43	131	0.00003
Hankyongella ginsenosidimutans	1763828	S	46	17	63	0.00001
Sphingosinicella sp. BN140058	1892855	S	529	48	577	0.00013
Polymorphobacter sp. PAMC 29334	2862331	S	72	7	79	0.00002
Alteriqipengyuania flavescens	3053610	S	34	60	94	0.00002
Celeribacter marinus	1397108	S	1249	111	1360	0.00030
Roseovarius indicus	540747	S	58	35	93	0.00002
Roseivivax marinus	1379903	S	84	19	103	0.00002
Octadecabacter antarcticus	1217908	S	62	3	65	0.00001
Sagittula sp. MA-2	3048007	S	40	42	82	0.00002
Yoonia sp. BS5-3	3137369	S	273	19	292	0.00006
Cereibacter sphaeroides	1063	S	107	44	151	0.00003
Tabrizicola piscis	2494374	S	51	6	57	0.00001
Roseococcus microcysteis	2771361	S	535	104	639	0.00014
Komagataeibacter rhaeticus	215221	S	48	14	62	0.00001
Stella humosa	94	S	499	114	613	0.00013
Thalassobaculum sp. OXR-137	3100173	S	131	73	204	0.00004
Nisaea acidiphila	1862145	S	63	12	75	0.00002
Candidatus Endolissoclinum faulkneri	1263979	S	49	1	50	0.00001
Candidatus Bealeia paramacronuclearis	1921001	S	94	3	97	0.00002
Candidatus Pelagibacter giovannonii	2563896	S	130	4	134	0.00003
Candidatus Pelagibacter sp. RS40	1977865	S	39	1	40	0.00001
Candidatus Pelagibacter sp. HIMB1321	1388755	S	36	1	37	0.00001
Kordiimonas sp. SCSIO 12610	2829597	S	105	6	111	0.00002
Pseudemcibacter aquimaris	2857064	S	35	2	37	0.00001
Mariprofundus aestuarium	1921086	S	750	2	752	0.00016
Acidithiobacillus caldus	33059	S	97	3	100	0.00002
Acidithiobacillus ferrivorans	160808	S	91	7	98	0.00002
Algibacter luteus	1178825	S	3285	1866	5151	0.00112
Flavobacterium sp. SLB02	2665645	S	44	108	152	0.00003
Flavobacterium fluviale	2249356	S	92	93	185	0.00004
Flavobacterium limnophilum	3003262	S	46	21	67	0.00001
uncultured Flavobacterium sp.	165435	S	34	18	52	0.00001
Flavobacterium endoglycinae	2816357	S	34	17	51	0.00001
Zunongwangia sp. SCSIO 43204	2779359	S	561	1240	1801	0.00039
Polaribacter haliotis	1888915	S	57	59	116	0.00003
Polaribacter gangjinensis	574710	S	32	26	58	0.00001
Seonamhaeicola sp. ML3	2937786	S	110	26	136	0.00003
Maribacter sp. BPC-D8	3053613	S	37	14	51	0.00001
Christiangramia echinicola	279359	S	34	9	43	0.00001
Blattabacterium cuenoti	1653831	S	3262	666	3928	0.00085
Chryseobacterium sp. Y16C	2920939	S	72	354	426	0.00009
Chryseobacterium sp. Chry.R1	3139392	S	43	13	56	0.00001
Chryseobacterium piperi	558152	S	79	14	93	0.00002
Chryseobacterium indologenes	253	S	48	206	254	0.00006
Chryseobacterium indoltheticum	254	S	36	16	52	0.00001
Chryseobacterium gambrini	373672	S	34	46	80	0.00002
Candidatus Karelsulcia muelleri	336810	S	62	19	81	0.00002
uncultured Acetobacteroides sp.	1760811	S	6340	254	6594	0.00143
Paraprevotella xylaniphila	454155	S	119	1351	1470	0.00032
Porphyromonas sp. oral taxon 275	712435	S	100	64	164	0.00004
uncultured Draconibacterium sp.	1573823	S	112	6	118	0.00003
Pontibacter sp. G13	3074898	S	169	10	179	0.00004
Pontibacter kalidii	2592049	S	56	5	61	0.00001
Chryseolinea soli	2321403	S	254	15	269	0.00006
Spirosoma pollinicola	2057025	S	117	5	122	0.00003
Fulvitalea axinellae	1182444	S	85	5	90	0.00002
Runella sp. SP2	2268026	S	56	7	63	0.00001
Roseivirga spongicola	333140	S	39	12	51	0.00001
Sphingobacterium hotanense	649196	S	100	344	444	0.00010
Mucilaginibacter sp. KACC 22063	3025666	S	83	26	109	0.00002
Chitinophaga caseinilytica	2267521	S	350	61	411	0.00009
Chitinophaga sp. XS-30	2604421	S	50	3	53	0.00001
Chitinophaga oryzae	2725414	S	35	5	40	0.00001
Ferruginibacter lapsinanis	563172	S	36	2	38	0.00001
Gemmatirosa kalamazoonensis	861299	S	42	0	42	0.00001
Helicobacter pylori	210	S	11195	121	11316	0.00245
Helicobacter cholecystus	45498	S	76	1	77	0.00002
Helicobacter heilmannii	35817	S	75	18	93	0.00002
Campylobacter lari	201	S	778	90	868	0.00019
Campylobacter geochelonis	1780362	S	40	0	40	0.00001
Arcobacter suis	1278212	S	38	32	70	0.00002
Aliarcobacter butzleri	28197	S	32	23	55	0.00001
Halarcobacter sp.	2321133	S	43	4	47	0.00001
Sulfurimonas sp.	2022749	S	32	7	39	0.00001
Sulfurimonas paralvinellae	317658	S	39	13	52	0.00001
Candidatus Neptunochlamydia sp. REUL1	3064277	S	195	10	205	0.00004
Candidatus Protochlamydia amoebophila	362787	S	36	0	36	0.00001
Aeoliella mucimassa	2527972	S	359	1	360	0.00008
Lacipirellula parvula	2650471	S	102	2	104	0.00002
Thermogutta terrifontis	1331910	S	37	0	37	0.00001
Aquisphaera giovannonii	406548	S	150	44	194	0.00004
Paludisphaera borealis	1387353	S	51	8	59	0.00001
Caulifigura coniformis	2527983	S	66	6	72	0.00002
Sedimentisphaera salicampi	1941349	S	255	0	255	0.00006
Verrucomicrobium sp. GAS474	1882831	S	195	7	202	0.00004
Sorangium cellulosum	56	S	1678	22	1700	0.00037
Sandaracinus amylolyticus	927083	S	34	0	34	0.00001
Nannocystis poenicansa	2995304	S	38	0	38	0.00001
Myxococcus stipitatus	83455	S	184	23	207	0.00004
Corallococcus macrosporus	35	S	146	14	160	0.00003
Corallococcus coralloides	184914	S	64	8	72	0.00002
Pyxidicoccus parkwaysis	2813578	S	33	0	33	0.00001
Anaeromyxobacter sp. Fw109-5	404589	S	69	2	71	0.00002
Anaeromyxobacter paludicola	2918171	S	38	1	39	0.00001
Archangium violaceum	83451	S	36	1	37	0.00001
Stigmatella aurantiaca	41	S	35	0	35	0.00001
Desulfonema magnum	45655	S	155	0	155	0.00003
Desulfonema limicola	45656	S	117	0	117	0.00003
Thermodesulfobacterium sp. TA1	2234087	S	163	0	163	0.00004
Thermosulfurimonas marina	2047767	S	109	0	109	0.00002
Oceanidesulfovibrio marinus	370038	S	48	1	49	0.00001
Megalodesulfovibrio gigas	879	S	33	0	33	0.00001
Citrifermentans bemidjiense	225194	S	51	0	51	0.00001
Syntrophobacter fumaroxidans	119484	S	66	1	67	0.00001
Desulfarculus baarsii	453230	S	51	1	52	0.00001
Oceanispirochaeta crateris	2518645	S	183	2	185	0.00004
Treponema denticola	158	S	45	7	52	0.00001
Treponema saccharophilum	165	S	34	0	34	0.00001
uncultured Sphaerochaeta sp.	886478	S	138	9	147	0.00003
Brachyspira pilosicoli	52584	S	55	2	57	0.00001
Fusobacterium pseudoperiodonticum	2663009	S	59	29	88	0.00002
Fusobacterium animalis	76859	S	43	119	162	0.00004
Fusobacterium polymorphum	76857	S	32	211	243	0.00005
uncultured Ilyobacter sp.	544433	S	77	11	88	0.00002
Cetobacterium somerae	188913	S	43	1	44	0.00001
Mesoterricola sediminis	2927980	S	37	441	478	0.00010
Sulfidibacter corallicola	2818388	S	152	1	153	0.00003
Edaphobacter sp. 12200R-103	2703788	S	32	9	41	0.00001
Thermosipho ferrireducens	2571116	S	52	27	79	0.00002
Marinitoga aeolica	2809031	S	63	11	74	0.00002
Silvanigrella aquatica	1915309	S	69	1	70	0.00002
Aquifex aeolicus	63363	S	48	0	48	0.00001
Haloarcula sp. SYNS111	3033392	S	59	22	81	0.00002
Halobaculum salinum	2743089	S	64	1	65	0.00001
Salarchaeum japonicum	555573	S	56	3	59	0.00001
Methanobacterium alkalithermotolerans	2731220	S	42	2	44	0.00001
Methanobrevibacter sp. YE315	1609968	S	42	14	56	0.00001
Stygiolobus caldivivus	2824673	S	71	7	78	0.00002
Thermofilum adornatum	1365176	S	44	24	68	0.00001
Menderavirus mendera	2846389	S	6168	0	6168	0.00134
Nerrivikvirus srim2	2734125	S	1330	0	1330	0.00029
Haifavirus tim68	2955972	S	115	0	115	0.00002
Clawzvirus clawz	3059892	S	161	0	161	0.00003
Colossusvirus colossus	2734194	S	64	0	64	0.00001
Kungbxnavirus pT24	2846436	S	56	0	56	0.00001
Chlorovirus heliozoae	322019	S	75	0	75	0.00002
Feravirus neuropterus	3052204	S	68	0	68	0.00001
Sida golden mottle virus	759390	S	174	0	174	0.00004
Alphabaculovirus sujujubae	3048345	S	65	0	65	0.00001
Alphabaculovirus chorosaceanae	3047752	S	44	1	45	0.00001
Acanthamoeba castellanii medusavirus	2080449	S	56	0	56	0.00001
Bracoviriform facetosae	2083300	S	76	1	77	0.00002