name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Streptomyces sp. NBC_00388	2975735	S	174	95	269	0.00220
Streptomyces sp. DSM 40868	2721173	S	83	67	150	0.00123
Streptomyces sp. NBC_01477	2976015	S	73	48	121	0.00099
Streptomyces sp. DSS69	3113369	S	71	594	665	0.00545
Streptomyces sp. WAC00303	2933779	S	68	528	596	0.00488
Streptomyces sp. NBC_00455	2903654	S	54	42	96	0.00079
Streptomyces sp. NBC_00257	2975692	S	50	1075	1125	0.00922
Streptomyces sp. NBC_01353	2903835	S	50	32	82	0.00067
Streptomyces sp. SS7	3108485	S	49	35	84	0.00069
Streptomyces sp. NBC_00525	2903660	S	47	39	86	0.00070
Streptomyces sp. NBC_01233	2903787	S	47	38	85	0.00070
Streptomyces sp. SM18	1736046	S	46	28	74	0.00061
Streptomyces sp. T12	477697	S	45	33	78	0.00064
Streptomyces sp. INR7	2607753	S	39	599	638	0.00523
Streptomyces sp. 891-h	2720714	S	34	13	47	0.00039
Streptomyces sp. NBC_00344	2975720	S	34	13	47	0.00039
Streptomyces buecherae	2763006	S	97	81	178	0.00146
Streptomyces marincola	2878388	S	87	39	126	0.00103
Streptomyces hundungensis	1077946	S	65	42	107	0.00088
Streptomyces noursei	1971	S	63	80	143	0.00117
Streptomyces anulatus	1892	S	36	92	128	0.00105
Streptomyces griseorubiginosus	67304	S	52	43	95	0.00078
Streptomyces venezuelae	54571	S	48	44	92	0.00075
Streptomyces nigra	1827580	S	45	37	82	0.00067
Streptomyces griseoviridis	45398	S	37	24	61	0.00050
Streptomyces acidiscabies	42234	S	36	21	57	0.00047
Streptomyces brevispora	887462	S	35	27	62	0.00051
Streptomyces cynarae	2981134	S	32	18	50	0.00041
Peterkaempfera bronchialis	2126346	S	248	213	461	0.00378
Kitasatospora sp. NBC_01246	2903570	S	36	51	87	0.00071
Mycobacterium canetti	78331	S	1051	670	1721	0.01410
Mycobacterium leprae	1769	S	111	2	113	0.00093
Mycobacterium shinjukuense	398694	S	32	3	35	0.00029
Mycolicibacterium litorale	758802	S	517	230	747	0.00612
Rhodococcus koreensis	99653	S	206	116	322	0.00264
Nocardia gipuzkoensis	2749991	S	55	30	85	0.00070
Nocardia brasiliensis	37326	S	43	43	86	0.00070
Prescottella soli	1543852	S	35	25	60	0.00049
Corynebacterium freneyi	134034	S	110	82	192	0.00157
Corynebacterium cyclohexanicum	322009	S	41	38	79	0.00065
Gordonia jinghuaiqii	2758710	S	37	43	80	0.00066
Hoyosella subflava	639313	S	46	4	50	0.00041
Microbacterium sp. LWH11-1.2	3135258	S	258	214	472	0.00387
Microbacterium sp. No. 7	1714373	S	43	56	99	0.00081
Agromyces protaetiae	2509455	S	42	21	63	0.00052
Gryllotalpicola protaetiae	2419771	S	63	26	89	0.00073
Cellulomonas gilvus	11	S	60	61	121	0.00099
Pseudactinotalea sp. HY158	2654547	S	43	11	54	0.00044
Phycicoccus endophyticus	1690220	S	48	27	75	0.00061
Pedococcus dokdonensis	443156	S	41	23	64	0.00052
Brevibacterium oceani	358099	S	36	17	53	0.00043
Nocardioides marmotae	2663857	S	1694	1362	3056	0.02504
Nocardioides daphniae	402297	S	70	52	122	0.00100
Microlunatus sp. Gsoil 973	2672569	S	44	3	47	0.00039
Acidipropionibacterium acidipropionici	1748	S	54	68	122	0.00100
Actinopolymorpha singaporensis	117157	S	73	17	90	0.00074
Amycolatopsis cynarae	2995223	S	271	144	415	0.00340
Amycolatopsis albispora	1804986	S	34	54	88	0.00072
Lentzea sp. NBC_00516	2903582	S	47	17	64	0.00052
Saccharothrix espanaensis	103731	S	34	17	51	0.00042
Kutzneria chonburiensis	1483604	S	32	13	45	0.00037
Verrucosispora sp. WMMD573	3015149	S	32	60	92	0.00075
Micromonospora purpureochromogenes	47872	S	44	140	184	0.00151
Actinoplanes teichomyceticus	1867	S	41	40	81	0.00066
Catellatospora sp. IY07-71	2728827	S	37	28	65	0.00053
Actinoallomurus sp. NBC_01490	2903557	S	33	15	48	0.00039
Streptomonospora litoralis	2498135	S	40	15	55	0.00045
Nanchangia anserum	2692125	S	41	11	52	0.00043
Blastococcus sp. HT6-4	3144973	S	33	26	59	0.00048
Catenulispora acidiphila	304895	S	61	23	84	0.00069
Jatrophihabitans telluris	2038343	S	32	5	37	0.00030
Kineococcus sp. NBC_00420	2903564	S	32	15	47	0.00039
Baekduia soli	496014	S	104	28	132	0.00108
Capillimicrobium parvum	2884022	S	45	11	56	0.00046
Thermoleophilum album	29539	S	35	2	37	0.00030
Bacillus thuringiensis	1428	S	42	399	441	0.00361
Paenibacillus sp. RUD330	2023772	S	194	51	245	0.00201
Paenibacillus mucilaginosus	61624	S	67	21	88	0.00072
Paenibacillus stellifer	169760	S	41	11	52	0.00043
Paenibacillus albicereus	2726185	S	35	17	52	0.00043
Staphylococcus aureus	1280	S	232	2535	2767	0.02268
Staphylococcus simulans	1286	S	82	21	103	0.00084
Staphylococcus cohnii	29382	S	56	24	80	0.00066
Staphylococcus muscae	1294	S	32	9	41	0.00034
Laceyella sacchari	37482	S	214	22	236	0.00193
Thermoactinomyces vulgaris	2026	S	97	11	108	0.00089
Streptococcus pneumoniae	1313	S	925	737	1662	0.01362
Streptococcus halotolerans	1814128	S	71	12	83	0.00068
Lactococcus garvieae	1363	S	41	23	64	0.00052
Carnobacterium maltaromaticum	2751	S	32	9	41	0.00034
Clostridium sp. JS66	3064705	S	292	41	333	0.00273
Clostridium sp. MB40-C1	3070996	S	59	3	62	0.00051
Clostridium pasteurianum	1501	S	358	12	370	0.00303
Clostridium perfringens	1502	S	74	143	217	0.00178
Clostridium botulinum	1491	S	66	16	82	0.00067
Clostridium tetani	1513	S	35	9	44	0.00036
Faecalibacterium prausnitzii	853	S	55	69	124	0.00102
Ruminiclostridium herbifermentans	2488810	S	80	16	96	0.00079
Dysosmobacter welbionis	2093857	S	55	79	134	0.00110
Flavonifractor plautii	292800	S	41	10	51	0.00042
Lawsonibacter asaccharolyticus	2108523	S	33	5	38	0.00031
Agathobacter rectalis	39491	S	71	50	121	0.00099
Enterocloster bolteae	208479	S	51	12	63	0.00052
Chroococcidiopsis thermalis	54299	S	236	25	261	0.00214
Nostoc sp. MS1	2764711	S	62	11	73	0.00060
Nostoc sp. C052	2576902	S	48	12	60	0.00049
Oscillatoria acuminata	118323	S	88	1	89	0.00073
Moorena producens	1155739	S	44	0	44	0.00036
Leptothermofonsia sichuanensis	2917832	S	42	2	44	0.00036
Spiroplasma taiwanense	2145	S	37	25	62	0.00051
Deinococcus taeanensis	2737050	S	61	18	79	0.00065
Marinithermus hydrothermalis	186192	S	64	4	68	0.00056
Candidatus Chlorohelix allophototropha	3003348	S	45	2	47	0.00039
Klebsiella grimontii	2058152	S	174	662	836	0.00685
Klebsiella pneumoniae	573	S	59	2021	2080	0.01705
Escherichia coli	562	S	291	27981	28272	0.23170
Salmonella enterica	28901	S	42	894	936	0.00767
Yersinia enterocolitica	630	S	279	46	325	0.00266
Serratia sp. UGAL515B_01	2986763	S	73	14	87	0.00071
Serratia liquefaciens	614	S	62	40	102	0.00084
Buchnera aphidicola	9	S	71	3	74	0.00061
Morganella morganii	582	S	42	10	52	0.00043
Edwardsiella piscicida	1263550	S	140	42	182	0.00149
Paraglaciecola sp. L1A13	2686359	S	3393	120	3513	0.02879
Shewanella sp. KX20019	2803864	S	37	11	48	0.00039
Pseudoalteromonas piscicida	43662	S	32	30	62	0.00051
Pseudomonas aeruginosa	287	S	66	352	418	0.00343
Pseudomonas putida	303	S	48	197	245	0.00201
Pseudomonas tolaasii	29442	S	33	8	41	0.00034
Pseudomonas entomophila	312306	S	68	12	80	0.00066
Marinobacter nanhaiticus	1305740	S	125	5	130	0.00107
Halomonas sp. CKK8	3036127	S	359	89	448	0.00367
Vreelandella alkaliphila	272774	S	60	15	75	0.00061
Billgrantia tianxiuensis	2497861	S	36	2	38	0.00031
Marinobacterium aestuarii	1821621	S	112	5	117	0.00096
Bacterioplanoides sp. SCSIO 12839	2829569	S	73	2	75	0.00061
Lysobacter capsici	435897	S	175	28	203	0.00166
Lysobacter enzymogenes	69	S	44	16	60	0.00049
Xanthomonas euvesicatoria	456327	S	65	4914	4979	0.04080
Stenotrophomonas maltophilia	40324	S	52	42	94	0.00077
Acinetobacter dispersus	70348	S	95	19	114	0.00093
Acinetobacter johnsonii	40214	S	82	76	158	0.00129
Photobacterium damselae	38293	S	48	16	64	0.00052
Methylocaldum szegediense	73780	S	120	2	122	0.00100
Aeromonas veronii	654	S	45	56	101	0.00083
Acidiferrobacter sp. SPIII_3	1281578	S	33	0	33	0.00027
Sulfurivermis fontis	1972068	S	40	3	43	0.00035
Nitrobacter hamburgensis	912	S	2249	170	2419	0.01982
Bradyrhizobium sp. Ash2021	2954771	S	712	69	781	0.00640
Bradyrhizobium sp. NC92	55395	S	39	82	121	0.00099
Bradyrhizobium brasilense	1419277	S	38	28	66	0.00054
Bradyrhizobium septentrionale	1404411	S	33	32	65	0.00053
Rhizobium sp. CB3090	3039156	S	33	18	51	0.00042
Rhizobium anhuiense	1184720	S	34	38	72	0.00059
Agrobacterium tumefaciens	358	S	43	51	94	0.00077
Neorhizobium sp. NCHU2750	1825976	S	55	34	89	0.00073
Ensifer adhaerens	106592	S	35	9	44	0.00036
Mesorhizobium sp. B2-8-5	2589903	S	234	90	324	0.00266
Mesorhizobium sp. B2-1-8	2589967	S	80	31	111	0.00091
Mesorhizobium terrae	2725666	S	43	14	57	0.00047
Methyloceanibacter caenitepidi	1384459	S	374	22	396	0.00325
Microvirga ossetica	1882682	S	33	4	37	0.00030
Methylovirgula sp. HY1	2822761	S	46	1	47	0.00039
Acuticoccus sp. I52.16.1	2928472	S	35	4	39	0.00032
Sphingomonas abietis	3012344	S	60	31	91	0.00075
Sphingomonas parapaucimobilis	28213	S	35	25	60	0.00049
Falsirhodobacter algicola	2692330	S	87	39	126	0.00103
Gluconobacter thailandicus	257438	S	32	20	52	0.00043
Nguyenibacter sp. L1	3049350	S	33	14	47	0.00039
Cupriavidus taiwanensis	164546	S	1468	227	1695	0.01389
Cupriavidus gilardii	82541	S	144	30	174	0.00143
Cupriavidus campinensis	151783	S	57	7	64	0.00052
Cupriavidus cauae	2608999	S	40	11	51	0.00042
Burkholderia cenocepacia	95486	S	35	62	97	0.00079
Burkholderia stagnalis	1503054	S	35	7	42	0.00034
Burkholderia multivorans	87883	S	33	7	40	0.00033
Burkholderia pseudomallei	28450	S	43	183	226	0.00185
Burkholderia plantarii	41899	S	47	9	56	0.00046
Paraburkholderia pallida	2547399	S	57	25	82	0.00067
Variovorax paradoxus	34073	S	108	69	177	0.00145
Delftia acidovorans	80866	S	116	138	254	0.00208
Rhodoferax koreense	1842727	S	32	12	44	0.00036
Bordetella hinzii	103855	S	49	82	131	0.00107
Thauera aromatica	59405	S	605	167	772	0.00633
Paludibacterium paludis	1225769	S	111	9	120	0.00098
Flavobacterium azooxidireducens	1871076	S	166	96	262	0.00215
Flavobacterium aestivum	3003257	S	43	63	106	0.00087
Chryseobacterium balustinum	246	S	101	51	152	0.00125
Parvicella tangerina	2829795	S	128	8	136	0.00111
Blattabacterium cuenoti	1653831	S	38	14	52	0.00043
Bacteroides uniformis	820	S	41	61	102	0.00084
Bacteroides eggerthii	28111	S	37	22	59	0.00048
Bacteroides ovatus	28116	S	33	78	111	0.00091
Phocaeicola vulgatus	821	S	102	59	161	0.00132
Phocaeicola dorei	357276	S	59	46	105	0.00086
Segatella copri	165179	S	220	26	246	0.00202
uncultured Acetobacteroides sp.	1760811	S	60	2	62	0.00051
uncultured Draconibacterium sp.	1573823	S	70	10	80	0.00066
Algoriphagus sanaruensis	1727163	S	83	17	100	0.00082
Mucilaginibacter mallensis	652787	S	41	26	67	0.00055
Niabella soli	446683	S	55	5	60	0.00049
Gemmatimonas groenlandica	2732249	S	47	0	47	0.00039
Fibrobacter succinogenes	833	S	32	0	32	0.00026
Maridesulfovibrio sp.	2795000	S	121	4	125	0.00102
Megalodesulfovibrio gigas	879	S	113	1	114	0.00093
Desulfofustis limnaeus	2740163	S	191	3	194	0.00159
Desulfonema limicola	45656	S	153	7	160	0.00131
Geomonas sp. RF6	2897342	S	85	9	94	0.00077
Mucisphaera calidilacus	2527982	S	40	1	41	0.00034
Methylacidimicrobium sp. B4	2796139	S	92	0	92	0.00075
Arcobacter ellisii	913109	S	47	22	69	0.00057
Sulfurimonas sp.	2022749	S	67	2	69	0.00057
Sulfurimonas aquatica	2672570	S	43	1	44	0.00036
Sorangium cellulosum	56	S	51	16	67	0.00055
Haliangium ochraceum	80816	S	37	0	37	0.00030
Candidatus Nanosynbacter featherlites	2572088	S	41	24	65	0.00053
Candidatus Nanosynbacter lyticus	2093824	S	37	91	128	0.00105
Candidatus Saccharimonas aalborgensis	1332188	S	87	1	88	0.00072
Candidatus Mycosynbacter amalyticus	2665156	S	66	1	67	0.00055
Fusobacterium nucleatum	851	S	80	34	114	0.00093
Leptospira weilii	28184	S	35	5	40	0.00033
Salinigranum rubrum	755307	S	109	6	115	0.00094
Halobaculum rubrum	2872158	S	33	2	35	0.00029
Halobellus sp. DFY28	3075123	S	33	7	40	0.00033
uncultured Methanolobus sp.	218300	S	92	1	93	0.00076
McMurdo Ice Shelf pond-associated circular DNA virus-1	1521385	S	33411	0	33411	0.27381
Ecklonia radiata-associated virus 5	2480195	S	36	3148	3184	0.02609
Cyclovirus nhanloai	3047966	S	123	0	123	0.00101
Circovirus pigeon	3050342	S	92	0	92	0.00075
Circoviridae 2 LDMD-2013	1379695	S	56	0	56	0.00046
Valinorvirus arda	2956630	S	50	0	50	0.00041
Genomoviridae sp.	2202565	S	191	6	197	0.00161
Gemykibivirus rhina2	2844600	S	59	0	59	0.00048
Gemycircularvirus ptero5	2844512	S	38	0	38	0.00031
Aquambidensovirus asteroid1	2748302	S	196	0	196	0.00161
Aquambidensovirus decapod1	3051977	S	108	0	108	0.00089
uncultured densovirus	748192	S	52	0	52	0.00043
Gokushovirinae Bog1183_53	1655646	S	33	0	33	0.00027
Kenoshavirus ohmyward	2844671	S	38	104	142	0.00116
Tanisvirus tanis	2844677	S	127	62	189	0.00155
Tanisvirus avazak	2844659	S	46	18	64	0.00052
Secretariatvirus secretariat	2844675	S	99	0	99	0.00081
Bingvirus bing	2560785	S	313	0	313	0.00257
Rimavirus drgrey	2560783	S	45	202	247	0.00202
Pariacacavirus 1245O	2956266	S	37	25	62	0.00051
Pepyhexavirus pepy6	1982368	S	116	20	136	0.00111
Pepyhexavirus poco6	1982369	S	67	11	78	0.00064
Coruscantvirus coruscant	3059903	S	119	0	119	0.00098
Bocovirus X14	3059789	S	160	0	160	0.00131
Burrovirus araxxi	2845589	S	69	48	117	0.00096
Moomoovirus moomoo	2956200	S	109	101	210	0.00172
Gordonvirus gordon	1982154	S	60	10	70	0.00057
Akonivirus phedro	2845594	S	66	0	66	0.00054
Stopavirus HTVC011P	2733960	S	39	0	39	0.00032
Caelumvirus issmi	2955567	S	32	0	32	0.00026
Percavirus equidgamma5	3050282	S	262	0	262	0.00215
Orthoflavivirus tembusu	3048360	S	269	0	269	0.00220