name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Streptomyces sp. CGMCC 4.1772	3111774	S	1098	1858	2956	0.02257
Streptomyces sp. WAC00303	2933779	S	143	673	816	0.00623
Streptomyces sp. HP-A2021	2927875	S	113	116	229	0.00175
Streptomyces sp. Z423-1	2730915	S	102	55	157	0.00120
Streptomyces sp. NBC_00316	2975710	S	80	67	147	0.00112
Streptomyces sp. NBC_01450	2903871	S	69	243	312	0.00238
Streptomyces sp. HUAS MG91	3156398	S	58	27	85	0.00065
Streptomyces sp. NBC_00696	2903672	S	57	164	221	0.00169
Streptomyces sp. NBC_01236	2903789	S	52	95	147	0.00112
Streptomyces sp. NBC_00239	2903640	S	51	27	78	0.00060
Streptomyces sp. M92	2944250	S	49	38	87	0.00066
Streptomyces sp. NBC_01198	2903769	S	47	22	69	0.00053
Streptomyces sp. NBC_00669	2976011	S	39	129	168	0.00128
Streptomyces sp. AM 4-1-1	3028710	S	37	16	53	0.00040
Streptomyces sp. T12	477697	S	34	22	56	0.00043
Streptomyces venezuelae	54571	S	727	428	1155	0.00882
Streptomyces canus	58343	S	70	30	100	0.00076
Streptomyces pseudovenezuelae	67350	S	40	21	61	0.00047
Streptomyces anulatus	1892	S	42	64	106	0.00081
Streptomyces niveus	193462	S	102	37	139	0.00106
Streptomyces olivoreticuli	68246	S	89	34	123	0.00094
Streptomyces pluripotens	1355015	S	72	20	92	0.00070
Streptomyces formicae	1616117	S	71	32	103	0.00079
Streptomyces liliifuscus	2797636	S	59	30	89	0.00068
Streptomyces coeruleorubidus	116188	S	54	38	92	0.00070
Streptomyces endophytica	2991496	S	50	53	103	0.00079
Streptomyces clavuligerus	1901	S	44	13	57	0.00044
Streptomyces chartreusis	1969	S	43	32	75	0.00057
Streptomyces noursei	1971	S	39	28	67	0.00051
Streptomyces spectabilis	68270	S	38	15	53	0.00040
Streptomyces capitiformicae	2014920	S	36	8	44	0.00034
Streptomyces jietaisiensis	235987	S	36	145	181	0.00138
Streptomyces glaucescens	1907	S	35	19	54	0.00041
Streptomyces zaomyceticus	68286	S	33	14	47	0.00036
Kitasatospora sp. YST-16	2998080	S	114	132	246	0.00188
Kitasatospora purpeofusca	67352	S	37	38	75	0.00057
Actinacidiphila glaucinigra	235986	S	37	17	54	0.00041
Agromyces mangrovi	1858653	S	1464	375	1839	0.01404
Agromyces larvae	2929802	S	205	47	252	0.00192
Agromyces protaetiae	2509455	S	43	7	50	0.00038
Microbacterium sp. H1-D42	2925844	S	119	46	165	0.00126
Microbacterium sp. ET2	3050384	S	91	81	172	0.00131
Microbacterium sp. LWH13-1.2	3135260	S	37	95	132	0.00101
Microbacterium wangchenii	2541726	S	650	223	873	0.00666
Salinibacterium sp. TMP30	3138237	S	205	16	221	0.00169
Clavibacter michiganensis	28447	S	34	45	79	0.00060
Frigoribacterium sp. SL97	2994664	S	66	12	78	0.00060
Gulosibacter sediminis	1729695	S	35	13	48	0.00037
Kocuria turfanensis	388357	S	1089	353	1442	0.01101
Sinomonas atrocyanea	37927	S	38	14	52	0.00040
Mycobacterium canetti	78331	S	715	586	1301	0.00993
Mycobacterium sp. ITM-2016-00316	2099695	S	87	13	100	0.00076
Mycobacterium sp. Aquia_216	2991729	S	44	3	47	0.00036
Mycobacterium novum	2492438	S	43	78	121	0.00092
Mycolicibacterium confluentis	28047	S	132	59	191	0.00146
Mycolicibacterium sp. TUM20985	3023370	S	40	22	62	0.00047
Mycolicibacterium fallax	1793	S	38	56	94	0.00072
Mycolicibacterium neoaurum	1795	S	38	21	59	0.00045
Mycolicibacterium rhodesiae	36814	S	32	26	58	0.00044
Mycolicibacillus koreensis	1069220	S	632	105	737	0.00563
Mycobacteroides chelonae	1774	S	33	4	37	0.00028
Rhodococcus erythropolis	1833	S	285	360	645	0.00492
Rhodococcus qingshengii	334542	S	109	326	435	0.00332
Rhodococcus sp. P-2	2795031	S	180	46	226	0.00173
Rhodococcus sp. NJ-530	2490853	S	47	552	599	0.00457
Rhodococcus sp. JS3073	3002901	S	39	16	55	0.00042
Rhodococcus globerulus	33008	S	50	6	56	0.00043
Nocardia vinacea	96468	S	503	65	568	0.00434
Nocardia asteroides	1824	S	171	60	231	0.00176
Nocardia cyriacigeorgica	135487	S	63	23	86	0.00066
Nocardia brasiliensis	37326	S	51	25	76	0.00058
Corynebacterium phocae	161895	S	44	100	144	0.00110
Gordonia polyisoprenivorans	84595	S	45	49	94	0.00072
Tsukamurella tyrosinosolvens	57704	S	84	27	111	0.00085
Modestobacter sp. L9-4	2851567	S	2985	1238	4223	0.03224
Geodermatophilus obscurus	1861	S	50	19	69	0.00053
Amycolatopsis sp. AA4	1896961	S	65	88	153	0.00117
Amycolatopsis sp. NBC_00345	2975955	S	38	60	98	0.00075
Amycolatopsis thermalba	944492	S	44	240	284	0.00217
Pseudonocardia sp. EC080625-04	1096868	S	191	842	1033	0.00789
Pseudonocardia sp. HH130630-07	1690815	S	59	16	75	0.00057
Kutzneria albida	43357	S	88	27	115	0.00088
Crossiella sp. CA-258035	2981138	S	72	21	93	0.00071
Micromonospora sp. WMMC415	2675222	S	37	49	86	0.00066
Micromonospora zamorensis	709883	S	361	171	532	0.00406
Micromonospora siamensis	299152	S	119	65	184	0.00140
Micromonospora inositola	47865	S	107	66	173	0.00132
Actinoplanes derwentensis	113562	S	39	44	83	0.00063
Dactylosporangium aurantiacum	35754	S	66	33	99	0.00076
Phytohabitans suffuscus	624315	S	32	8	40	0.00031
Nocardioides sp. NBC_00368	2976000	S	61	14	75	0.00057
Nocardioides sp. W7	2931390	S	50	20	70	0.00053
Nocardioides okcheonensis	2894081	S	119	65	184	0.00140
Nocardioides humi	449461	S	72	27	99	0.00076
Aeromicrobium chenweiae	2079793	S	67	26	93	0.00071
Aeromicrobium sp. HA	3009077	S	49	26	75	0.00057
Pimelobacter simplex	2045	S	49	21	70	0.00053
Kribbella sp. NBC_00709	2975972	S	36	21	57	0.00044
Nonomuraea sp. NBC_00507	2976002	S	39	15	54	0.00041
Nonomuraea fuscirosea	1291556	S	47	21	68	0.00052
Nocardiopsis exhalans	163604	S	54	56	110	0.00084
Spiractinospora alimapuensis	2820884	S	34	2	36	0.00027
Actinomyces howellii	52771	S	110	58	168	0.00128
Frankia sp. ArI3	1858	S	41	13	54	0.00041
Jiangella sp. DSM 45060	1798224	S	44	12	56	0.00043
Baekduia alba	2997333	S	45	10	55	0.00042
Baekduia soli	496014	S	37	8	45	0.00034
Euzebya pacifica	1608957	S	82	4	86	0.00066
Rubrobacter tropicus	2653851	S	43	3	46	0.00035
Bacillus thuringiensis	1428	S	39	436	475	0.00363
Bacillus velezensis	492670	S	77	2001	2078	0.01586
Lysinibacillus fusiformis	28031	S	80	79	159	0.00121
Heyndrickxia oleronia	38875	S	83	107	190	0.00145
Neobacillus mesonae	1193713	S	57	27	84	0.00064
Paenibacillus mucilaginosus	61624	S	71	65	136	0.00104
Paenibacillus spongiae	2909671	S	35	9	44	0.00034
Staphylococcus aureus	1280	S	210	5307	5517	0.04212
Staphylococcus cohnii	29382	S	53	42	95	0.00073
Staphylococcus simulans	1286	S	37	17	54	0.00041
Staphylococcus simiae	308354	S	36	24	60	0.00046
Laceyella sacchari	37482	S	283	42	325	0.00248
Thermoactinomyces vulgaris	2026	S	103	15	118	0.00090
Aerococcus tenax	3078812	S	1397	748	2145	0.01637
Oenococcus oeni	1247	S	121	101	222	0.00169
Streptococcus pluranimalium	82348	S	97	149	246	0.00188
Faecalibacterium prausnitzii	853	S	100	131	231	0.00176
Dysosmobacter welbionis	2093857	S	70	122	192	0.00147
Flavonifractor plautii	292800	S	63	17	80	0.00061
Clostridium bornimense	1216932	S	82	57	139	0.00106
Carboxydocella thermautotrophica	178899	S	36	2	38	0.00029
Agathobacter rectalis	39491	S	78	60	138	0.00105
Synechococcus sp. PCC 6312	195253	S	32	39	71	0.00054
Chroococcidiopsis thermalis	54299	S	90	46	136	0.00104
Mycoplasma sp. 1018B	2967302	S	53	12	65	0.00050
Psychrobacter sp. van23A	3064892	S	5808	5538	11346	0.08661
Psychrobacter sp. WB2	3043330	S	289	134	423	0.00323
Psychrobacter sp. KFRI-CH2-11	3156079	S	214	14	228	0.00174
Psychrobacter sp. P11G3	1699623	S	50	5	55	0.00042
Psychrobacter sp. KH172YL61	2517899	S	39	29	68	0.00052
Psychrobacter sp. P11G5	1699624	S	35	10	45	0.00034
Acinetobacter dispersus	70348	S	84	31	115	0.00088
Acinetobacter johnsonii	40214	S	68	85	153	0.00117
Acinetobacter radioresistens	40216	S	57	60	117	0.00089
Pseudomonas sp. BT-42-2	2986927	S	96	102	198	0.00151
Pseudomonas sp. ATCC 13867	1294143	S	46	192	238	0.00182
Pseudomonas sp. WJP1	2986947	S	34	76	110	0.00084
Pseudomonas otitidis	319939	S	711	98	809	0.00618
Pseudomonas bijieensis	2681983	S	342	652	994	0.00759
Pseudomonas putida	303	S	91	401	492	0.00376
Pseudomonas granadensis	1421430	S	129	32	161	0.00123
Pseudomonas fluorescens	294	S	48	16	64	0.00049
Pseudomonas aeruginosa	287	S	112	699	811	0.00619
Pseudomonas syringae	317	S	34	61	95	0.00073
Pseudomonas chlororaphis	587753	S	74	57	131	0.00100
Pseudomonas asiatica	2219225	S	37	148	185	0.00141
Azotobacter chroococcum	353	S	35	12	47	0.00036
Klebsiella grimontii	2058152	S	137	1186	1323	0.01010
Klebsiella pneumoniae	573	S	111	4933	5044	0.03850
Escherichia coli	562	S	119	8909	9028	0.06892
Salmonella enterica	28901	S	46	11071	11117	0.08486
Serratia liquefaciens	614	S	146	106	252	0.00192
Serratia grimesii	82995	S	65	7	72	0.00055
Serratia marcescens	615	S	56	138	194	0.00148
Yersinia enterocolitica	630	S	365	130	495	0.00378
Edwardsiella piscicida	1263550	S	406	283	689	0.00526
Edwardsiella tarda	636	S	48	34	82	0.00063
Buchnera aphidicola	9	S	58	7	65	0.00050
Paraglaciecola sp. L1A13	2686359	S	1700	145	1845	0.01408
Pseudoalteromonas tunicata	314281	S	170	43	213	0.00163
Colwellia sp. Arc7-635	2497879	S	124	8	132	0.00101
Ferrimonas sp. YFM	3028878	S	70	8	78	0.00060
Aeromonas salmonicida	645	S	1848	914	2762	0.02108
Xanthomonas cannabis	1885674	S	56	2	58	0.00044
Xanthomonas euvesicatoria	456327	S	49	8090	8139	0.06213
Xanthomonas translucens	343	S	36	10	46	0.00035
Xanthomonas campestris	339	S	33	311	344	0.00263
Stenotrophomonas maltophilia	40324	S	96	204	300	0.00229
Stenotrophomonas sp. BIO128-Bstrain	3027225	S	43	28	71	0.00054
Lysobacter capsici	435897	S	35	60	95	0.00073
Luteimonas sp. S4-F44	2925842	S	58	6	64	0.00049
Halomonas alkaliantarctica	232346	S	718	81	799	0.00610
Halomonas sp. BM-2019	2811227	S	51	70	121	0.00092
Vreelandella alkaliphila	272774	S	74	21	95	0.00073
Photobacterium damselae	38293	S	133	50	183	0.00140
Photobacterium ganghwense	320778	S	41	13	54	0.00041
Bradyrhizobium sp. Ash2021	2954771	S	761	76	837	0.00639
Bradyrhizobium sp. CCGE-LA001	1223566	S	570	188	758	0.00579
Bradyrhizobium diazoefficiens	1355477	S	40	217	257	0.00196
Rhodopseudomonas palustris	1076	S	60	14	74	0.00056
Rhizobium phaseoli	396	S	39	101	140	0.00107
Agrobacterium tumefaciens	358	S	56	113	169	0.00129
Sinorhizobium sp. BG8	2613773	S	38	45	83	0.00063
Shinella sumterensis	1967501	S	33	35	68	0.00052
Mesorhizobium sp. 131-2-1	2744518	S	99	88	187	0.00143
Mesorhizobium sp. DCY119	2108445	S	47	11	58	0.00044
Mesorhizobium sp. B2-1-1	2589974	S	42	10	52	0.00040
Mesorhizobium sp. M1A.F.Ca.IN.022.06.1.1	2493680	S	41	17	58	0.00044
Mesorhizobium jarvisii	1777867	S	34	258	292	0.00223
Phyllobacterium sp. T1293	555317	S	48	7	55	0.00042
Brucella sp. HL-2	2986924	S	356	121	477	0.00364
Ochrobactrum quorumnocens	271865	S	134	77	211	0.00161
Methylobacterium nodulans	114616	S	61	97	158	0.00121
uncultured Roseibium sp.	1936171	S	137	21	158	0.00121
Youhaiella tibetensis	1447062	S	71	13	84	0.00064
uncultured Martelella sp.	392331	S	117	27	144	0.00110
Azorhizobium caulinodans	7	S	58	15	73	0.00056
Hyphomicrobium sp. ghe19	2682968	S	53	2	55	0.00042
Methylocystis heyeri	391905	S	64	25	89	0.00068
uncultured Cohaesibacter sp.	1002546	S	85	7	92	0.00070
Acuticoccus sp. MNP-M23	3072793	S	34	4	38	0.00029
Sphingomonas sp. MM-1	745310	S	106	179	285	0.00218
Sphingomonas paucimobilis	13689	S	37	65	102	0.00078
Sphingopyxis sp. OPL5	2486273	S	60	12	72	0.00055
Sphingopyxis lindanitolerans	2054227	S	35	33	68	0.00052
Sphingobium sp. YBL2	484429	S	40	153	193	0.00147
Qipengyuania sediminis	1532023	S	42	18	60	0.00046
Paracoccus yeei	147645	S	65	206	271	0.00207
Paracoccus aerodenitrificans	3017781	S	33	76	109	0.00083
Gemmobacter aquarius	2169400	S	104	29	133	0.00102
Thioclava sp. GXIMD4216	3131929	S	44	8	52	0.00040
Salipiger sp. H15	3029062	S	142	42	184	0.00140
Roseovarius indicus	540747	S	45	29	74	0.00056
Roseicyclus marinus	2161673	S	46	4	50	0.00038
Roseomonas marmotae	2768161	S	99	23	122	0.00093
Sediminicoccus sp. KRV36	3133721	S	34	2	36	0.00027
Skermanella pratensis	2233999	S	89	27	116	0.00089
Paramagnetospirillum magneticum	84159	S	38	12	50	0.00038
Brevundimonas bullata	13160	S	58	54	112	0.00085
Brevundimonas nasdae	172043	S	37	81	118	0.00090
Cupriavidus taiwanensis	164546	S	1705	500	2205	0.01683
Cupriavidus gilardii	82541	S	132	54	186	0.00142
Cupriavidus cauae	2608999	S	45	20	65	0.00050
Cupriavidus necator	106590	S	41	14	55	0.00042
Burkholderia stagnalis	1503054	S	107	52	159	0.00121
Burkholderia multivorans	87883	S	72	57	129	0.00098
Burkholderia lata	482957	S	71	97	168	0.00128
Burkholderia ubonensis	101571	S	45	35	80	0.00061
Burkholderia pyrrocinia	60550	S	42	71	113	0.00086
Burkholderia pseudomallei	28450	S	36	134	170	0.00130
Paraburkholderia sp. PGU19	2735434	S	54	40	94	0.00072
Variovorax paradoxus	34073	S	65	157	222	0.00169
Acidovorax sp. RAC01	1842533	S	115	159	274	0.00209
Hydrogenophaga sp. BPS33	2651974	S	33	35	68	0.00052
Paracidovorax avenae	80867	S	55	50	105	0.00080
Massilia sp. PAMC28688	2861283	S	95	92	187	0.00143
Herbaspirillum seropedicae	964	S	46	14	60	0.00046
Achromobacter deleyi	1353891	S	44	29	73	0.00056
Achromobacter denitrificans	32002	S	42	19	61	0.00047
Achromobacter spanius	217203	S	39	73	112	0.00085
Achromobacter xylosoxidans	85698	S	38	34	72	0.00055
Mitsuaria sp. 7	1658665	S	34	12	46	0.00035
Piscinibacter gummiphilus	946333	S	37	13	50	0.00038
Sulfuritortus calidifontis	1914471	S	210	112	322	0.00246
Sulfuriferula sp. AH1	1985873	S	51	4	55	0.00042
Oryzomicrobium terrae	1735038	S	86	20	106	0.00081
Tenacibaculum sp. 190524A02b	3137860	S	2072	122	2194	0.01675
Flavobacterium sp. YJ01	3031997	S	107	64	171	0.00131
Nonlabens dokdonensis	328515	S	198	15	213	0.00163
Chryseobacterium glaciei	1685010	S	818	46	864	0.00660
Chryseobacterium aureum	2497456	S	57	4	61	0.00047
Epilithonimonas vandammei	2487072	S	171	62	233	0.00178
Bacteroides zoogleoformans	28119	S	141	59	200	0.00153
Bacteroides uniformis	820	S	59	120	179	0.00137
Bacteroides eggerthii	28111	S	34	14	48	0.00037
Phocaeicola vulgatus	821	S	132	58	190	0.00145
Phocaeicola dorei	357276	S	99	52	151	0.00115
Segatella copri	165179	S	377	31	408	0.00311
uncultured Acetobacteroides sp.	1760811	S	48	1	49	0.00037
uncultured Draconibacterium sp.	1573823	S	84	4	88	0.00067
Hymenobacter sp. YIM 151858-1	2987688	S	57	25	82	0.00063
Rufibacter radiotolerans	1379910	S	74	12	86	0.00066
Sphingobacterium mizutaii	1010	S	149	23	172	0.00131
Flavihumibacter rivuli	2838156	S	36	1	37	0.00028
Rhodocaloribacter litoris	2558931	S	40	4	44	0.00034
Lacipirellula parvula	2650471	S	756	42	798	0.00609
Stieleria neptunia	2527979	S	65	11	76	0.00058
Planctoellipticum variicoloris	3064265	S	40	11	51	0.00039
Gemmata obscuriglobus	114	S	33	8	41	0.00031
Urbifossiella limnaea	2528023	S	40	8	48	0.00037
Anaerohalosphaera lusitana	1936003	S	34	0	34	0.00026
Sorangium cellulosum	56	S	1208	106	1314	0.01003
Polyangium aurulentum	2567896	S	37	0	37	0.00028
Sandaracinus amylolyticus	927083	S	124	5	129	0.00098
Nannocystis poenicansa	2995304	S	33	1	34	0.00026
Haliangium ochraceum	80816	S	32	1	33	0.00025
Pyxidicoccus parkwaysis	2813578	S	35	26	61	0.00047
Archangium gephyra	48	S	79	4	83	0.00063
Desulfovibrio desulfuricans	876	S	50	37	87	0.00066
uncultured Desulfobacter sp.	240139	S	33	11	44	0.00034
Edaphobacter flagellatus	1933044	S	62	8	70	0.00053
Candidatus Chazhemtobacterium aquaticus	2715735	S	77	0	77	0.00059
unidentified bacterial endosymbiont	2355	S	35	164	199	0.00152
Halospeciosus flavus	3032283	S	531	43	574	0.00438
Salinigranum rubrum	755307	S	124	6	130	0.00099
Halomicrobium salinisoli	2878391	S	73	14	87	0.00066
Salinarchaeum sp. Harcht-Bsk1	1333523	S	48	0	48	0.00037
uncultured Methanoregula sp.	1005933	S	35	11	46	0.00035
Kenoshavirus chikenjars	2844662	S	167	622	789	0.00602
Kenoshavirus ohmyward	2844671	S	37	0	37	0.00028
Secretariatvirus secretariat	2844675	S	254	0	254	0.00194
Scapunavirus scap1	2560792	S	286	0	286	0.00218
Stubburvirus LKA1	1985731	S	127	0	127	0.00097
Burrovirus araxxi	2845589	S	83	38	121	0.00092
Burrovirus burro	2845591	S	44	7	51	0.00039
Burrovirus arete	2845590	S	43	27	70	0.00053
Akonivirus phedro	2845594	S	126	0	126	0.00096
Akonivirus akoni	2845587	S	33	0	33	0.00025
Pomeroyivirus V13	2846075	S	78	0	78	0.00060
Donellivirus gee	1084719	S	118	0	118	0.00090
Bingvirus bing	2560785	S	97	0	97	0.00074
Pepyhexavirus poco6	1982369	S	40	21	61	0.00047
Quivirus qui	3060665	S	76	0	76	0.00058
Natevirus nate	3060406	S	62	0	62	0.00047
Avon-Heathcote Estuary associated circular virus 3	1618254	S	549	0	549	0.00419
Gammarus sp. amphipod associated circular virus	1692250	S	124	0	124	0.00095
Penaeus monodon circovirus VN11	1419711	S	32	0	32	0.00024
Grondvirus lorian	2955959	S	33	0	33	0.00025
Keisodnavirus chaetenu	3060063	S	88	0	88	0.00067
Gemycircularvirus sp.	1983771	S	325	0	325	0.00248
Genomoviridae sp.	2202565	S	194	5	199	0.00152
Gemyduguivirus macra1	2844543	S	44	0	44	0.00034
Gemykibivirus humas4	2844584	S	32	0	32	0.00024
Gokushovirinae GAIR4	1701404	S	125	0	125	0.00095
Gokushovirinae Bog1183_53	1655646	S	45	0	45	0.00034
Gokushovirinae Fen7875_21	1655659	S	34	0	34	0.00026
Gokushovirinae GNX3R	1701405	S	33	0	33	0.00025
Chlamydiamicrovirus Chp1	2003327	S	64	0	64	0.00049
Enterogokushovirus EC6098	2844152	S	51	1985	2036	0.01554
Orthoflavivirus tembusu	3048360	S	252	0	252	0.00192