name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Flavobacterium azooxidireducens	1871076	S	88342	2012	90354	0.47339
Flavobacterium sp. I3-2	2748319	S	3479	579	4058	0.02126
Polaribacter sp. Hel1_33_78	1336804	S	44	12	56	0.00029
Chryseobacterium salivictor	2547600	S	347	18	365	0.00191
Chryseobacterium sp. T16E-39	2015076	S	89	3	92	0.00048
Elizabethkingia anophelis	1117645	S	49	13	62	0.00032
Segatella oris	28135	S	387	12	399	0.00209
Segatella copri	165179	S	287	13	300	0.00157
Bacteroides fragilis	817	S	50	26	76	0.00040
Bacteroides thetaiotaomicron	818	S	48	9	57	0.00030
Bacteroides ovatus	28116	S	43	77	120	0.00063
Bacteroides uniformis	820	S	41	37	78	0.00041
Bacteroides eggerthii	28111	S	33	7	40	0.00021
Phocaeicola vulgatus	821	S	111	39	150	0.00079
Phocaeicola dorei	357276	S	71	28	99	0.00052
uncultured Acetobacteroides sp.	1760811	S	61	1	62	0.00032
uncultured Draconibacterium sp.	1573823	S	71	8	79	0.00041
Sphingobacterium sp. dk4302	2662364	S	128	104	232	0.00122
Sphingobacterium mizutaii	1010	S	35	135	170	0.00089
Prosthecochloris sp. HL-130-GSB	1974213	S	371	13	384	0.00201
Herbinix luporum	1679721	S	5760	2613	8373	0.04387
Agathobacter rectalis	39491	S	82	20	102	0.00053
Clostridium perfringens	1502	S	290	246	536	0.00281
Clostridium estertheticum	238834	S	225	15	240	0.00126
Clostridium sp. DL-VIII	641107	S	32	7	39	0.00020
Clostridium botulinum	1491	S	67	19	86	0.00045
Clostridium saccharobutylicum	169679	S	43	3	46	0.00024
Clostridium sporogenes	1509	S	40	20	60	0.00031
Faecalibacterium prausnitzii	853	S	86	60	146	0.00076
Alkaliphilus sp. B6464	2731219	S	268	21	289	0.00151
Bacillus thuringiensis	1428	S	65	713	778	0.00408
Bacillus cereus	1396	S	45	497	542	0.00284
Bacillus mycoides	1405	S	33	83	116	0.00061
Oceanobacillus iheyensis	182710	S	261	45	306	0.00160
Priestia flexa	86664	S	112	43	155	0.00081
Priestia aryabhattai	412384	S	62	145	207	0.00108
Virgibacillus sp. Bac330	2419841	S	168	18	186	0.00097
Paenibacillus andongensis	2975482	S	360	43	403	0.00211
Brevibacillus ruminantium	2950604	S	253	37	290	0.00152
Staphylococcus aureus	1280	S	186	5419	5605	0.02937
Staphylococcus cohnii	29382	S	95	70	165	0.00086
Staphylococcus edaphicus	1955013	S	35	10	45	0.00024
Staphylococcus simulans	1286	S	34	14	48	0.00025
Laceyella sacchari	37482	S	227	26	253	0.00133
Thermoactinomyces vulgaris	2026	S	132	14	146	0.00076
Caldicellulosiruptor saccharolyticus	44001	S	441	181	622	0.00326
Mycobacterium canetti	78331	S	1667	953	2620	0.01373
Mycolicibacterium sediminis	1286180	S	37	15	52	0.00027
Streptomyces sp. Go-475	2072505	S	276	79	355	0.00186
Streptomyces sp. WAC00303	2933779	S	58	42	100	0.00052
Streptomyces sp. NBC_01362	2903839	S	51	113	164	0.00086
Streptomyces collinus	42684	S	34	8	42	0.00022
Streptomyces sviceus	285530	S	32	372	404	0.00212
Leucobacter luti	340320	S	43	16	59	0.00031
Brevibacterium limosum	2697565	S	66	25	91	0.00048
Tessaracoccus defluvii	1285901	S	151	41	192	0.00101
Cutibacterium acnes	1747	S	104	32	136	0.00071
Nocardioides sp. TF02-7	2917724	S	42	32	74	0.00039
Verrucosispora sp. WMMD573	3015149	S	36	62	98	0.00051
Amycolatopsis acidiphila	715473	S	78	62	140	0.00073
Nonomuraea fuscirosea	1291556	S	62	12	74	0.00039
Catenulispora acidiphila	304895	S	71	10	81	0.00042
Mycoplasma miroungirhinis	754516	S	3081	67	3148	0.01649
Acholeplasma laidlawii	2148	S	38	4	42	0.00022
Anabaena sp. WA102	1647413	S	291	38	329	0.00172
Synechococcus sp. KORDI-100	1280380	S	42	5	47	0.00025
Deinococcus peraridilitoris	432329	S	33	2	35	0.00018
Klebsiella pneumoniae	573	S	168	12876	13044	0.06834
Klebsiella grimontii	2058152	S	111	925	1036	0.00543
Escherichia coli	562	S	211	10474	10685	0.05598
Enterobacteriaceae endosymbiont of Donacia simplex	2675784	S	137	25	162	0.00085
Enterobacter hormaechei	158836	S	71	1105	1176	0.00616
Yersinia enterocolitica	630	S	351	123	474	0.00248
Moellerella wisconsensis	158849	S	203	193	396	0.00207
Proteus mirabilis	584	S	35	65	100	0.00052
Edwardsiella piscicida	1263550	S	196	134	330	0.00173
Buchnera aphidicola	9	S	78	7	85	0.00045
Paraglaciecola sp. L1A13	2686359	S	2655	217	2872	0.01505
Alkalimarinus sediminis	1632866	S	68	5	73	0.00038
Thalassotalea psychrophila	3065647	S	33	1	34	0.00018
Vibrio campbellii	680	S	989	375	1364	0.00715
Vibrio alfacsensis	1074311	S	34	11	45	0.00024
Photobacterium damselae	38293	S	71	24	95	0.00050
Pseudomonas sp. G11	528343	S	226	204	430	0.00225
Pseudomonas baltica	2762576	S	283	9	292	0.00153
Pseudomonas knackmussii	65741	S	237	19	256	0.00134
Pseudomonas gozinkensis	2774461	S	117	9	126	0.00066
Pseudomonas tolaasii	29442	S	61	22	83	0.00043
Methylomonas koyamae	702114	S	1074	29	1103	0.00578
Acinetobacter sp. XS-4	2923375	S	675	164	839	0.00440
Acinetobacter pittii	48296	S	52	41	93	0.00049
Acinetobacter baumannii	470	S	47	1176	1223	0.00641
Acinetobacter dispersus	70348	S	70	21	91	0.00048
Francisella sp. LA112445	1395624	S	176	294	470	0.00246
Xanthomonas euvesicatoria	456327	S	154	21538	21692	0.11365
Vreelandella alkaliphila	272774	S	56	19	75	0.00039
Bacterioplanoides sp. SCSIO 12839	2829569	S	50	2	52	0.00027
Legionella sainthelensi	28087	S	94	6	100	0.00052
Cupriavidus taiwanensis	164546	S	1460	379	1839	0.00964
Cupriavidus gilardii	82541	S	766	190	956	0.00501
Cupriavidus cauae	2608999	S	41	9	50	0.00026
Paraburkholderia bonniea	2152891	S	38	8	46	0.00024
Bordetella genomosp. 9	1416803	S	36	17	53	0.00028
Massilia oculi	945844	S	83	20	103	0.00054
Leptothrix cholodnii	34029	S	138	22	160	0.00084
Chitinimonas arctica	2594795	S	51	4	55	0.00029
Bradyrhizobium sp. Ash2021	2954771	S	809	152	961	0.00503
Sphingomonas sp. PAMC26645	2565555	S	60	35	95	0.00050
Candidatus Trichorickettsia mobilis	1346319	S	33	5	38	0.00020
Arcobacter suis	1278212	S	61	13	74	0.00039
Malaciobacter molluscorum	1032072	S	77	9	86	0.00045
Campylobacter volucris	1031542	S	49	9	58	0.00030
Helicobacter pylori	210	S	37	8	45	0.00024
Halobacteriovorax marinus	97084	S	75	0	75	0.00039
Salinigranum rubrum	755307	S	103	2	105	0.00055
Halobaculum rubrum	2872158	S	38	0	38	0.00020
Halorussus aquaticus	2953748	S	111	3	114	0.00060
Sulfolobus sp. S-194	2512240	S	90	2	92	0.00048
Circovirus kiore	3052126	S	164	0	164	0.00086
Circovirus sp.	1964372	S	70	0	70	0.00037
Cyclovirus mmadu	3047964	S	38	0	38	0.00020
Puahadnavirus kaisui	3060662	S	299	0	299	0.00157
Gemykibivirus rhina2	2844600	S	33	0	33	0.00017
Aquambidensovirus asteroid1	2748302	S	39	0	39	0.00020
Gokushovirinae GAIR4	1701404	S	65	0	65	0.00034
Penintadodekavirus 5012	2956283	S	135	0	135	0.00071
Kayvirus JD7	1924729	S	54	0	54	0.00028
Scapunavirus scap1	2560792	S	39	0	39	0.00020
Percavirus equidgamma5	3050282	S	46	0	46	0.00024
Orthoflavivirus tembusu	3048360	S	285	0	285	0.00149
McMurdo Ice Shelf pond-associated circular DNA virus-1	1521385	S	263	0	263	0.00138
Chicken stool-associated circular virus	1930302	S	38	0	38	0.00020