name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Escherichia coli	562	S	817	38884	39701	0.22221
Escherichia marmotae	1499973	S	41	53	94	0.00053
Escherichia albertii	208962	S	39	67	106	0.00059
Klebsiella grimontii	2058152	S	200	1586	1786	0.01000
Klebsiella pneumoniae	573	S	136	3502	3638	0.02036
Enterobacter roggenkampii	1812935	S	53	155	208	0.00116
Enterobacter hormaechei	158836	S	52	837	889	0.00498
Citrobacter freundii	546	S	52	501	553	0.00310
Salmonella enterica	28901	S	67	2779	2846	0.01593
Lelliottia amnigena	61646	S	49	45	94	0.00053
Yersinia enterocolitica	630	S	435	140	575	0.00322
Serratia liquefaciens	614	S	78	48	126	0.00071
Serratia marcescens	615	S	66	128	194	0.00109
Providencia alcalifaciens	126385	S	98	57	155	0.00087
Proteus vulgaris	585	S	36	47	83	0.00046
Buchnera aphidicola	9	S	50	6	56	0.00031
Pectobacterium sp. F1-1	2949614	S	40	45	85	0.00048
Edwardsiella piscicida	1263550	S	48	74	122	0.00068
Paraglaciecola sp. L1A13	2686359	S	5260	496	5756	0.03222
Pseudomonas sp. FP597	2954096	S	84	147	231	0.00129
Pseudomonas tolaasii	29442	S	87	27	114	0.00064
Pseudomonas fluorescens	294	S	49	52	101	0.00057
Pseudomonas aeruginosa	287	S	77	584	661	0.00370
Pseudomonas chlororaphis	587753	S	33	69	102	0.00057
Pseudomonas entomophila	312306	S	44	14	58	0.00032
Halopseudomonas salegens	1434072	S	56	4	60	0.00034
Stutzerimonas stutzeri	316	S	35	35	70	0.00039
Marinobacter salinisoli	2769486	S	38	11	49	0.00027
Xanthomonas euvesicatoria	456327	S	158	27895	28053	0.15701
Xanthomonas translucens	343	S	45	52	97	0.00054
Lysobacter capsici	435897	S	147	69	216	0.00121
Stenotrophomonas maltophilia	40324	S	108	129	237	0.00133
Halomonas sp. THAF12	2587849	S	51	129	180	0.00101
Vreelandella alkaliphila	272774	S	79	47	126	0.00071
Marinobacterium aestuarii	1821621	S	37	5	42	0.00024
Bacterioplanoides sp. SCSIO 12839	2829569	S	33	3	36	0.00020
Acinetobacter dispersus	70348	S	113	61	174	0.00097
Acinetobacter calcoaceticus	471	S	36	27	63	0.00035
Acinetobacter johnsonii	40214	S	35	59	94	0.00053
Photobacterium damselae	38293	S	52	23	75	0.00042
Photobacterium sanguinicancri	875932	S	32	6	38	0.00021
Aeromonas veronii	654	S	37	103	140	0.00078
Methylomagnum ishizawai	1760988	S	49	12	61	0.00034
Salinisphaera sp. LB1	2183911	S	85	2	87	0.00049
Cupriavidus gilardii	82541	S	2587	928	3515	0.01967
Cupriavidus taiwanensis	164546	S	1501	519	2020	0.01131
Cupriavidus cauae	2608999	S	214	77	291	0.00163
Cupriavidus campinensis	151783	S	39	11	50	0.00028
Cupriavidus oxalaticus	96344	S	37	8	45	0.00025
Pandoraea oxalativorans	573737	S	2977	383	3360	0.01881
Pandoraea fibrosis	1891094	S	37	4	41	0.00023
Burkholderia cepacia	292	S	35	49	84	0.00047
Burkholderia pseudomallei	28450	S	44	248	292	0.00163
Paraburkholderia pallida	2547399	S	38	14	52	0.00029
Paraburkholderia phymatum	148447	S	35	35	70	0.00039
Achromobacter xylosoxidans	85698	S	74	125	199	0.00111
Variovorax paradoxus	34073	S	44	41	85	0.00048
Delftia acidovorans	80866	S	70	159	229	0.00128
Piscinibacter gummiphilus	946333	S	32	16	48	0.00027
Vitreoscilla stercoraria	61	S	133	33	166	0.00093
Chitinimonas koreensis	356302	S	51	5	56	0.00031
Bradyrhizobium sp. Ash2021	2954771	S	1027	137	1164	0.00651
Bradyrhizobium sp. BTAi1	288000	S	48	11	59	0.00033
Bradyrhizobium sp. SK17	2057741	S	37	28	65	0.00036
Bradyrhizobium diazoefficiens	1355477	S	78	204	282	0.00158
Shinella sumterensis	1967501	S	64	58	122	0.00068
Shinella zoogloeoides	352475	S	36	70	106	0.00059
Mesorhizobium sp. M7A.F.Ce.TU.012.03.2.1	2493681	S	75	86	161	0.00090
Mesorhizobium terrae	2725666	S	169	77	246	0.00138
Methylobacterium nodulans	114616	S	38	51	89	0.00050
Pelagibacterium halotolerans	531813	S	145	51	196	0.00110
Maritalea myrionectae	454601	S	32	1	33	0.00018
Parvibaculum lavamentivorans	256618	S	41	38	79	0.00044
Sphingomonas sanguinis	33051	S	59	37	96	0.00054
Sphingomonas morindae	1541170	S	34	16	50	0.00028
Sphingomonas paucimobilis	13689	S	32	56	88	0.00049
Sphingopyxis sp. PET50	2976533	S	59	38	97	0.00054
uncultured Sphingopyxis sp.	310581	S	34	27	61	0.00034
Roseovarius sp. SCSIO 43702	2823043	S	54	42	96	0.00054
Paracoccus stylophorae	659350	S	33	92	125	0.00070
Azospirillum baldaniorum	1064539	S	37	41	78	0.00044
Skermanella mucosa	1789672	S	33	14	47	0.00026
Streptomyces sp. NBC_01197	2903768	S	202	344	546	0.00306
Streptomyces sp. RerS4	2942449	S	112	127	239	0.00134
Streptomyces sp. WAC00303	2933779	S	88	797	885	0.00495
Streptomyces sp. T12	477697	S	70	79	149	0.00083
Streptomyces sp. DSM 40868	2721173	S	62	71	133	0.00074
Streptomyces sp. SAT1	1849967	S	60	70	130	0.00073
Streptomyces sp. CB01881	2078691	S	54	49	103	0.00058
Streptomyces sp. WAC 06738	2203210	S	48	261	309	0.00173
Streptomyces sp. NBC_01725	2975923	S	47	417	464	0.00260
Streptomyces sp. HNA39	2850561	S	44	248	292	0.00163
Streptomyces sp. WMMC500	3015154	S	37	36	73	0.00041
Streptomyces sp. NBC_01431	2903863	S	36	28	64	0.00036
Streptomyces sp. NBC_00670	2975804	S	35	37	72	0.00040
Streptomyces sp. NBC_01439	2903867	S	35	73	108	0.00060
Streptomyces xanthophaeus	67385	S	225	306	531	0.00297
Streptomyces spongiicola	1690221	S	206	166	372	0.00208
Streptomyces koyangensis	188770	S	63	158	221	0.00124
Streptomyces canus	58343	S	36	29	65	0.00036
Streptomyces kanamyceticus	1967	S	156	121	277	0.00155
Streptomyces qinzhouensis	2599401	S	123	68	191	0.00107
Streptomyces venezuelae	54571	S	116	123	239	0.00134
Streptomyces griseorubiginosus	67304	S	78	72	150	0.00084
Streptomyces leeuwenhoekii	1437453	S	42	71	113	0.00063
Streptomyces marincola	2878388	S	41	21	62	0.00035
Streptomyces alfalfae	1642299	S	32	24	56	0.00031
Kitasatospora herbaricolor	68217	S	58	63	121	0.00068
Streptantibioticus cattleyicolor	29303	S	78	68	146	0.00082
Mycobacterium canetti	78331	S	2476	2365	4841	0.02710
Nocardia iowensis	204891	S	61	70	131	0.00073
Corynebacterium glyciniphilum	1404244	S	42	14	56	0.00031
Corynebacterium jeddahense	1414719	S	35	121	156	0.00087
Salinibacterium sp. ZJ450	2708338	S	68	68	136	0.00076
Cellulomonas sp. ES6	3039384	S	48	155	203	0.00114
Cellulomonas dongxiuzhuiae	2819979	S	39	80	119	0.00067
Austwickia chelonae	100225	S	49	19	68	0.00038
Nocardioides sp. Arc9.136	2996826	S	104	109	213	0.00119
Nocardioides sp. dk884	2662361	S	37	57	94	0.00053
Nocardioides dongkuii	2760089	S	74	75	149	0.00083
Nocardioides daphniae	402297	S	55	58	113	0.00063
Pimelobacter simplex	2045	S	38	24	62	0.00035
Cutibacterium acnes	1747	S	419	473	892	0.00499
Micromonospora sp. NBC_01796	2975987	S	40	226	266	0.00149
Actinoplanes sp. OR16	946334	S	52	45	97	0.00054
Actinoplanes teichomyceticus	1867	S	50	42	92	0.00051
Dactylosporangium sp. NBC_01737	2975959	S	43	40	83	0.00046
Dactylosporangium sp. AC04546	2862460	S	36	25	61	0.00034
Catellatospora sp. IY07-71	2728827	S	45	31	76	0.00043
Couchioplanes caeruleus	56438	S	42	32	74	0.00041
Phytohabitans suffuscus	624315	S	32	16	48	0.00027
Amycolatopsis sp. AA4	1896961	S	51	62	113	0.00063
Amycolatopsis sp. DSM 110486	2865832	S	33	42	75	0.00042
Amycolatopsis cynarae	2995223	S	86	55	141	0.00079
Amycolatopsis mediterranei	33910	S	46	64	110	0.00062
Saccharopolyspora erythraea	1836	S	54	45	99	0.00055
Kutzneria chonburiensis	1483604	S	67	37	104	0.00058
Actinokineospora sp. UTMC 2448	2268449	S	37	33	70	0.00039
Nonomuraea coxensis	404386	S	509	329	838	0.00469
Microbispora hainanensis	568844	S	37	22	59	0.00033
Actinomadura verrucosospora	46165	S	58	54	112	0.00063
Thermomonospora amylolytica	1411117	S	54	49	103	0.00058
Catenulispora acidiphila	304895	S	42	19	61	0.00034
Baekduia soli	496014	S	40	20	60	0.00034
Capillimicrobium parvum	2884022	S	38	18	56	0.00031
Aquihabitans sp. G128	2849779	S	40	20	60	0.00034
Rubrobacter xylanophilus	49319	S	55	5	60	0.00034
Bacillus thuringiensis	1428	S	89	1055	1144	0.00640
Bacillus velezensis	492670	S	34	1098	1132	0.00634
Halobacillus sp. ACCC02827	3052090	S	94	87	181	0.00101
Paenibacillus sp. DCT19	2211212	S	43	49	92	0.00051
Paenibacillus mucilaginosus	61624	S	157	18	175	0.00098
Paenibacillus kribbensis	172713	S	70	33	103	0.00058
Paenibacillus lycopersici	2704462	S	41	6	47	0.00026
Paenibacillus durus	44251	S	36	10	46	0.00026
Aneurinibacillus uraniidurans	2966586	S	97	33	130	0.00073
Staphylococcus aureus	1280	S	338	4812	5150	0.02882
Staphylococcus simulans	1286	S	62	31	93	0.00052
Staphylococcus cohnii	29382	S	61	49	110	0.00062
Salinicoccus sp. Bachu38	3136731	S	39	5	44	0.00025
Laceyella sacchari	37482	S	282	47	329	0.00184
Thermoactinomyces vulgaris	2026	S	126	20	146	0.00082
Lactococcus garvieae	1363	S	77	56	133	0.00074
Enterococcus sp. FZMF	3050383	S	46	299	345	0.00193
Vagococcus lutrae	81947	S	71	220	291	0.00163
Clostridium sp. JN-1	2483110	S	164	15	179	0.00100
Clostridium perfringens	1502	S	206	743	949	0.00531
Clostridium botulinum	1491	S	51	10	61	0.00034
Faecalibacterium prausnitzii	853	S	89	105	194	0.00109
Flavonifractor plautii	292800	S	73	21	94	0.00053
Anaerocolumna sedimenticola	2696063	S	165	7	172	0.00096
Anaerocolumna sp. AGMB13020	3081750	S	46	1	47	0.00026
Agathobacter rectalis	39491	S	98	57	155	0.00087
Coprococcus eutactus	33043	S	34	35	69	0.00039
Lachnospira eligens	39485	S	33	23	56	0.00031
Petrocella atlantisensis	2173034	S	177	42	219	0.00123
Paraclostridium sordellii	1505	S	36	14	50	0.00028
Alkaliphilus metalliredigens	208226	S	45	6	51	0.00029
Caminicella sporogenes	166485	S	32	4	36	0.00020
Halothermothrix orenii	31909	S	70	3	73	0.00041
Parvimonas micra	33033	S	443	770	1213	0.00679
Mesomycoplasma neurolyticum	2120	S	3198	115	3313	0.01854
Anabaena sp. 90	46234	S	541	125	666	0.00373
Nostoc sp. PCC 7120 = FACHB-418	103690	S	114	21	135	0.00076
Nostoc sp. C052	2576902	S	90	44	134	0.00075
Sphaerospermopsis torques-reginae	984207	S	40	3	43	0.00024
Cyanobacterium aponinum	379064	S	160	9	169	0.00095
Oscillatoria acuminata	118323	S	56	7	63	0.00035
Moorena producens	1155739	S	60	1	61	0.00034
Planktothricoides raciborskii	132608	S	50	9	59	0.00033
cyanobacterium endosymbiont of Rhopalodia gibberula	1763363	S	49	0	49	0.00027
Brevefilum fermentans	1986204	S	46	11	57	0.00032
Flavobacterium dauae	1563479	S	4051	6850	10901	0.06101
Flavobacterium azooxidireducens	1871076	S	603	56	659	0.00369
Flavobacterium sp. I3-2	2748319	S	54	69	123	0.00069
Flavobacterium sp. KACC 22763	3025668	S	54	178	232	0.00130
Flavobacterium cyclinae	2895947	S	36	9	45	0.00025
Polaribacter sp. NJDZ03	2855841	S	52	16	68	0.00038
Polaribacter sp. AHE13PA	2745562	S	39	31	70	0.00039
Winogradskyella sp. MH6	2929510	S	42	6	48	0.00027
Candidatus Arcticimaribacter forsetii	2820661	S	33	2	35	0.00020
Empedobacter falsenii	343874	S	5411	5515	10926	0.06115
Chryseobacterium paludis	2956784	S	32	37	69	0.00039
Elizabethkingia anophelis	1117645	S	95	91	186	0.00104
Parvicella tangerina	2829795	S	37	6	43	0.00024
Hymenobacter volaticus	2932254	S	3669	141	3810	0.02132
Chondrinema litorale	2994555	S	40	1	41	0.00023
Mangrovivirga cuniculi	2715131	S	36	2	38	0.00021
Bacteroides ovatus	28116	S	51	207	258	0.00144
Bacteroides uniformis	820	S	42	228	270	0.00151
Bacteroides eggerthii	28111	S	32	105	137	0.00077
Phocaeicola vulgatus	821	S	133	307	440	0.00246
Phocaeicola dorei	357276	S	98	341	439	0.00246
Segatella copri	165179	S	284	168	452	0.00253
uncultured Acetobacteroides sp.	1760811	S	90	5	95	0.00053
uncultured Draconibacterium sp.	1573823	S	129	35	164	0.00092
Flavisolibacter tropicus	1492898	S	76	11	87	0.00049
Sediminibacterium sp. TEGAF015	575378	S	48	18	66	0.00037
Gemmatimonas groenlandica	2732249	S	38	16	54	0.00030
Helicobacter pylori	210	S	557	29	586	0.00328
Arcobacter ellisii	913109	S	97	30	127	0.00071
Geomonas sp. RF6	2897342	S	212	51	263	0.00147
Candidatus Electrothrix sp. GW3-4	3126740	S	170	11	181	0.00101
Desulfovibrio desulfuricans	876	S	35	20	55	0.00031
Fuerstiella marisgermanici	1891926	S	109	2	111	0.00062
Gimesia algae	2527971	S	51	18	69	0.00039
Frigoriglobus tundricola	2774151	S	63	14	77	0.00043
Sorangium cellulosum	56	S	67	25	92	0.00051
Nannocystis poenicansa	2995304	S	88	4	92	0.00051
Candidatus Saccharimonas aalborgensis	1332188	S	38	28	66	0.00037
Candidatus Mycosynbacter amalyticus	2665156	S	35	33	68	0.00038
Candidatus Chazhemtobacterium aquaticus	2715735	S	49	0	49	0.00027
Granulicella sp. WH15	2602070	S	79	4	83	0.00046
Thermodesulfovibrio yellowstonii	28262	S	66	0	66	0.00037
Salinigranum rubrum	755307	S	138	23	161	0.00090
Natrinema salinisoli	2878535	S	52	26	78	0.00044
Methanosarcina lacustris	170861	S	80	3	83	0.00046
Methanococcus maripaludis	39152	S	32	2	34	0.00019
Thermococcus pacificus	71998	S	35	2	37	0.00021
Acidianus ambivalens	2283	S	124	1	125	0.00070
Gokushovirinae GAIR4	1701404	S	6453	0	6453	0.03612
Marine snail associated circular virus	1692255	S	81	0	81	0.00045
Protoambidensovirus incertum1	3060653	S	314	0	314	0.00176
Secretariatvirus secretariat	2844675	S	81	0	81	0.00045
Varunavirus BUCT194	3060796	S	115	0	115	0.00064
Moomoovirus moomoo	2956200	S	83	94	177	0.00099
Inhavirus P12024S	1982248	S	91	0	91	0.00051
Coruscantvirus coruscant	3059903	S	64	0	64	0.00036
McMurdo Ice Shelf pond-associated circular DNA virus-1	1521385	S	837	0	837	0.00468
Duck faeces associated circular DNA virus 2	1843769	S	518	0	518	0.00290
Duck faeces associated circular DNA virus 3	1843770	S	199	0	199	0.00111
Orthoflavivirus tembusu	3048360	S	515	0	515	0.00288
Invertebrate iridescent virus 22	345198	S	128	1	129	0.00072
Invertebrate iridescent virus 9	345195	S	90	17	107	0.00060
Invertebrate iridovirus 25	1301280	S	51	11	62	0.00035
Chrysochromulina parva virus	2565304	S	39	0	39	0.00022