# Export date: 2026-06-12 06:47:47 # Microbe: LKUD01 LKUD01 sp001412355 (ID: 5218) # Total amplicons: 53 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 16692 SRR12070300 AMPLICON PRJNA640402 Mangrove China:Shenzhen 2019/01/12 Mangrove soil sample 97780041 SAMN15317502 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12070300 16742 SRR12070305 AMPLICON PRJNA640402 Mangrove China:Shenzhen 2018/07/17 Mangrove soil sample 92581808 SAMN15317497 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12070305 16744 SRR12070307 AMPLICON PRJNA640402 Mangrove China:Shenzhen 2018/07/17 Mangrove soil sample 92544018 SAMN15317495 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12070307 16697 SRR12070309 AMPLICON PRJNA640402 Mangrove China:Shenzhen 2019/01/12 Mangrove soil sample 83428452 SAMN15317503 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12070309 16688 SRR12081864 AMPLICON PRJNA641273 Mangrove China:Shenzhen 2019/01/12 Mangrove soil sample 98638623 SAMN15351028 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12081864 16689 SRR12081865 AMPLICON PRJNA641273 Mangrove China:Shenzhen 2019/01/12 Mangrove soil sample 94626487 SAMN15351027 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12081865 16691 SRR12081867 AMPLICON PRJNA641273 Mangrove China:Shenzhen 2018/07/17 Mangrove soil sample 96923373 SAMN15351025 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12081867 15018 SRR12164885 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 95224001 SAMN15447437 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164885 15019 SRR12164886 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 93581805 SAMN15447436 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164886 15020 SRR12164887 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 102329488 SAMN15447435 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164887 15021 SRR12164888 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 97442589 SAMN15447434 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164888 15022 SRR12164889 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 100816119 SAMN15447433 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164889 15023 SRR12164890 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 98471946 SAMN15447432 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164890 15024 SRR12164891 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 100702242 SAMN15447431 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164891 14972 SRR12164902 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 99418125 SAMN15447430 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164902 15031 SRR12164913 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 101900339 SAMN15447429 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164913 15032 SRR12164914 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 97078976 SAMN15447428 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164914 14921 SRR12400118 AMPLICON PRJNA650560 Mangrove 13.74293 S 39.05851 W Brazil: Juliana River basin 2025/02/20 Mangrove mangrove sediment 92957645 SAMN15718367 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12400118 14923 SRR12400120 AMPLICON PRJNA650560 Mangrove 13.74293 S 39.05851 W Brazil: Juliana River basin 2025/02/20 Mangrove mangrove sediment 94604080 SAMN15718365 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12400120 21206 SRR12852713 AMPLICON PRJNA670253 Saltmarsh 30.3778N 87.83778W USA: Weeks Bay\, AL 2018-06-18 sediment 90669267 SAMN16490919 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852713 20905 SRR12852714 AMPLICON PRJNA670253 Saltmarsh 30.3778N 87.83778W USA: Weeks Bay\, AL 2018-06-18 sediment 52065075 SAMN16490918 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852714 20907 SRR12852719 AMPLICON PRJNA670253 Saltmarsh 30.05833N 89.79194W USA: New Orleans\, LA 2018-06-15 sediment 52116726 SAMN16490725 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852719 20910 SRR12852725 AMPLICON PRJNA670253 Saltmarsh 29.254934N 90.662146W USA: Cocodrie\, LA 2018-06-15 sediment 65868121 SAMN16490908 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852725 21212 SRR12852728 AMPLICON PRJNA670253 Saltmarsh 37.415258N 76.714539W USA: Gloucester Point\, VA 2018-06-29 sediment 19891809 SAMN16490905 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852728 21235 SRR12852799 AMPLICON PRJNA670253 Saltmarsh 32.751719N 79.897581W USA: Charleston\, SC 2018-06-25 sediment 49826455 SAMN16490842 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852799 20947 SRR12852801 AMPLICON PRJNA670253 Saltmarsh 32.751719N 79.897581W USA: Charleston\, SC 2018-06-25 sediment 53317782 SAMN16490840 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852801 14947 SRR15606917 AMPLICON PRJNA757625 Mangrove 22.5286 N 114.0028 E China 2025/05/20 Mangrove mangrove sidiments 44510676 SAMN20969819 PAIRED Illumina MiSeq OTHER 16S https://www.ncbi.nlm.nih.gov/sra/SRR15606917 14950 SRR15606920 AMPLICON PRJNA757625 Mangrove 22.5286 N 114.0028 E China 2025/05/20 Mangrove mangrove sidiments 44035698 SAMN20969816 PAIRED Illumina MiSeq OTHER 16S https://www.ncbi.nlm.nih.gov/sra/SRR15606920 14951 SRR15606921 AMPLICON PRJNA757625 Mangrove 22.5286 N 114.0028 E China 2025/05/20 Mangrove mangrove sidiments 35871374 SAMN20969815 PAIRED Illumina MiSeq OTHER 16S https://www.ncbi.nlm.nih.gov/sra/SRR15606921 14952 SRR15606922 AMPLICON PRJNA757625 Mangrove 22.5286 N 114.0028 E China 2025/05/20 Mangrove mangrove sidiments 39155284 SAMN20969814 PAIRED Illumina MiSeq OTHER 16S https://www.ncbi.nlm.nih.gov/sra/SRR15606922 14956 SRR15606926 AMPLICON PRJNA757625 Mangrove 22.5286 N 114.0028 E China 2025/05/20 Mangrove mangrove sidiments 23052386 SAMN20969824 PAIRED Illumina MiSeq OTHER 16S https://www.ncbi.nlm.nih.gov/sra/SRR15606926 14957 SRR15606927 AMPLICON PRJNA757625 Mangrove 22.5286 N 114.0028 E China 2025/05/20 Mangrove mangrove sidiments 45046456 SAMN20969823 PAIRED Illumina MiSeq OTHER 16S https://www.ncbi.nlm.nih.gov/sra/SRR15606927 14959 SRR15606929 AMPLICON PRJNA757625 Mangrove 22.5286 N 114.0028 E China 2025/05/20 Mangrove mangrove sidiments 38075898 SAMN20969821 PAIRED Illumina MiSeq OTHER 16S https://www.ncbi.nlm.nih.gov/sra/SRR15606929 14961 SRR15606931 AMPLICON PRJNA757625 Mangrove 22.5286 N 114.0028 E China 2025/05/20 Mangrove mangrove sidiments 27732334 SAMN20969811 PAIRED Illumina MiSeq OTHER 16S https://www.ncbi.nlm.nih.gov/sra/SRR15606931 14962 SRR15606932 AMPLICON PRJNA757625 Mangrove 22.5286 N 114.0028 E China 2025/05/20 Mangrove mangrove sidiments 44399306 SAMN20969810 PAIRED Illumina MiSeq OTHER https://www.ncbi.nlm.nih.gov/sra/SRR15606932 19078 SRR19630931 AMPLICON PRJNA847709 Mangrove 23.91777778N 117.4211111 E China 2025/07/20 Mangrove estuarine mud 44696092 SAMN28982388 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR19630931 19094 SRR19630984 AMPLICON PRJNA847709 Mangrove 22.52888889N 114.0030556 E China 2025/08/20 Mangrove estuarine mud 37968742 SAMN28982397 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR19630984 18797 SRR19630988 AMPLICON PRJNA847709 Mangrove 22.52888889N 114.0030556 E China 2025/08/20 Mangrove estuarine mud 35533652 SAMN28982393 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR19630988 22028 SRR22025433 AMPLICON PRJNA893704 Saltmarsh 38.72246N 76.33719W USA: Chesapeake Bay 2019-06-28 Spartina alterniflora peat soil 67960381 SAMN31431896 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025433 22036 SRR22025442 AMPLICON PRJNA893704 Saltmarsh 38.72246N 76.33719W USA: Chesapeake Bay 2019-06-28 Spartina alterniflora peat soil 88512415 SAMN31431888 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025442 22048 SRR22025457 AMPLICON PRJNA893704 Saltmarsh 38.76712N 76.38478W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 68284997 SAMN31431830 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025457 22067 SRR22025477 AMPLICON PRJNA893704 Saltmarsh 38.76422N 76.38453W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 57411505 SAMN31431856 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025477 21625 SRR26165210 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 13544713 SAMN37494741 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165210 22211 SRR27176390 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal juncus marsh soil 43094192 SAMN38763932 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176390 22216 SRR27176395 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal juncus marsh soil 34403840 SAMN38763928 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176395 22218 SRR27176397 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal juncus marsh soil 45270102 SAMN38763925 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176397 22219 SRR27176398 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal juncus marsh soil 40739498 SAMN38763924 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176398 22220 SRR27176399 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal juncus marsh soil 37266800 SAMN38763923 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176399 22282 SRR27176472 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal typha marsh soil 56133646 SAMN38763871 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176472 17571 SRR5814374 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 79842494 SAMN07338413 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR5814374 15843 SRR5814377 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 67856706 SAMN07338364 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814377 17573 SRR5814381 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 58333222 SAMN07338360 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR5814381 15855 SRR5814396 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 69004437 SAMN07338376 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814396