# Export date: 2026-06-12 06:48:08 # Microbe: Nitrosopumilus_5141 Nitrosopumilus oxyclinae (ID: 5351) # Total amplicons: 41 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 21638 ERR12080744 AMPLICON PRJEB66381 Saltmarsh 53.75970051N 7.71765833E 2019-07-15 salt marsh sediment 28040460 SAMEA114446181 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080744 21639 ERR12080745 AMPLICON PRJEB66381 Saltmarsh 53.75956037N 7.71675561E 2019-07-15 salt marsh sediment 55637259 SAMEA114446182 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080745 21612 ERR12080746 AMPLICON PRJEB66381 Saltmarsh 53.75981508N 7.71560755E 2019-07-15 salt marsh sediment 24259792 SAMEA114446183 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080746 21640 ERR12080747 AMPLICON PRJEB66381 Saltmarsh 53.75842165N 7.72091556E 2019-07-15 salt marsh sediment 36238259 SAMEA114446184 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080747 21641 ERR12080748 AMPLICON PRJEB66381 Saltmarsh 53.75874119N 7.71911983E 2019-07-15 salt marsh sediment 28738449 SAMEA114446185 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080748 21642 ERR12080749 AMPLICON PRJEB66381 Saltmarsh 53.75920507N 7.71902046E 2019-07-15 salt marsh sediment 39430492 SAMEA114446186 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080749 21643 ERR12080750 AMPLICON PRJEB66381 Saltmarsh 53.75971551N 7.71768791E 2019-07-15 salt marsh sediment 36165461 SAMEA114446187 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080750 21644 ERR12080751 AMPLICON PRJEB66381 Saltmarsh 53.75957867N 7.71678221E 2019-07-15 salt marsh sediment 50991346 SAMEA114446188 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080751 21645 ERR12080752 AMPLICON PRJEB66381 Saltmarsh 53.75984101N 7.71565287E 2019-07-15 salt marsh sediment 30858945 SAMEA114446189 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080752 21646 ERR12080753 AMPLICON PRJEB66381 Saltmarsh 53.75843454N 7.72094172E 2019-07-15 salt marsh sediment 36752666 SAMEA114446190 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080753 21647 ERR12080754 AMPLICON PRJEB66381 Saltmarsh 53.75922353N 7.7190601E 2019-07-15 salt marsh sediment 31766486 SAMEA114446191 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080754 21648 ERR12080755 AMPLICON PRJEB66381 Saltmarsh 53.75968597N 7.71762858E 2019-07-15 salt marsh sediment 23685296 SAMEA114446192 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080755 21613 ERR12080756 AMPLICON PRJEB66381 Saltmarsh 53.75954603N 7.71673026E 2019-07-15 salt marsh sediment 40309567 SAMEA114446193 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080756 21615 ERR12080758 AMPLICON PRJEB66381 Saltmarsh 53.75840802N 7.7208867E 2019-07-15 salt marsh sediment 42918048 SAMEA114446195 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080758 21650 ERR12080760 AMPLICON PRJEB66381 Saltmarsh 53.75919508N 7.71899634E 2019-07-15 salt marsh sediment 44792071 SAMEA114446198 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080760 21651 ERR12080761 AMPLICON PRJEB66381 Saltmarsh 53.762199N 7.7228E 2019-07-15 salt marsh sediment 36258609 SAMEA114446199 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080761 21652 ERR12080763 AMPLICON PRJEB66381 Saltmarsh 53.762271N 7.72236E 2019-07-15 salt marsh sediment 33851657 SAMEA114446201 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080763 21655 ERR12080766 AMPLICON PRJEB66381 Saltmarsh 53.762026N 7.72229E 2019-07-15 salt marsh sediment 43189084 SAMEA114446204 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080766 21656 ERR12080767 AMPLICON PRJEB66381 Saltmarsh 53.7626241N 7.72289697E 2019-07-15 salt marsh sediment 27760909 SAMEA114446205 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080767 21657 ERR12080768 AMPLICON PRJEB66381 Saltmarsh 53.76264435N 7.72270043E 2019-07-15 salt marsh sediment 30331668 SAMEA114446206 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080768 21616 ERR12080769 AMPLICON PRJEB66381 Saltmarsh 53.76266697N 7.72244677E 2019-07-15 salt marsh sediment 42693632 SAMEA114446207 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080769 23698 SRR13569319 AMPLICON PRJNA695132 Seagrass NA China: Dongying and Weihai 2018 Z.japonica sediment 23121014 SAMN17602091 SINGLE Illumina HiSeq 3000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13569319 19216 SRR13741155 AMPLICON PRJNA682229 Seaweed 51.666N 128.135W Canada: British Columbia 2016/06/05 Seawater 32001340 SAMN16984768 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13741155 19223 SRR13741162 AMPLICON PRJNA682229 Seaweed 51.666N 128.135W Canada: British Columbia 2016/06/07 Seawater 33431974 SAMN16984763 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13741162 19282 SRR13741705 AMPLICON PRJNA682229 Seaweed 51.666N 128.135W Canada: British Columbia 2016/06/06 Laminaria setchellii algal material 16440486 SAMN16989081 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13741705 19292 SRR13741715 AMPLICON PRJNA682229 Seaweed 51.666N 128.135W Canada: British Columbia 2016/06/07 Laminaria setchellii algal material 82900227 SAMN16989009 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13741715 19303 SRR13741726 AMPLICON PRJNA682229 Seaweed 51.666N 128.135W Canada: British Columbia 2016/06/07 Laminaria setchellii algal material 51626930 SAMN16989008 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13741726 22092 SRR23933685 AMPLICON PRJNA925448 Saltmarsh 44.61485N 67.74326W USA: Addison\, Maine 2021-08-03 marsh sediment 47918410 SAMN33188435 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23933685 22096 SRR23933690 AMPLICON PRJNA925448 Saltmarsh 44.616826N 67.802903W USA: Harrington\, Maine 2021-06-25 marsh sediment 7019466 SAMN33188430 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23933690 24383 SRR25047766 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere bulk sediment 59953180 SAMN36015168 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047766 24390 SRR25047773 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-11 Zostera marina rhizosphere bulk sediment 43441524 SAMN36015162 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047773 24396 SRR25047779 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor Zostera marina rhizosphere bulk sediment 52062766 SAMN36015157 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047779 21691 SRR5360920 AMPLICON PRJNA379357 Saltmarsh 53.76267N 7.72239E Germany: Spiekeroog 2015 Salt marsh sediment 131437922 SAMN06606318 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360920 21708 SRR5360938 AMPLICON PRJNA379357 Saltmarsh 53.76226N 7.72239E Germany: Spiekeroog 2015 Salt marsh sediment 160002042 SAMN06606300 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360938 22821 SRR5675586 AMPLICON PRJNA389390 Seagrass 54.330063 N 10.149543 E Germany:Baltic Sea 2016-02 Zostera marina seawater 33486725 SAMN07197220 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5675586 22822 SRR5675587 AMPLICON PRJNA389390 Seagrass 54.330063 N 10.149543 E Germany:Baltic Sea 2016-02 Zostera marina seawater 24860409 SAMN07197221 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5675587 22824 SRR5675589 AMPLICON PRJNA389390 Seagrass 54.330063 N 10.149543 E Germany:Baltic Sea 2016-02 Zostera marina seawater 26204394 SAMN07197219 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5675589 22842 SRR5675607 AMPLICON PRJNA389390 Seagrass 54.330063 N 10.149543 E Germany:Baltic Sea 2016-02 Zostera marina seawater 7920816 SAMN07197226 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR5675607 22843 SRR5675608 AMPLICON PRJNA389390 Seagrass 54.330063 N 10.149543 E Germany:Baltic Sea 2016-02 Zostera marina seawater 35201942 SAMN07197225 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR5675608 22877 SRR5675642 AMPLICON PRJNA389390 Seagrass 54.330063 N 10.149543 E Germany:Baltic Sea 2016-02 Zostera marina seawater 21944957 SAMN07197234 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR5675642 22885 SRR5675650 AMPLICON PRJNA389390 Seagrass 54.330063 N 10.149543 E Germany:Baltic Sea 2016-02 Zostera marina seawater 44181888 SAMN07197245 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR5675650