# Export date: 2026-06-15 10:45:23 # Microbe: Nesterenkonia (ID: 5554) # Total amplicons: 58 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 21642 ERR12080749 AMPLICON PRJEB66381 Saltmarsh 53.75920507N 7.71902046E 2019-07-15 salt marsh sediment 39430492 SAMEA114446186 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080749 21648 ERR12080755 AMPLICON PRJEB66381 Saltmarsh 53.75968597N 7.71762858E 2019-07-15 salt marsh sediment 23685296 SAMEA114446192 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080755 21614 ERR12080757 AMPLICON PRJEB66381 Saltmarsh 53.75979908N 7.7155871E 2019-07-15 salt marsh sediment 36331976 SAMEA114446194 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080757 20618 SRR12228803 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus alterniflorus rhizosphere 36028000 SAMN10953560 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228803 20624 SRR12228834 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 554476500 SAMN10953576 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228834 20630 SRR12228840 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 96120000 SAMN10953571 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228840 20631 SRR12228842 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 42956000 SAMN10953569 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228842 16735 SRR13291667 AMPLICON PRJNA685020 Mangrove 21.510783 N 110.010353 E China: Maoming 2019/04/25 Mangrove mangrove root-associated soil 39945152 SAMN17075136 PAIRED Illumina HiSeq 2500 GENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR13291667 18985 SRR13958805 AMPLICON PRJNA713958 Mangrove China: Hainan island 2025/12/17 Mangrove/intertidal mudflats mangrove forest and intertidal mudflats sediments 28822500 SAMN18275835 PAIRED Illumina HiSeq 2500 GENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR13958805 15187 SRR14740874 AMPLICON PRJNA735404 Mangrove 5.884847 N 102.481745 E Malaysia: Tok Bali 2017/03/07 Sonneratia alba and Avicennia alba Fruit 69026400 SAMN19581137 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740874 15197 SRR14740884 AMPLICON PRJNA735404 Mangrove 5.884847 N 102.481745 E Malaysia: Tok Bali 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 85593600 SAMN19581128 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740884 15215 SRR14740902 AMPLICON PRJNA735404 Mangrove 5.884847 N 102.481745 E Malaysia: Tok Bali 2017/03/07 Sonneratia alba and Avicennia alba Leaf 56707200 SAMN19581112 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740902 15248 SRR14740935 AMPLICON PRJNA735404 Mangrove 5.534833 N 102.944331 E Malaysia: Merang 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 130650600 SAMN19581082 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740935 15102 SRR15725493 AMPLICON PRJNA760823 Mangrove 21.5769 N 88.2923 E India: West Bengal 2025/04/20 Suaeda monoica medicinal mangrove plant and soil surrounding the plant 1243625100 SAMN21236003 PAIRED Illumina Genome Analyzer METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR15725493 15103 SRR15725550 AMPLICON PRJNA760823 Mangrove 21.5769 N 88.2923 E India: West Bengal 2025/04/20 Suaeda monoica medicinal mangrove plant and soil surrounding the plant 1517280600 SAMN21236003 PAIRED Illumina Genome Analyzer METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR15725550 15104 SRR15725658 AMPLICON PRJNA760823 Mangrove 21.5769 N 88.2923 E India: West Bengal 2025/04/20 Suaeda monoica medicinal mangrove plant and soil surrounding the plant 1908143400 SAMN21236003 PAIRED Illumina Genome Analyzer METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR15725658 15105 SRR15728886 AMPLICON PRJNA760823 Mangrove 21.5769 N 88.2923 E India: West Bengal 2025/04/20 Suaeda monoica medicinal mangrove plant and soil surrounding the plant 1438074000 SAMN21236003 PAIRED Illumina Genome Analyzer METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR15728886 18977 SRR15734458 AMPLICON PRJNA760823 Mangrove 21.5769 N 88.2923 E India: West Bengal 2025/04/20 Suaeda monoica estuarine mud 1626754200 SAMN21236003 PAIRED Illumina Genome Analyzer METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR15734458 14831 SRR15928148 AMPLICON PRJNA764039 Mangrove 16.3862 S 145.5638 E Australia: GBR 2018/08/21 coral coral 31313577 SAMN21467022 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR15928148 14866 SRR15928183 AMPLICON PRJNA764039 Mangrove 16.3862 S 145.5638 E Australia: GBR 2018/07/01 coral coral 10674041 SAMN21466990 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR15928183 21326 SRR1756945 AMPLICON PRJNA272558 Saltmarsh 24.61N 118.06E China not collected Spartina alterniflora Rhizoplane 14329950 SAMN03283786 PAIRED Illumina HiSeq 2000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR1756945 17799 SRR17658316 AMPLICON PRJNA798089 Mangrove 33.8469058S 151.2024254 E Australia: Sawmillers Reserve\, Sydney 2018/12/19 marine biofilm biofilm 38171946 SAMN25078439 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR17658316 24016 SRR19242046 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Tanmen 2021-01 seagrass seawater 51311000 SAMN28462881 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242046 24020 SRR19242050 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Tanmen 2021-01 seagrass seawater 51173000 SAMN28462878 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242050 20524 SRR19745567 AMPLICON PRJNA850096 Seaweed China:Putian 2020/05/15 after seaweed culture estuarine water 50615360 SAMN29155041 PAIRED Illumina HiSeq 4000 METAGENOMIC 16s/18s https://www.ncbi.nlm.nih.gov/sra/SRR19745567 20537 SRR19745588 AMPLICON PRJNA850096 Seaweed China:Putian 2020/01/08 after seaweed culture estuarine water 54039656 SAMN29155022 PAIRED Illumina HiSeq 4000 METAGENOMIC 16s/18s https://www.ncbi.nlm.nih.gov/sra/SRR19745588 22090 SRR23933683 AMPLICON PRJNA925448 Saltmarsh 43.2926N 70.5725W USA: Wells\, Maine 2021-06-22 marsh sediment 49448004 SAMN33188437 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23933683 17693 SRR24297416 AMPLICON PRJNA958136 Mangrove 16.27459 N 61.55722 W France: Guadeloupe 1905/07/12 Aratus pisonii and Minuca rapax coastal sea water 33405999 SAMN34279703 PAIRED Illumina MiSeq GENOMIC 18S https://www.ncbi.nlm.nih.gov/sra/SRR24297416 18367 SRR25047480 AMPLICON PRJNA988256 Mangrove 1.3802 N 103.9486 E Singapore: Pasir Ris Park 2021/08/13 plastic plastic 64213534 SAMN36011593 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047480 21619 SRR26165203 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 12152667 SAMN37494729 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165203 21620 SRR26165205 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 11937811 SAMN37494727 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165205 21621 SRR26165206 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 27129084 SAMN37494726 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165206 21622 SRR26165207 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 9220485 SAMN37494725 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165207 21623 SRR26165208 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 8495848 SAMN37494724 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165208 21625 SRR26165210 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 13544713 SAMN37494741 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165210 21626 SRR26165211 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 8113826 SAMN37494723 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165211 21627 SRR26165212 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 10589941 SAMN37494740 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165212 21628 SRR26165213 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 5731836 SAMN37494739 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165213 21629 SRR26165214 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 13494764 SAMN37494738 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165214 21630 SRR26165215 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 3525546 SAMN37494737 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165215 21631 SRR26165216 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 5824204 SAMN37494736 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165216 21632 SRR26165217 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 3047642 SAMN37494735 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165217 21633 SRR26165218 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 997474 SAMN37494734 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165218 21635 SRR26165220 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 1379496 SAMN37494732 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165220 21636 SRR26165222 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 803451 SAMN37494722 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165222 21637 SRR26165223 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 583575 SAMN37494721 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165223 18615 SRR27644708 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/23 Mangrove soil 12739870 SAMN39505330 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644708 16851 SRR28031531 AMPLICON PRJNA1077244 Mangrove 24.803064 N 37.180672 E Saudi Arabia: Umlij 2022/12/03 Avicennia marina Rizospher soil 45090900 SAMN39961992 PAIRED DNBSEQ-G400 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR28031531 16852 SRR28031532 AMPLICON PRJNA1077244 Mangrove 24.803064 N 37.180672 E Saudi Arabia: Umlij 2022/12/03 Avicennia marina Rizospher soil 45090900 SAMN39961992 PAIRED DNBSEQ-G400 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR28031532 17791 SRR4858370 AMPLICON PRJNA351850 Mangrove 21.74 N 88.14 E India: West Bengal'' 2014/07/25 bacterioplankton Chemaguri creek in Sundarbans mangrove ecoregion 557254391 SAMN05954868 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR4858370 21682 SRR5360910 AMPLICON PRJNA379357 Saltmarsh 53.7626N 7.72312E Germany: Spiekeroog 2015 Salt marsh sediment 149063150 SAMN06606328 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360910 21683 SRR5360911 AMPLICON PRJNA379357 Saltmarsh 53.76209N 7.72294E Germany: Spiekeroog 2015 Salt marsh sediment 183951321 SAMN06606327 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360911 15826 SRR5814353 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 63536408 SAMN07338401 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814353 21879 SRR6371049 AMPLICON PRJNA422172 Saltmarsh 37.8N 119.13E China 2017-10-04 Salt marsh soils 36974840 SAMN08166668 PAIRED Illumina MiniSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR6371049 21880 SRR6371050 AMPLICON PRJNA422172 Saltmarsh 37.8N 119.12E China 2017-10-04 Salt marsh soils 39326252 SAMN08166669 PAIRED Illumina MiniSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR6371050 21893 SRR6371064 AMPLICON PRJNA422172 Saltmarsh 37.77N 119.08E China 2017-10-04 Salt marsh soils 33061840 SAMN08166684 PAIRED Illumina MiniSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR6371064 21063 SRR8931072 AMPLICON PRJNA533745 Saltmarsh 48.15N 134.61E China: Sanjiang wetland 2017-12-12T10:30:00Z soil 26807333 SAMN11465912 PAIRED Illumina HiSeq 2000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8931072