# Export date: 2026-06-14 02:36:21 # Microbe: Prosthecochloris (ID: 6872) # Total amplicons: 69 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 21133 SRR11232909 AMPLICON PRJNA602775 Saltmarsh 41.7122N 69.9947W USA: Harwich\, MA Muddy Creek Marsh 2017-08 sediment 12194878 SAMN13950616 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11232909 20843 SRR11233083 AMPLICON PRJNA602775 Saltmarsh 41.123N 69.996W USA: Harwich\, MA Muddy Creek Marsh 2016-08-25 sediment 19584803 SAMN13950647 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233083 21386 SRR11233104 AMPLICON PRJNA602775 Saltmarsh 41.7123N 69.9957W USA: Harwich\, MA Muddy Creek Marsh 2017-08 sediment 20462341 SAMN13950541 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233104 20859 SRR11233119 AMPLICON PRJNA602775 Saltmarsh 41.123N 69.996W USA: Harwich\, MA Muddy Creek Marsh 2016-10-12 sediment 6286406 SAMN13950528 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233119 21170 SRR11233120 AMPLICON PRJNA602775 Saltmarsh 41.123N 69.996W USA: Harwich\, MA Muddy Creek Marsh 2017-07 sediment 17193832 SAMN13950526 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233120 21171 SRR11233122 AMPLICON PRJNA602775 Saltmarsh 41.123N 69.996W USA: Harwich\, MA Muddy Creek Marsh 2017-06 sediment 14619020 SAMN13950524 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233122 21172 SRR11233123 AMPLICON PRJNA602775 Saltmarsh 41.123N 69.996W USA: Harwich\, MA Muddy Creek Marsh 2017-08 sediment 7458351 SAMN13950527 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233123 20860 SRR11233139 AMPLICON PRJNA602775 Saltmarsh 41.7387N 69.9699W USA: Orleans\, MA marsh off of Davis Road 2016-10-26 sediment 9617112 SAMN13950514 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233139 20865 SRR11233185 AMPLICON PRJNA602775 Saltmarsh 41.7387N 69.9699W USA: Orleans\, MA marsh off of Davis Road 2015-08-26 sediment 13414094 SAMN13950705 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233185 20888 SRR11233231 AMPLICON PRJNA602775 Saltmarsh 41.7387N 69.9699W USA: Orleans\, MA marsh off of Davis Road 2016-06-27 sediment 11249595 SAMN13950693 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233231 20889 SRR11233232 AMPLICON PRJNA602775 Saltmarsh 41.7389N 69.9699W USA: Orleans\, MA marsh off of Davis Road 2016-06-27 sediment 11284203 SAMN13950692 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233232 21611 SRR11772251 AMPLICON PRJNA631747 Saltmarsh 42.78594979N 70.83731232W USA 2016 Sporobolus alterniflorus sediment 5081028422 SAMN14891083 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11772251 20560 SRR12125033 AMPLICON PRJNA643437 Saltmarsh 41.5758N 70.6394W USA: Little Sippewissett Salt Marsh\, Falmouth\, MA 2018-09-30 Salt marsh sediment 49555844 SAMN15414946 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12125033 20561 SRR12125034 AMPLICON PRJNA643437 Saltmarsh 41.5758N 70.6394W USA: Little Sippewissett Salt Marsh\, Falmouth\, MA 2018-09-30 Salt marsh sediment 44806366 SAMN15414947 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12125034 20579 SRR12125053 AMPLICON PRJNA643437 Saltmarsh 41.5758N 70.6394W USA: Little Sippewissett Salt Marsh\, Falmouth\, MA 2018-09-30 Salt marsh sediment 70042998 SAMN15414957 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12125053 20588 SRR12125063 AMPLICON PRJNA643437 Saltmarsh 41.5758N 70.6394W USA: Little Sippewissett Salt Marsh\, Falmouth\, MA 2018-09-30 Salt marsh sediment 50869283 SAMN15414992 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12125063 20602 SRR12125081 AMPLICON PRJNA643437 Saltmarsh 41.5758N 70.6394W USA: Little Sippewissett Salt Marsh\, Falmouth\, MA 2018-09-30 Salt marsh sediment 26863951 SAMN15414979 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12125081 23681 SRR12233903 AMPLICON PRJNA646607 Seagrass 37.35 N 122.57 E China:Rongcheng 2019-09-23 seagrass seawater 35270578 SAMN15547875 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12233903 23685 SRR12233907 AMPLICON PRJNA646607 Seagrass 37.35 N 122.57 E China:Rongcheng 2019-09-23 zostera marina seawater 44844786 SAMN15547886 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12233907 23686 SRR12233908 AMPLICON PRJNA646607 Seagrass 37.35 N 122.57 E China:Rongcheng 2019-09-23 zostera marina seawater 36242206 SAMN15547885 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12233908 23688 SRR12233910 AMPLICON PRJNA646607 Seagrass 37.35 N 122.57 E China:Rongcheng 2019-09-23 zostera japonica sediment 42177926 SAMN15547883 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12233910 21728 SRR1334521 AMPLICON PRJNA251325 Saltmarsh USA: Massachusetts\, Cape Cod\, Little Sippewissett Salt Marsh 2013-06 Salt marsh sediment 2276913 SAMN02819965 SINGLE 454 GS FLX Titanium METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR1334521 22395 SRR17216880 AMPLICON PRJNA788471 Saltmarsh 41.59N 70.639W USA: Massachusetts 2018-05 sediment 7879687 SAMN24002243 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216880 22396 SRR17216881 AMPLICON PRJNA788471 Saltmarsh 41.59N 70.639W USA: Massachusetts 2018-05 sediment 7875341 SAMN24002242 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216881 22397 SRR17216882 AMPLICON PRJNA788471 Saltmarsh 43.125N 70.868W USA: New Hampshire 2018-07 sediment 7877819 SAMN24002241 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216882 22398 SRR17216883 AMPLICON PRJNA788471 Saltmarsh 43.125N 70.868W USA: New Hampshire 2018-07 sediment 7879735 SAMN24002240 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216883 22399 SRR17216885 AMPLICON PRJNA788471 Saltmarsh 40.031N 74.08W USA: New Jersey 2018-06 sediment 7902129 SAMN24002239 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216885 22400 SRR17216886 AMPLICON PRJNA788471 Saltmarsh 41.59N 70.639W USA: Massachusetts 2018-05 sediment 7884788 SAMN24002238 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216886 22401 SRR17216887 AMPLICON PRJNA788471 Saltmarsh 41.59N 70.639W USA: Massachusetts 2018-05 sediment 7878946 SAMN24002237 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216887 22402 SRR17216888 AMPLICON PRJNA788471 Saltmarsh 43.125N 70.868W USA: New Hampshire 2018-07 sediment 7878997 SAMN24002236 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216888 22405 SRR17216891 AMPLICON PRJNA788471 Saltmarsh 41.59N 70.639W USA: Massachusetts 2018-05 sediment 7882314 SAMN24002233 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216891 22406 SRR17216892 AMPLICON PRJNA788471 Saltmarsh 43.125N 70.868W USA: New Hampshire 2018-07 sediment 7883571 SAMN24002232 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216892 23976 SRR19242006 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Tanmen 2020-08 seagrass seawater 38619500 SAMN28462839 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242006 23985 SRR19242015 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Tanmen 2020-08 seagrass seawater 33641000 SAMN28462838 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242015 23996 SRR19242026 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Tanmen 2020-08 seagrass seawater 34484000 SAMN28462837 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242026 24007 SRR19242037 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Tanmen 2020-08 seagrass seawater 46814000 SAMN28462836 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242037 24040 SRR19242070 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Yongxing Island 2020-08 seagrass seawater 39355500 SAMN28462833 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242070 22100 SRR23933743 AMPLICON PRJNA925448 Saltmarsh 44.616826N 67.802903W USA: Harrington\, Maine 2021-06-25 marsh sediment 135641404 SAMN33188457 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23933743 24341 SRR24965714 AMPLICON PRJNA985394 Seagrass 37.21 N 122.62 E China:Shandong 2021-06 Zostera marina shallow marine sediment 53650842 SAMN35797039 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR24965714 24342 SRR24965715 AMPLICON PRJNA985394 Seagrass 37.21 N 122.62 E China:Shandong 2021-06 Zostera marina shallow marine sediment 43773828 SAMN35797038 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR24965715 24344 SRR24965717 AMPLICON PRJNA985394 Seagrass 37.21 N 122.62 E China:Shandong 2021-06 Zostera marina shallow marine sediment 44522114 SAMN35797036 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR24965717 24364 SRR25047733 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-31 Zostera marina rhizosphere bulk sediment 54817518 SAMN36015149 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047733 24371 SRR25047740 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-31 Zostera marina rhizosphere bulk sediment 55562794 SAMN36015144 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047740 24376 SRR25047759 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere bulk sediment 63766248 SAMN36015172 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047759 24377 SRR25047760 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere bulk sediment 63720496 SAMN36015174 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047760 24378 SRR25047761 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere bulk sediment 59384290 SAMN36015173 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047761 24379 SRR25047762 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere high hydrogen sulphide area 53196934 SAMN36015171 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047762 24381 SRR25047764 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere high hydrogen sulphide area 48864942 SAMN36015170 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047764 24382 SRR25047765 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere high hydrogen sulphide area 46264302 SAMN36015169 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047765 24383 SRR25047766 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere bulk sediment 59953180 SAMN36015168 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047766 24384 SRR25047767 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere bulk sediment 39266654 SAMN36015167 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047767 24385 SRR25047768 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere bulk sediment 42254380 SAMN36015166 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047768 24387 SRR25047770 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere high hydrogen sulphide area 43111026 SAMN36015165 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047770 24388 SRR25047771 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere high hydrogen sulphide area 54390098 SAMN36015164 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047771 24389 SRR25047772 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere high hydrogen sulphide area 46873526 SAMN36015163 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047772 24390 SRR25047773 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-11 Zostera marina rhizosphere bulk sediment 43441524 SAMN36015162 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047773 24391 SRR25047774 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-11 Zostera marina rhizosphere bulk sediment 37618980 SAMN36015161 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047774 24393 SRR25047776 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-11 Zostera marina rhizosphere bulk sediment 26642112 SAMN36015160 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047776 24394 SRR25047777 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor Zostera marina rhizosphere bulk sediment 45472070 SAMN36015159 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047777 24395 SRR25047778 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor Zostera marina rhizosphere bulk sediment 42038864 SAMN36015158 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047778 24396 SRR25047779 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor Zostera marina rhizosphere bulk sediment 52062766 SAMN36015157 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047779 24398 SRR25047781 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor Zostera marina rhizosphere high hydrogen sulphide area 39458692 SAMN36015156 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047781 24399 SRR25047782 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor Zostera marina rhizosphere high hydrogen sulphide area 43385538 SAMN36015155 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047782 24400 SRR25047783 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor Zostera marina rhizosphere high hydrogen sulphide area 38582180 SAMN36015154 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047783 24401 SRR25047784 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor Zostera marina rhizosphere oxic area 37351692 SAMN36015153 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047784 21937 SRR6398185 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.38376004W USA 2013-07-07 Salt marsh sediment 6797931 SAMN08214145 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398185 22141 SRR6761105 AMPLICON PRJNA433990 Saltmarsh 29.927611N 88.829306W USA: Chandeleur Islands 2016-09-20 salt marsh sediment 311361624 SAMN08536660 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6761105 21034 SRR8207352 AMPLICON PRJNA505917 Saltmarsh 42.76N 70.89W USA: Plum Island Estuary 2016-03-09 Spartina alterniflora sediment 16979387 SAMN10439477 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8207352