# Export date: 2026-06-12 19:24:43 # Microbe: Desulfofrigus (ID: 7299) # Total amplicons: 70 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 23649 SRR12086836 AMPLICON PRJNA641753 Seagrass 37.85 N 119.1 E China:Dongying 2019-06 Spartina alterniflora sediment 460932328 SAMN15364575 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12086836 23659 SRR12086846 AMPLICON PRJNA641753 Seagrass 37.85 N 119.1 E China:Dongying 2019-06 Spartina alterniflora sediment 300108806 SAMN15364578 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12086846 14964 SRR12164894 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 93918767 SAMN15447455 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164894 20629 SRR12228839 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 59373500 SAMN10953572 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228839 20630 SRR12228840 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 96120000 SAMN10953571 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228840 20929 SRR12852765 AMPLICON PRJNA670253 Saltmarsh 34.75389N 76.76111W USA: Morehead City\, NC 2018-06-28 sediment 9834079 SAMN16490873 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852765 23725 SRR15068635 AMPLICON PRJNA744715 Seagrass 37.2 N 122.34 E China:Weihai 2019-06 Degradation sediment 489774366 SAMN20115048 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR15068635 23741 SRR15068651 AMPLICON PRJNA744715 Seagrass 37.2 N 122.34 E China:Weihai 2019-06 Zostera marina sediment 317030435 SAMN20115033 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR15068651 23743 SRR15068653 AMPLICON PRJNA744715 Seagrass 37.2 N 122.34 E China:Weihai 2019-06 Zostera japonica sediment 180332429 SAMN20115023 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR15068653 16745 SRR15306177 AMPLICON PRJNA750750 Mangrove 27.57708 S 48.51936 W Brazil: Florianopolis 2018/07/27 Mangrove estuarine mud 14390451 SAMN20486503 SINGLE Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR15306177 22395 SRR17216880 AMPLICON PRJNA788471 Saltmarsh 41.59N 70.639W USA: Massachusetts 2018-05 sediment 7879687 SAMN24002243 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216880 22396 SRR17216881 AMPLICON PRJNA788471 Saltmarsh 41.59N 70.639W USA: Massachusetts 2018-05 sediment 7875341 SAMN24002242 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216881 22397 SRR17216882 AMPLICON PRJNA788471 Saltmarsh 43.125N 70.868W USA: New Hampshire 2018-07 sediment 7877819 SAMN24002241 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216882 22398 SRR17216883 AMPLICON PRJNA788471 Saltmarsh 43.125N 70.868W USA: New Hampshire 2018-07 sediment 7879735 SAMN24002240 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216883 22399 SRR17216885 AMPLICON PRJNA788471 Saltmarsh 40.031N 74.08W USA: New Jersey 2018-06 sediment 7902129 SAMN24002239 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216885 22400 SRR17216886 AMPLICON PRJNA788471 Saltmarsh 41.59N 70.639W USA: Massachusetts 2018-05 sediment 7884788 SAMN24002238 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216886 22401 SRR17216887 AMPLICON PRJNA788471 Saltmarsh 41.59N 70.639W USA: Massachusetts 2018-05 sediment 7878946 SAMN24002237 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216887 22403 SRR17216889 AMPLICON PRJNA788471 Saltmarsh 43.125N 70.868W USA: New Hampshire 2018-07 sediment 7885767 SAMN24002235 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216889 22404 SRR17216890 AMPLICON PRJNA788471 Saltmarsh 40.031N 74.08W USA: New Jersey 2018-06 sediment 7884332 SAMN24002234 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216890 22405 SRR17216891 AMPLICON PRJNA788471 Saltmarsh 41.59N 70.639W USA: Massachusetts 2018-05 sediment 7882314 SAMN24002233 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216891 22406 SRR17216892 AMPLICON PRJNA788471 Saltmarsh 43.125N 70.868W USA: New Hampshire 2018-07 sediment 7883571 SAMN24002232 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216892 22407 SRR17216893 AMPLICON PRJNA788471 Saltmarsh 40.031N 74.08W USA: New Jersey 2018-06 sediment 7874810 SAMN24002231 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216893 21295 SRR1756784 AMPLICON PRJNA272558 Saltmarsh 24.61N 118.06E China not collected Spartina alterniflora Rhizoplane 9593250 SAMN03283754 PAIRED Illumina HiSeq 2000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR1756784 21308 SRR1756868 AMPLICON PRJNA272558 Saltmarsh 24.61N 118.06E China not collected Spartina alterniflora Rhizoplane 12738900 SAMN03283768 PAIRED Illumina HiSeq 2000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR1756868 21314 SRR1756929 AMPLICON PRJNA272558 Saltmarsh 24.61N 118.06E China not collected Spartina alterniflora Rhizoplane 9247500 SAMN03283774 PAIRED Illumina HiSeq 2000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR1756929 21324 SRR1756943 AMPLICON PRJNA272558 Saltmarsh 24.61N 118.06E China not collected Spartina alterniflora Rhizoplane 10311150 SAMN03283784 PAIRED Illumina HiSeq 2000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR1756943 21325 SRR1756944 AMPLICON PRJNA272558 Saltmarsh 24.61N 118.06E China not collected Spartina alterniflora Rhizoplane 16671450 SAMN03283785 PAIRED Illumina HiSeq 2000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR1756944 21327 SRR1756946 AMPLICON PRJNA272558 Saltmarsh 24.61N 118.06E China not collected Spartina alterniflora Rhizoplane 15395850 SAMN03283787 PAIRED Illumina HiSeq 2000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR1756946 21343 SRR1756968 AMPLICON PRJNA272558 Saltmarsh 24.61N 118.06E China not collected Spartina alterniflora Rhizoplane 14136000 SAMN03283806 PAIRED Illumina HiSeq 2000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR1756968 18790 SRR19630975 AMPLICON PRJNA847709 Mangrove 21.86333333N 108.5944444 E China 2025/06/20 Mangrove estuarine mud 42199598 SAMN28982405 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR19630975 22047 SRR22025456 AMPLICON PRJNA893704 Saltmarsh 38.76196N 76.38418W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 93777494 SAMN31431875 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025456 22082 SRR22025493 AMPLICON PRJNA893704 Saltmarsh 38.77305N 76.37802W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 57629974 SAMN31431842 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025493 22088 SRR22025499 AMPLICON PRJNA893704 Saltmarsh 38.77087N 76.38072W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 64577832 SAMN31431836 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025499 24355 SRR25047697 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-31 Zostera marina rhizosphere bulk sediment 49961184 SAMN36015138 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047697 24365 SRR25047734 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-31 Zostera marina rhizosphere bulk sediment 65847964 SAMN36015148 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047734 24368 SRR25047737 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-31 Zostera marina rhizosphere high hydrogen sulphide area 59956190 SAMN36015146 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047737 24370 SRR25047739 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-24 Zostera marina rhizosphere bulk sediment 48249096 SAMN36015124 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047739 24371 SRR25047740 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-31 Zostera marina rhizosphere bulk sediment 55562794 SAMN36015144 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047740 24376 SRR25047759 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere bulk sediment 63766248 SAMN36015172 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047759 24381 SRR25047764 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere high hydrogen sulphide area 48864942 SAMN36015170 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047764 24386 SRR25047769 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-24 Zostera marina rhizosphere bulk sediment 39730194 SAMN36015122 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047769 24388 SRR25047771 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere high hydrogen sulphide area 54390098 SAMN36015164 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047771 24391 SRR25047774 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-11 Zostera marina rhizosphere bulk sediment 37618980 SAMN36015161 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047774 24397 SRR25047780 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-31 Zostera marina rhizosphere high hydrogen sulphide area 61848276 SAMN36015134 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047780 24404 SRR25047813 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-24 Zostera marina rhizosphere bulk sediment 33550664 SAMN36015123 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047813 24405 SRR25047814 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-31 Zostera marina rhizosphere oxic area 48730094 SAMN36015132 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047814 22860 SRR5675625 AMPLICON PRJNA389390 Seagrass 54.57827 N 13.12357 E Germany:Baltic Sea 2015-08 Zostera marina seawater 32378579 SAMN07197187 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR5675625 15850 SRR5814388 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 82473348 SAMN07338412 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814388 16083 SRR5877326 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 101556560 SAMN06834391 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5877326 16089 SRR5877332 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 82257115 SAMN06834440 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5877332 16099 SRR5877342 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 59271944 SAMN06834451 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5877342 16111 SRR5877354 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 85676951 SAMN06834427 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5877354 16120 SRR5877363 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 127043707 SAMN06834402 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5877363 16135 SRR5877378 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 52158756 SAMN06834439 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5877378 16151 SRR5877394 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 63805051 SAMN06834465 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5877394 16322 SRR5880084 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 85676951 SAMN06834427 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5880084 16341 SRR5880103 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 59271944 SAMN06834451 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5880103 16376 SRR5880138 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 101556560 SAMN06834391 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5880138 16382 SRR5880144 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 63805051 SAMN06834465 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5880144 16416 SRR5880178 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 127043707 SAMN06834402 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5880178 16429 SRR5880192 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 82257115 SAMN06834440 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5880192 16430 SRR5880193 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 52158756 SAMN06834439 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5880193 22903 SRR6424044 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914474 E Taiwan 2015-02-15 seagrass root 46374468 SAMN08222587 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424044 22904 SRR6424045 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914476 E Taiwan 2015-02-15 seagrass rhizosphere 69284180 SAMN08222589 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424045 22910 SRR6424051 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914472 E Taiwan 2015-02-15 seagrass sediment 76136746 SAMN08222585 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424051 21092 SRR8931845 AMPLICON PRJNA533633 Saltmarsh 45.37N 123.96W USA: Marsh along Netarts Bay\, Oregon 2018-07-05 estuarine sediments 24199412 SAMN11463469 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8931845 21277 SRR9089761 AMPLICON PRJNA543559 Saltmarsh 30.97N 121.95E China:Shanghai 2017-06 salt marsh soil 41755322 SAMN11774855 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089761 21285 SRR9089771 AMPLICON PRJNA543559 Saltmarsh 30.87N 121.94E China:Shanghai 2017-03 salt marsh soil 38112620 SAMN11774862 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089771 16625 SRR9593089 AMPLICON PRJNA550512 Mangrove 6.8487778 N 101.00833 E Thailand 2018/04/01 Mud estuarine mud 55709593 SAMN12124990 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593089 16665 SRR9593129 AMPLICON PRJNA550512 Mangrove 6.8487778 N 101.00833 E Thailand 2018/04/01 Mud estuarine mud 38461708 SAMN12124990 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593129