# Export date: 2026-06-13 01:25:09 # Microbe: Rhodobium Rhodobium orientis (ID: 8123) # Total amplicons: 57 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 23102 SRR10060491 AMPLICON PRJNA563200 Seagrass 32.17 S 115.73 E Australia: Cockburn Sound 2018-10 Posidonia australis Posidonia australis 38515200 SAMN12670165 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR10060491 21371 SRR11232942 AMPLICON PRJNA602775 Saltmarsh 41.712N 69.9955W USA: Harwich\, MA Muddy Creek Marsh 2016-10-12 sediment 9059164 SAMN13950585 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11232942 21384 SRR11233079 AMPLICON PRJNA602775 Saltmarsh 41.7123N 69.9956W USA: Harwich\, MA Muddy Creek Marsh 2016-08-25 sediment 19026150 SAMN13950650 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233079 20853 SRR11233103 AMPLICON PRJNA602775 Saltmarsh 41.7123N 69.9957W USA: Harwich\, MA Muddy Creek Marsh 2016-10-12 sediment 7949486 SAMN13950542 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233103 21170 SRR11233120 AMPLICON PRJNA602775 Saltmarsh 41.123N 69.996W USA: Harwich\, MA Muddy Creek Marsh 2017-07 sediment 17193832 SAMN13950526 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233120 20865 SRR11233185 AMPLICON PRJNA602775 Saltmarsh 41.7387N 69.9699W USA: Orleans\, MA marsh off of Davis Road 2015-08-26 sediment 13414094 SAMN13950705 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233185 20888 SRR11233231 AMPLICON PRJNA602775 Saltmarsh 41.7387N 69.9699W USA: Orleans\, MA marsh off of Davis Road 2016-06-27 sediment 11249595 SAMN13950693 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233231 20894 SRR11233249 AMPLICON PRJNA602775 Saltmarsh 41.7399N 69.9688W USA: Orleans\, MA marsh off of Crows Landing 2015-06-07 sediment 5442832 SAMN13950677 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233249 23158 SRR11244467 AMPLICON PRJNA574590 Seagrass 20.15995 N 40.216967 E Saudi Arabia 2016-02-26 Thalassia hemprichii root 130978918 SAMN12860641 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11244467 23176 SRR11244485 AMPLICON PRJNA574590 Seagrass 19.270667 N 40.898117 E Saudi Arabia 2016-02-28 Thalassia hemprichii Rhizome 52472321 SAMN12860678 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11244485 23182 SRR11244491 AMPLICON PRJNA574590 Seagrass 19.960217 N 40.15495 E Saudi Arabia 2016-02-26 Thalassia hemprichii leaf 43165113 SAMN12860673 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11244491 23192 SRR11244501 AMPLICON PRJNA574590 Seagrass 25.704017 N 36.568083 E Saudi Arabia 2016-02-21 Halophila decipiens root 70896875 SAMN12860665 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11244501 23193 SRR11244502 AMPLICON PRJNA574590 Seagrass 25.361683 N 36.910917 E Saudi Arabia 2016-02-22 Halodule uninervis root 60259469 SAMN12860638 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11244502 23326 SRR11249256 AMPLICON PRJNA610593 Seagrass 19.270667 N 40.898117 E Saudi Arabia 2016-02 Thalassia hemprichii root 9012080854 SAMN14306712 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11249256 15790 SRR11310758 AMPLICON PRJNA612579 Mangrove 21.5 N 111.01 E China: Dianbai 2019/04/25 mangrove mangrove plant 39004572 SAMN14377379 PAIRED Illumina MiniSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR11310758 15792 SRR11310760 AMPLICON PRJNA612579 Mangrove 21.5 N 111.01 E China: Dianbai 2019/04/25 mangrove mangrove plant 36716976 SAMN14377377 PAIRED Illumina MiniSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR11310760 16597 SRR11392222 AMPLICON PRJNA613787 Mangrove 21.5 N 111.01 E China: Dianbai 2019/04/25 Mangrove mangrove plant 39004572 SAMN14419950 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11392222 21414 SRR12995213 AMPLICON PRJNA666636 Saltmarsh 31.38894N 81.27755W USA: Georgia 2018-07-10 Sporobolus alterniflorus plant 43815062 SAMN16678238 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995213 21496 SRR12995308 AMPLICON PRJNA666636 Saltmarsh 31.38892N 81.27632W USA: Georgia 2019-07-08 Sporobolus alterniflorus plant 40249356 SAMN16678309 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995308 21499 SRR12995311 AMPLICON PRJNA666636 Saltmarsh 31.38892N 81.27632W USA: Georgia 2019-07-08 Sporobolus alterniflorus plant 38612836 SAMN16678306 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995311 14995 SRR13291651 AMPLICON PRJNA685020 Mangrove 21.510783 N 110.010353 E China: Maoming 2019/04/25 Mangrove mangrove root 39004572 SAMN17075151 PAIRED Illumina HiSeq 2500 GENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR13291651 15002 SRR13291660 AMPLICON PRJNA685020 Mangrove 21.510783 N 110.010353 E China: Maoming 2019/04/25 Mangrove mangrove root 36716976 SAMN17075143 PAIRED Illumina HiSeq 2500 GENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR13291660 15005 SRR13291664 AMPLICON PRJNA685020 Mangrove 21.510783 N 110.010353 E China: Maoming 2019/04/25 Mangrove mangrove root 39949898 SAMN17075139 PAIRED Illumina HiSeq 2500 GENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR13291664 15149 SRR14740836 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 60716400 SAMN19581171 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740836 15220 SRR14740907 AMPLICON PRJNA735404 Mangrove 5.534833 N 102.944331 E Malaysia: Merang 2017/03/07 Sonneratia alba and Avicennia alba Sediment 99138600 SAMN19581107 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740907 14873 SRR15928190 AMPLICON PRJNA764039 Mangrove 16.3862 S 145.5638 E Australia: GBR 2018/05/27 coral coral 84506236 SAMN21466984 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR15928190 24026 SRR19242056 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Yongxing Island 2021-01 seagrass seawater 50508000 SAMN28462872 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242056 17762 SRR21291233 AMPLICON PRJNA874590 Mangrove 14.60000278N 61.01000000 W Martinique:Cohe du Lamentin 2025/06/18 Mangrove sediment 25570824 SAMN30556393 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR21291233 17769 SRR21291240 AMPLICON PRJNA874590 Mangrove 14.60000278N 61.01000000 W Martinique:Cohe du Lamentin 2025/06/18 Mangrove sediment 12264438 SAMN30556387 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR21291240 17676 SRR23961226 AMPLICON PRJNA774281 Mangrove 25.10140942 N 80.43864199 W USA: Florida Keys\, Florida 1905/07/06 Mangrove plant matter 38557615 SAMN33844849 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR23961226 22709 SRR26898568 AMPLICON PRJNA1042847 Seagrass NA China: Qinhuangdao 2022-09 seagrass seagrass leaf 41619000 SAMN38338616 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR26898568 18409 SRR27644502 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 10174380 SAMN39505298 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644502 18415 SRR27644508 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 26640326 SAMN39505292 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644508 18422 SRR27644515 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 20987792 SAMN39505286 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644515 18431 SRR27644524 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/23 Mangrove soil 9885064 SAMN39505468 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644524 18511 SRR27644604 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 4839550 SAMN39505367 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644604 18547 SRR27644640 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 14181618 SAMN39505259 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644640 18592 SRR27644685 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/23 Mangrove soil 11521904 SAMN39505351 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644685 18623 SRR27644716 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/21 Mangrove soil 13464368 SAMN39505409 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644716 18627 SRR27644720 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 9853354 SAMN39505406 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644720 18636 SRR27644729 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 2062056 SAMN39505201 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644729 18646 SRR27644739 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 10130288 SAMN39505389 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644739 18656 SRR27644749 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 9439312 SAMN39505322 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644749 18658 SRR27644751 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 5411236 SAMN39505320 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644751 17790 SRR4858369 AMPLICON PRJNA351850 Mangrove 21.67 N 88.15 E India:West Bengal'' 2014/07/25 bacterioplankton Mooriganga estuary in Sundarbans mangrove ecoregion 561760176 SAMN05954869 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR4858369 16098 SRR5877341 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 67685828 SAMN06834450 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5877341 16158 SRR5877401 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 81849891 SAMN06834462 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5877401 16288 SRR5879063 AMPLICON PRJNA339628 Mangrove 16.20 N 41.24 E Saudi Arabia: Farasan 2025/03/15 Mangrove Sediment 107499334 SAMN06834631 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5879063 16349 SRR5880111 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 67685828 SAMN06834450 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5880111 16379 SRR5880141 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 81849891 SAMN06834462 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5880141 16982 SRR6200783 AMPLICON PRJNA415044 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove sediment 31776225 SAMN07813336 PAIRED Illumina MiSeq METAGENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR6200783 21935 SRR6398183 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.38376006W USA 2013-07-07 Salt marsh sediment 8176702 SAMN08214147 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398183 21941 SRR6398189 AMPLICON PRJNA423244 Saltmarsh 41.35178N 70.38376W USA 2013-07-07 Salt marsh sediment 4426097 SAMN08214108 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398189 21945 SRR6398195 AMPLICON PRJNA423244 Saltmarsh 41.35174N 70.38376W USA 2013-07-07 Salt marsh sediment 11920222 SAMN08214110 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398195 22133 SRR6761095 AMPLICON PRJNA433990 Saltmarsh 29.927599N 88.829308W USA: Chandeleur Islands 2017-02-23 salt marsh sediment 273563248 SAMN08536657 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6761095 23036 SRR7828615 AMPLICON PRJNA490600 Seagrass NA China:Bohai Bay 2018-04-20 seagrass sediment 21991060 SAMN10053381 SINGLE Illumina HiSeq 3000 GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR7828615 16612 SRR9593076 AMPLICON PRJNA550512 Mangrove 6.8328889 N 101.000333 E Thailand 2018/04/01 Mud estuarine mud 56355281 SAMN12124993 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593076