# Export date: 2026-06-15 08:50:17 # Microbe: Rhodoplanes (ID: 8223) # Total amplicons: 69 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 23309 SRR10723729 AMPLICON PRJNA595452 Seagrass NA China:Hainan\,Tanmen 2016-07-20 seagrass sediment 48230000 SAMN13567210 PAIRED Illumina HiSeq 2500 GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR10723729 20895 SRR11233251 AMPLICON PRJNA602775 Saltmarsh 41.123N 69.996W USA: Harwich\, MA Muddy Creek Marsh 2015-08-19 sediment 18192590 SAMN13950641 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233251 23326 SRR11249256 AMPLICON PRJNA610593 Seagrass 19.270667 N 40.898117 E Saudi Arabia 2016-02 Thalassia hemprichii root 9012080854 SAMN14306712 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11249256 23328 SRR11249258 AMPLICON PRJNA610593 Seagrass 39.313109 N 2.98877 E Spain 2019-02 Posidonia oceanica root 6382569697 SAMN14306704 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11249258 21611 SRR11772251 AMPLICON PRJNA631747 Saltmarsh 42.78594979N 70.83731232W USA 2016 Sporobolus alterniflorus sediment 5081028422 SAMN14891083 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11772251 16693 SRR12070301 AMPLICON PRJNA640402 Mangrove China:Shenzhen 2019/01/12 Mangrove soil sample 93116750 SAMN15317501 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12070301 16697 SRR12070309 AMPLICON PRJNA640402 Mangrove China:Shenzhen 2019/01/12 Mangrove soil sample 83428452 SAMN15317503 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12070309 14967 SRR12164897 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 84254830 SAMN15447452 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164897 14969 SRR12164899 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 94159904 SAMN15447450 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164899 14972 SRR12164902 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 99418125 SAMN15447430 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164902 15030 SRR12164912 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 88607299 SAMN15447438 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164912 20624 SRR12228834 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 554476500 SAMN10953576 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228834 20630 SRR12228840 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 96120000 SAMN10953571 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228840 20632 SRR12228844 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 175354000 SAMN10953567 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228844 20902 SRR12852709 AMPLICON PRJNA670253 Saltmarsh 30.05833N 89.79194W USA: New Orleans\, LA 2018-06-15 sediment 52012359 SAMN16490727 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852709 20705 SRR13380059 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-06 Salt marsh sediment 35292325 SAMN17251777 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380059 15131 SRR14740818 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba mangrove sediment 67216800 SAMN19581187 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740818 15133 SRR14740820 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba mangrove sediment 64954200 SAMN19581185 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740820 15172 SRR14740859 AMPLICON PRJNA735404 Mangrove 5.884847 N 102.481745 E Malaysia: Tok Bali 2017/03/07 Sonneratia alba and Avicennia alba Sediment 74587800 SAMN19581151 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740859 15174 SRR14740861 AMPLICON PRJNA735404 Mangrove 5.884847 N 102.481745 E Malaysia: Tok Bali 2017/03/07 Sonneratia alba and Avicennia alba Sediment 108997800 SAMN19581149 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740861 15175 SRR14740862 AMPLICON PRJNA735404 Mangrove 5.884847 N 102.481745 E Malaysia: Tok Bali 2017/03/07 Sonneratia alba and Avicennia alba Sediment 99717000 SAMN19581148 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740862 15178 SRR14740865 AMPLICON PRJNA735404 Mangrove 5.884847 N 102.481745 E Malaysia: Tok Bali 2017/03/07 Sonneratia alba and Avicennia alba Sediment 105283200 SAMN19581145 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740865 15179 SRR14740866 AMPLICON PRJNA735404 Mangrove 5.884847 N 102.481745 E Malaysia: Tok Bali 2017/03/07 Sonneratia alba and Avicennia alba Sediment 87639600 SAMN19581144 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740866 15183 SRR14740870 AMPLICON PRJNA735404 Mangrove 5.884847 N 102.481745 E Malaysia: Tok Bali 2017/03/07 Sonneratia alba and Avicennia alba Sediment 123038400 SAMN19581141 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740870 15457 SRR14741147 AMPLICON PRJNA735404 Mangrove 1.410703 N 103.991095 E Malaysia: Chek Jawa 2017/03/07 Sonneratia alba and Avicennia alba Sediment 82485600 SAMN19581351 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741147 15540 SRR14741230 AMPLICON PRJNA735404 Mangrove 6.456892 N 99.822607 E Malaysia: Langkawi 2017/03/07 Sonneratia alba and Avicennia alba Sediment 61162800 SAMN19581275 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741230 15547 SRR14741237 AMPLICON PRJNA735404 Mangrove 6.456892 N 99.822607 E Malaysia: Langkawi 2017/03/07 Sonneratia alba and Avicennia alba Sediment 76476600 SAMN19581269 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741237 15593 SRR14741283 AMPLICON PRJNA735404 Mangrove 2.408307 N 101.858851 E Malaysia: Port Dickson 2017/03/07 Sonneratia alba and Avicennia alba Sediment 62618400 SAMN19581228 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741283 15598 SRR14741288 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Sediment 66333000 SAMN19580900 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741288 15609 SRR14741299 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Sediment 53766000 SAMN19580899 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741299 15717 SRR14741407 AMPLICON PRJNA735404 Mangrove 5.752590 N 102.999397 E Malaysia: Redang 2017/03/07 Sonneratia alba and Avicennia alba Sediment 59975400 SAMN19581475 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741407 14838 SRR15928155 AMPLICON PRJNA764039 Mangrove 16.3862 S 145.5638 E Australia: GBR 2018/08/21 coral coral 86149614 SAMN21467016 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR15928155 18898 SRR18349723 AMPLICON PRJNA817083 Mangrove 25.42 N 67.1 E Pakistan: Lasbela 2019/01/12 Mangrove mangrove sediments 109849775 SAMN26747216 PAIRED Illumina HiSeq 2500 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR18349723 18902 SRR18349727 AMPLICON PRJNA817083 Mangrove Pakistan: Lasbela Mangrove mangrove sediments 128518742 SAMN26747204 PAIRED Illumina HiSeq 2500 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR18349727 17994 SRR23945133 AMPLICON PRJNA947804 Mangrove 12.83774 S 45.190182 E Mayotte: Dembeni 2025/11/18 marine biofilm Slimy biofilm on Rhizopoha 12511001 SAMN33866977 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR23945133 18362 SRR25047475 AMPLICON PRJNA988256 Mangrove 1.3802 N 103.9486 E Singapore: Pasir Ris Park 2021/08/13 plastic plastic 79446542 SAMN36011598 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047475 16855 SRR26222186 AMPLICON PRJNA1021532 Mangrove 15.2933 N 73.4958 E India 2020/08/05 Mangrove mangrove sediment 871077000 SAMN37558049 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR26222186 22155 SRR27176327 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 bottomland hardwood forest soil 48971716 SAMN38763946 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176327 22210 SRR27176389 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal typha marsh soil 37512024 SAMN38763933 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176389 22245 SRR27176427 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal shrub marsh soil 41533758 SAMN38763980 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176427 22280 SRR27176470 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 bottomland hardwood forest soil 40578532 SAMN38763963 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176470 18414 SRR27644507 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 10428966 SAMN39505293 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644507 18457 SRR27644550 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 15265798 SAMN39505254 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644550 18461 SRR27644554 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/23 Mangrove soil 19329510 SAMN39505250 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644554 18491 SRR27644584 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 24095070 SAMN39505385 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644584 18499 SRR27644592 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 12848288 SAMN39505378 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644592 18525 SRR27644618 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 19426452 SAMN39505279 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644618 18566 SRR27644659 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 16657716 SAMN39505432 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644659 18571 SRR27644664 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 16491012 SAMN39505428 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644664 18595 SRR27644688 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 6782920 SAMN39505214 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644688 18650 SRR27644743 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 16393466 SAMN39505328 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644743 18653 SRR27644746 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 13690868 SAMN39505325 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644746 16853 SRR28031533 AMPLICON PRJNA1077244 Mangrove 24.803064 N 37.180672 E Saudi Arabia: Umlij 2022/12/03 Avicennia marina Rizospher soil 91456800 SAMN39961992 PAIRED DNBSEQ-G400 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR28031533 22315 SRR28820995 AMPLICON PRJNA1105352 Saltmarsh 30.14N 89.37W USA:Louisiana 2020-12-28 salt marsh soil 115393768 SAMN41100884 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR28820995 22340 SRR28821026 AMPLICON PRJNA1105352 Saltmarsh 30.14N 89.37W USA:Louisiana 2020-12-16 salt marsh soil 147812672 SAMN41100814 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR28821026 22348 SRR28821035 AMPLICON PRJNA1105352 Saltmarsh 30.14N 89.37W USA:Louisiana 2020-12-14 salt marsh soil 232016218 SAMN41100806 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR28821035 22358 SRR28821080 AMPLICON PRJNA1105352 Saltmarsh 30.14N 89.37W USA:Louisiana 2020-12-16 salt marsh soil 143417470 SAMN41100836 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR28821080 22384 SRR28821124 AMPLICON PRJNA1105352 Saltmarsh 30.14N 89.37W USA:Louisiana 2021-01-19 salt marsh soil 40022766 SAMN41100912 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR28821124 15831 SRR5814359 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 69427435 SAMN07338403 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814359 17569 SRR5814369 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 63115563 SAMN07338385 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR5814369 15859 SRR5814402 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 65923215 SAMN07338396 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814402 16277 SRR5879052 AMPLICON PRJNA339628 Mangrove 16.20 N 41.24 E Saudi Arabia: Farasan 2025/03/15 Mangrove Sediment 53309798 SAMN06834711 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5879052 17053 SRR6200854 AMPLICON PRJNA415044 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove sediment 28927295 SAMN07813360 PAIRED Illumina MiSeq METAGENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR6200854 21774 SRR7877461 AMPLICON PRJNA491859 Saltmarsh 42.7488N 70.5811W USA: Rough Meadows Marsh\, Rowley\, Massachusetts 2015-11-07 Salt marsh sediment 57151472 SAMN10092200 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR7877461 21780 SRR7877467 AMPLICON PRJNA491859 Saltmarsh 42.0387N 70.2048W USA: West End Marsh\, Provincetown\, Massachusetts 2016-08-01 Salt marsh sediment 27183520 SAMN10092106 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR7877467 21787 SRR7877474 AMPLICON PRJNA491859 Saltmarsh 42.0387N 70.2048W USA: West End Marsh\, Provincetown\, Massachusetts 2016-08-01 Salt marsh sediment 43383001 SAMN10092101 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR7877474 21797 SRR7877486 AMPLICON PRJNA491859 Saltmarsh 42.7488N 70.5811W USA: Rough Meadows Marsh\, Rowley\, Massachusetts 2015-06-26 Salt marsh sediment 44503625 SAMN10092058 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR7877486 21868 SRR7877564 AMPLICON PRJNA491859 Saltmarsh 42.7488N 70.5811W USA: Rough Meadows Marsh\, Rowley\, Massachusetts 2015-06-26 Salt marsh sediment 43285965 SAMN10092065 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR7877564 21067 SRR8931076 AMPLICON PRJNA533745 Saltmarsh 48.15N 134.61E China: Sanjiang wetland 2017-12-12T10:10:00Z soil 22702016 SAMN11465908 PAIRED Illumina HiSeq 2000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8931076