# Export date: 2026-06-14 02:36:20 # Microbe: Ruegeria_B_490092 Ruegeria_B_490092 conchae (ID: 8359) # Total amplicons: 69 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 22461 DRR403376 AMPLICON PRJDB14309 Seagrass 35.314831 N 139.787622 E Japan:Chiba\, Futsu 2019-09-30 seagrass Seagrass seawater 63897951 SAMD00532462 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/DRR403376 22473 DRR403388 AMPLICON PRJDB14309 Seagrass 35.314831 N 139.787622 E Japan:Chiba\, Futsu 2019-09-30 seagrass Seagrass leaf 76911329 SAMD00532474 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/DRR403388 22481 DRR403396 AMPLICON PRJDB14309 Seagrass 35.314831 N 139.787622 E Japan:Chiba\, Futsu 2019-09-30 seagrass Seagrass root 82588388 SAMD00532482 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/DRR403396 23312 SRR10723732 AMPLICON PRJNA595452 Seagrass NA China:Hainan\,Xincun 2016-07-24 seagrass sediment 22419500 SAMN13567226 PAIRED Illumina HiSeq 2500 GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR10723732 23213 SRR11244522 AMPLICON PRJNA574590 Seagrass 27.969433 N 35.200967 E Saudi Arabia 2016-02-20 Halophila stipulacea Rhizome 54452142 SAMN12860646 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11244522 15789 SRR11310757 AMPLICON PRJNA612579 Mangrove 21.5 N 111.01 E China: Dianbai 2019/04/25 mangrove mangrove soil 36448164 SAMN14377362 PAIRED Illumina MiniSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR11310757 15800 SRR11310768 AMPLICON PRJNA612579 Mangrove 21.5 N 111.01 E China: Dianbai 2019/04/24 mangrove mangrove soil 34009674 SAMN14377361 PAIRED Illumina MiniSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR11310768 16595 SRR11392220 AMPLICON PRJNA613787 Mangrove 21.5 N 111.01 E China: Dianbai 2019/04/25 Mangrove mangrove soil 36448164 SAMN14419942 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11392220 16598 SRR11392223 AMPLICON PRJNA613787 Mangrove 21.5 N 111.01 E China: Dianbai 2019/04/24 Mangrove mangrove soil 34009674 SAMN14419941 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11392223 23498 SRR11742186 AMPLICON PRJNA630066 Seagrass 29.89545 N 88.82778 W USA: Chandeleur Islands\, Lousiana 2015-09-21 seagrass sediment 59819285 SAMN14819914 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11742186 21611 SRR11772251 AMPLICON PRJNA631747 Saltmarsh 42.78594979N 70.83731232W USA 2016 Sporobolus alterniflorus sediment 5081028422 SAMN14891083 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11772251 19920 SRR12033732 AMPLICON PRJNA639819 Seaweed 42.59N 6.1E France: Porquerolles island south 2017/05/01 Rocky_surface Seawater 45954000 SAMN15250132 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12033732 15009 SRR13291670 AMPLICON PRJNA685020 Mangrove 21.510783 N 110.010353 E China: Maoming 2019/04/25 Mangrove mangrove root-associated soil 36448164 SAMN17075116 PAIRED Illumina HiSeq 2500 GENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR13291670 16739 SRR13291681 AMPLICON PRJNA685020 Mangrove 21.510783 N 110.010353 E China: Maoming 2019/04/25 Mangrove mangrove root-associated soil 34009674 SAMN17075115 PAIRED Illumina HiSeq 2500 GENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR13291681 23716 SRR15068626 AMPLICON PRJNA744715 Seagrass 37.2 N 122.34 E China:Weihai 2019-06 Zostera japonica sediment 161980752 SAMN20115030 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR15068626 23743 SRR15068653 AMPLICON PRJNA744715 Seagrass 37.2 N 122.34 E China:Weihai 2019-06 Zostera japonica sediment 180332429 SAMN20115023 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR15068653 14809 SRR15928126 AMPLICON PRJNA764039 Mangrove 16.3862 S 145.5638 E Australia: GBR 2018/11/21 coral coral 70727249 SAMN21467042 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR15928126 14878 SRR15928195 AMPLICON PRJNA764039 Mangrove 16.3862 S 145.5638 E Australia: GBR 2018/05/27 coral coral 79482525 SAMN21466979 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR15928195 14910 SRR15928227 AMPLICON PRJNA764039 Mangrove 16.3862 S 145.5638 E Australia: GBR 2019/02/19 coral coral 93923688 SAMN21467054 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR15928227 23979 SRR19242009 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Xincun 2021-04 seagrass seawater 41281000 SAMN28462915 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242009 23982 SRR19242012 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Xincun 2021-04 seagrass seawater 34922000 SAMN28462912 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242012 23990 SRR19242020 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Tanmen 2021-04 seagrass seawater 35781000 SAMN28462905 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242020 23991 SRR19242021 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Tanmen 2021-04 seagrass seawater 35364000 SAMN28462904 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242021 24000 SRR19242030 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Yongxing Island 2021-04 seagrass seawater 37787000 SAMN28462896 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242030 24001 SRR19242031 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Yongxing Island 2021-04 seagrass seawater 34635500 SAMN28462895 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242031 24011 SRR19242041 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Xincun 2021-01 seagrass seawater 49587000 SAMN28462886 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242041 24014 SRR19242044 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Tanmen 2021-01 seagrass seawater 49933500 SAMN28462883 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242044 24015 SRR19242045 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Tanmen 2021-01 seagrass seawater 53971500 SAMN28462882 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242045 24017 SRR19242047 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Tanmen 2021-01 seagrass seawater 50675000 SAMN28462880 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242047 24018 SRR19242048 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Tanmen 2020-08 seagrass seawater 43370500 SAMN28462835 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242048 24019 SRR19242049 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Tanmen 2021-01 seagrass seawater 47968500 SAMN28462879 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242049 24021 SRR19242051 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Tanmen 2021-01 seagrass seawater 50144500 SAMN28462877 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242051 24032 SRR19242062 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Xincun 2020-11 seagrass seawater 55771000 SAMN28462867 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242062 24050 SRR19242080 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Yongxing Island 2020-11 seagrass seawater 47539000 SAMN28462850 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242080 24053 SRR19242083 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Yongxing Island 2020-11 seagrass seawater 47372500 SAMN28462848 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242083 24058 SRR19242088 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Xincun 2020-08 seagrass seawater 33853000 SAMN28462843 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242088 20542 SRR19745556 AMPLICON PRJNA850096 Seaweed China:Putian 2019/12/10 after seaweed culture estuarine water 50846136 SAMN29155017 PAIRED Illumina HiSeq 4000 METAGENOMIC 16s/18s https://www.ncbi.nlm.nih.gov/sra/SRR19745556 20539 SRR19745590 AMPLICON PRJNA850096 Seaweed China:Putian 2019/12/10 after seaweed culture estuarine water 55374440 SAMN29155020 PAIRED Illumina HiSeq 4000 METAGENOMIC 16s/18s https://www.ncbi.nlm.nih.gov/sra/SRR19745590 24165 SRR23829620 AMPLICON PRJNA944167 Seagrass 8.160796 S 115.024 E Indonesia: Bali 2011-06 Syringodium isoetifolium plant 28411992 SAMN33739208 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23829620 24327 SRR23829782 AMPLICON PRJNA944167 Seagrass 8.26874 S 124.40135 E Indonesia: Alor 2011-06 Syringodium isoetifolium plant 28682892 SAMN33739198 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23829782 18189 SRR25047302 AMPLICON PRJNA988256 Mangrove 1.2130 N 103.7569 E Singapore: Semakau 2021/09/07 plastic plastic 58763026 SAMN36011660 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047302 18195 SRR25047308 AMPLICON PRJNA988256 Mangrove 1.2257 N 103.7464 E Singapore: Pulau Hantu Besar 2021/09/14 sediment sediment 54300400 SAMN36011589 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047308 18196 SRR25047309 AMPLICON PRJNA988256 Mangrove 1.2257 N 103.7464 E Singapore: Pulau Hantu Besar 2021/09/14 sediment sediment 58504768 SAMN36011588 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047309 18200 SRR25047313 AMPLICON PRJNA988256 Mangrove 1.2257 N 103.7464 E Singapore: Pulau Hantu Besar 2021/09/14 plastic plastic 71638602 SAMN36011584 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047313 18205 SRR25047318 AMPLICON PRJNA988256 Mangrove 1.2263 N 103.7478 E Singapore: Pulau Hantu Besar 2021/07/29 seawater seawater 58782290 SAMN36011580 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047318 18236 SRR25047349 AMPLICON PRJNA988256 Mangrove 1.3752 N 104.0062 E Singapore: Changi Beach 2021/07/26 seawater seawater 69108396 SAMN36011519 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047349 18247 SRR25047360 AMPLICON PRJNA988256 Mangrove 1.3166 N 103.9834 E Singapore: Tanah Merah 2021/07/13 seawater seawater 62516496 SAMN36011734 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047360 18248 SRR25047361 AMPLICON PRJNA988256 Mangrove 1.3166 N 103.9834 E Singapore: Tanah Merah 2021/07/13 seawater seawater 55111896 SAMN36011733 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047361 18263 SRR25047376 AMPLICON PRJNA988256 Mangrove 1.2160 N 103.8314 E Singapore: Small Sister's Island 2021/09/09 sediment sediment 50585458 SAMN36011720 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047376 18266 SRR25047379 AMPLICON PRJNA988256 Mangrove 1.2160 N 103.8314 E Singapore: Small Sister's Island 2021/09/09 plastic plastic 67316844 SAMN36011717 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047379 18271 SRR25047384 AMPLICON PRJNA988256 Mangrove 1.2160 N 103.8314 E Singapore: Small Sister's Island 2021/09/09 plastic plastic 41644554 SAMN36011712 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047384 18327 SRR25047440 AMPLICON PRJNA988256 Mangrove 1.1607 N 103.7407 E Singapore: Raffles Lighthouse 2021/09/07 plastic plastic 59325896 SAMN36011630 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047440 18335 SRR25047448 AMPLICON PRJNA988256 Mangrove 1.4101 N 103.9907 E Singapore: Pulau Ubin Chek Jawa 2021/07/15 plastic plastic 63802970 SAMN36011622 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047448 18387 SRR25047500 AMPLICON PRJNA988256 Mangrove 1.2256 N 103.8605 E Singapore: Kusu Island 2021/09/09 sediment sediment 61264336 SAMN36011543 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047500 18394 SRR25047507 AMPLICON PRJNA988256 Mangrove 1.2256 N 103.8605 E Singapore: Kusu Island 2021/09/09 plastic plastic 39372606 SAMN36011537 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047507 18396 SRR25047509 AMPLICON PRJNA988256 Mangrove 1.2256 N 103.8605 E Singapore: Kusu Island 2021/09/09 plastic plastic 40971518 SAMN36011535 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047509 22697 SRR26898556 AMPLICON PRJNA1042847 Seagrass NA China: Qinhuangdao 2022-09 seagrass seagrass leaf 41406500 SAMN38338622 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR26898556 22705 SRR26898564 AMPLICON PRJNA1042847 Seagrass NA China: Qinhuangdao 2022-09 seagrass seagrass root 42323000 SAMN38338628 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR26898564 20401 SRR26913607 AMPLICON PRJNA1043828 Seaweed 33.9921S 151.2312E Australia: New South Wales\, Sydney\, Bare Island 2020/03/01 Delisea pulchra host associated 97483909 SAMN38354151 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR26913607 20405 SRR26913611 AMPLICON PRJNA1043828 Seaweed 33.9921S 151.2312E Australia: New South Wales\, Sydney\, Bare Island 2020/03/01 Delisea pulchra host associated 73929303 SAMN38354147 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR26913611 20419 SRR26913625 AMPLICON PRJNA1043828 Seaweed 33.9921S 151.2312E Australia: New South Wales\, Sydney\, Bare Island 2020/03/01 Delisea pulchra host associated 114426012 SAMN38354145 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR26913625 20428 SRR26913634 AMPLICON PRJNA1043828 Seaweed 33.9921S 151.2312E Australia: New South Wales\, Sydney\, Bare Island 2020/03/01 Delisea pulchra host associated 58104679 SAMN38354154 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR26913634 18585 SRR27644678 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 1610868 SAMN39505358 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644678 18689 SRR27798479 AMPLICON PRJNA1071512 Mangrove 32.371 N 64.694 W Bermuda: Ferry Reach 2020/10/30 Mangrove sediment 15683906 SAMN39692014 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27798479 18733 SRR27798523 AMPLICON PRJNA1071512 Mangrove 32.371 N 64.694 W Bermuda: Ferry Reach 2020/11/01 Mangrove sediment 14361914 SAMN39692018 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27798523 20494 SRR27942810 AMPLICON PRJNA1074237 Seaweed 33.056N 35.1019E Israel: Achziv littoral 2022/05/26 Spyridia sp. host associated 18145974 SAMN39854519 PAIRED Illumina MiniSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27942810 20497 SRR27942813 AMPLICON PRJNA1074237 Seaweed 33.056N 35.1019E Israel: Achziv littoral 2022/05/26 Dictyota sp. host associated 18752706 SAMN39854516 PAIRED Illumina MiniSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27942813 20515 SRR27942831 AMPLICON PRJNA1074237 Seaweed 33.056N 35.1019E Israel: Achziv littoral 2022/05/26 Sarconema sp. host associated 18288760 SAMN39854491 PAIRED Illumina MiniSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27942831 17448 SRR7585575 AMPLICON PRJNA415044 Mangrove 22.20 N 39.17 E Saudi Arabia: Thuwal 2025/05/17 Mangrove Sediment 67583297 SAMN09700239 PAIRED Illumina MiSeq METAGENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR7585575