# Export date: 2026-06-15 12:06:05 # Microbe: Phaeospirillum (ID: 8412) # Total amplicons: 65 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 15803 SRR11296451 AMPLICON PRJNA612127 Mangrove 6.8494 N 101.0166 E Thailand 2018/04/01 Avicennia officinalis and Rhizophora apiculata Blume rhizosphere of mangrove tree 49687802 SAMN14363798 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR11296451 15808 SRR11296456 AMPLICON PRJNA612127 Mangrove 6.8494 N 101.0166 E Thailand 2018/04/01 Avicennia officinalis and Rhizophora apiculata Blume rhizosphere of mangrove tree 45231963 SAMN14363797 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR11296456 15809 SRR11296457 AMPLICON PRJNA612127 Mangrove 6.8494 N 101.0166 E Thailand 2018/04/01 Avicennia officinalis and Rhizophora apiculata Blume rhizosphere of mangrove tree 16255466 SAMN14363796 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR11296457 21611 SRR11772251 AMPLICON PRJNA631747 Saltmarsh 42.78594979N 70.83731232W USA 2016 Sporobolus alterniflorus sediment 5081028422 SAMN14891083 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11772251 16699 SRR12070311 AMPLICON PRJNA640402 Mangrove China:Shenzhen 2018/07/17 Mangrove soil sample 89306368 SAMN15317493 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12070311 20616 SRR12228798 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus maritimus rhizosphere 133311500 SAMN10953563 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228798 20623 SRR12228832 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 110630000 SAMN10953578 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228832 20624 SRR12228834 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 554476500 SAMN10953576 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228834 20625 SRR12228835 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 123993000 SAMN10953575 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228835 20626 SRR12228836 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus alterniflorus rhizosphere 206085000 SAMN10953557 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228836 20627 SRR12228837 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 106605500 SAMN10953574 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228837 20629 SRR12228839 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 59373500 SAMN10953572 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228839 20630 SRR12228840 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 96120000 SAMN10953571 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228840 20632 SRR12228844 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 175354000 SAMN10953567 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228844 20634 SRR12228846 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus maritimus rhizosphere 63238500 SAMN10953565 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228846 14927 SRR12400124 AMPLICON PRJNA650560 Mangrove 13.83692 S 39.33435 W Brazil: Juliana River basin 2025/02/20 Mangrove mangrove sediment 98301057 SAMN15718361 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12400124 14928 SRR12400125 AMPLICON PRJNA650560 Mangrove 13.83692 S 39.33435 W Brazil: Juliana River basin 2025/02/20 Mangrove mangrove sediment 97654572 SAMN15718360 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12400125 20908 SRR12852721 AMPLICON PRJNA670253 Saltmarsh 30.37222N 88.40556W USA: Moss Point\, MS 2018-06-18 sediment 69771600 SAMN16490912 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852721 21211 SRR12852722 AMPLICON PRJNA670253 Saltmarsh 30.37222N 88.40556W USA: Moss Point\, MS 2018-06-18 sediment 51763921 SAMN16490911 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852722 20913 SRR12852730 AMPLICON PRJNA670253 Saltmarsh 30.05833N 89.79194W USA: New Orleans\, LA 2018-06-15 sediment 45901623 SAMN16490724 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852730 21239 SRR12852809 AMPLICON PRJNA670253 Saltmarsh 31.33944N 81.46722W USA: Darien\, GA 2018-06-23 sediment 54186492 SAMN16490833 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852809 20966 SRR12852833 AMPLICON PRJNA670253 Saltmarsh 30.09861N 84.14806W USA: St. Marks\, FL 2018-06-19 sediment 5404436 SAMN16490787 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852833 24091 SRR21686197 AMPLICON PRJNA881797 Seagrass NA China: Binzhou 2022-07-30 Seagrass root_soil 64866292 SAMN30916014 PAIRED Illumina NovaSeq 6000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR21686197 24093 SRR21686199 AMPLICON PRJNA881797 Seagrass NA China: Binzhou 2022-07-30 Seagrass surrounding_water 71742928 SAMN30916025 PAIRED Illumina NovaSeq 6000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR21686199 24096 SRR21686202 AMPLICON PRJNA881797 Seagrass NA China: Binzhou 2022-07-30 Seagrass surrounding_water 72800802 SAMN30916022 PAIRED Illumina NovaSeq 6000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR21686202 24097 SRR21686203 AMPLICON PRJNA881797 Seagrass NA China: Binzhou 2022-07-30 Seagrass surrounding_water 67355650 SAMN30916021 PAIRED Illumina NovaSeq 6000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR21686203 24099 SRR21686205 AMPLICON PRJNA881797 Seagrass NA China: Binzhou 2022-07-30 Seagrass root_soil 64035838 SAMN30916011 PAIRED Illumina NovaSeq 6000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR21686205 17979 SRR23945118 AMPLICON PRJNA947804 Mangrove 12.841432S 45.184514 E Mayotte: Dembeni 2025/11/18 marine biofilm Large blue-green benthic biolfilm 10507221 SAMN33866967 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR23945118 18212 SRR25047325 AMPLICON PRJNA988256 Mangrove 1.2663 N 103.8010 E Singapore: Labrador Park 2021/07/12 seawater seawater 64116612 SAMN36011573 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047325 16856 SRR26222187 AMPLICON PRJNA1021532 Mangrove 15.2958 N 73.4911 E India 2020/08/05 Mangrove mangrove sediment 1049480500 SAMN37558048 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR26222187 22154 SRR27176326 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 bottomland hardwood forest soil 84517418 SAMN38763947 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176326 22175 SRR27176351 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal juncus marsh soil 46677120 SAMN38763909 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176351 22184 SRR27176361 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 bottomland hardwood forest soil 41336854 SAMN38763885 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176361 22206 SRR27176385 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal typha marsh soil 44583656 SAMN38763937 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176385 22207 SRR27176386 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal typha marsh soil 40294350 SAMN38763936 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176386 22241 SRR27176423 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal shrub marsh soil 26374566 SAMN38763983 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176423 22249 SRR27176433 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 bottomland hardwood forest soil 56133646 SAMN38763960 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176433 22252 SRR27176436 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 bottomland hardwood forest soil 58216540 SAMN38763957 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176436 22263 SRR27176448 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal juncus marsh soil 46666852 SAMN38763901 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176448 22264 SRR27176449 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal typha marsh soil 64196744 SAMN38763865 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176449 22265 SRR27176450 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal juncus marsh soil 40731646 SAMN38763900 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176450 22267 SRR27176452 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal juncus marsh soil 39757394 SAMN38763898 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176452 22273 SRR27176461 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal typha marsh soil 46309284 SAMN38763872 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176461 22313 SRR28820992 AMPLICON PRJNA1105352 Saltmarsh 30.14N 89.37W USA:Louisiana 2021-01-05 salt marsh soil 84416052 SAMN41100887 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR28820992 22329 SRR28821011 AMPLICON PRJNA1105352 Saltmarsh 30.14N 89.37W USA:Louisiana 2020-12-22 salt marsh soil 168201810 SAMN41100855 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR28821011 22348 SRR28821035 AMPLICON PRJNA1105352 Saltmarsh 30.14N 89.37W USA:Louisiana 2020-12-14 salt marsh soil 232016218 SAMN41100806 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR28821035 22358 SRR28821080 AMPLICON PRJNA1105352 Saltmarsh 30.14N 89.37W USA:Louisiana 2020-12-16 salt marsh soil 143417470 SAMN41100836 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR28821080 22367 SRR28821106 AMPLICON PRJNA1105352 Saltmarsh 30.14N 89.37W USA:Louisiana 2021-02-01 salt marsh soil 72755914 SAMN41100957 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR28821106 16937 SRR5482642 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 12259589 SAMN06819209 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5482642 16939 SRR5482644 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 13694155 SAMN06819207 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5482644 16122 SRR5877365 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 91251692 SAMN06834400 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5877365 16418 SRR5880180 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 91251692 SAMN06834400 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5880180 20399 SRR740788 AMPLICON PRJNA189174 Seaweed 8.466667N 77.683333E India: Karankadu coastal region\, Palk Bay 2011/08/01 256062900 SAMN01919424 PAIRED Illumina Genome Analyzer IIx METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR740788 21054 SRR8931062 AMPLICON PRJNA533745 Saltmarsh 48.15N 134.61E China: Sanjiang wetland 2017-12-12T10:40:00Z soil 17615209 SAMN11465914 PAIRED Illumina HiSeq 2000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8931062 21055 SRR8931063 AMPLICON PRJNA533745 Saltmarsh 48.15N 134.61E China: Sanjiang wetland 2017-12-12T10:00:00Z soil 26218707 SAMN11465906 PAIRED Illumina HiSeq 2000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8931063 21065 SRR8931074 AMPLICON PRJNA533745 Saltmarsh 48.15N 134.61E China: Sanjiang wetland 2017-12-12T10:35:00Z soil 26319463 SAMN11465913 PAIRED Illumina HiSeq 2000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8931074 21067 SRR8931076 AMPLICON PRJNA533745 Saltmarsh 48.15N 134.61E China: Sanjiang wetland 2017-12-12T10:10:00Z soil 22702016 SAMN11465908 PAIRED Illumina HiSeq 2000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8931076 15125 SRR9213685 AMPLICON PRJNA543557 Mangrove 9.59 N 76.11 E India:Mangalavanam Mangroves 2017/10/01 Puthuvype and Mangalavanam Sediment samples are collected from Mangalavanam mangrove region 184626200 SAMN11772330 PAIRED Illumina HiSeq 4000 METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9213685 16623 SRR9593087 AMPLICON PRJNA550512 Mangrove 6.8552222 N 100.95597 E Thailand 2017/12/04 Mud estuarine mud 85553827 SAMN12124986 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593087 16626 SRR9593090 AMPLICON PRJNA550512 Mangrove 6.8552222 N 100.95597 E Thailand 2017/12/04 Mud estuarine mud 83283018 SAMN12124986 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593090 16653 SRR9593117 AMPLICON PRJNA550512 Mangrove 6.8487778 N 101.00833 E Thailand 2017/12/04 Mud estuarine mud 133118514 SAMN12124989 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593117 16657 SRR9593121 AMPLICON PRJNA550512 Mangrove 6.8487778 N 101.00833 E Thailand 2017/12/04 Mud estuarine mud 84154805 SAMN12124989 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593121