# Export date: 2026-06-15 12:06:06 # Microbe: Rhodospira (ID: 8419) # Total amplicons: 70 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 15055 SRR10393008 AMPLICON PRJNA578400 Mangrove 18.3185583 N 64.7242358 W Virgin Islands: Southern Shore of St. John 2017/07/23 Seawater Northeastern Caribbean Seawater 48569504 SAMN13071670 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR10393008 21133 SRR11232909 AMPLICON PRJNA602775 Saltmarsh 41.7122N 69.9947W USA: Harwich\, MA Muddy Creek Marsh 2017-08 sediment 12194878 SAMN13950616 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11232909 21358 SRR11232910 AMPLICON PRJNA602775 Saltmarsh 41.7122N 69.9947W USA: Harwich\, MA Muddy Creek Marsh 2017-07 sediment 14281780 SAMN13950615 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11232910 21362 SRR11232922 AMPLICON PRJNA602775 Saltmarsh 41.7123N 69.9956W USA: Harwich\, MA Muddy Creek Marsh 2017-10-23 sediment 9214360 SAMN13950604 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11232922 20830 SRR11232944 AMPLICON PRJNA602775 Saltmarsh 41.712N 69.9955W USA: Harwich\, MA Muddy Creek Marsh 2017-07 sediment 23074293 SAMN13950583 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11232944 20832 SRR11232948 AMPLICON PRJNA602775 Saltmarsh 41.7399N 69.9694W USA: Orleans\, MA marsh off of Crows Landing 2017-08 sediment 22869111 SAMN13950492 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11232948 21382 SRR11233077 AMPLICON PRJNA602775 Saltmarsh 41.7396N 69.9691W USA: Orleans\, MA marsh off of Crows Landing 2017-08 sediment 15968565 SAMN13950499 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233077 20865 SRR11233185 AMPLICON PRJNA602775 Saltmarsh 41.7387N 69.9699W USA: Orleans\, MA marsh off of Davis Road 2015-08-26 sediment 13414094 SAMN13950705 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233185 21397 SRR11233187 AMPLICON PRJNA602775 Saltmarsh 41.7399N 69.9694W USA: Orleans\, MA marsh off of Crows Landing 2015-08-26 sediment 12926978 SAMN13950702 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233187 21185 SRR11233201 AMPLICON PRJNA602775 Saltmarsh 41.7119N 69.9954W USA: Harwich\, MA Muddy Creek Marsh 2015-08-19 sediment 6309271 SAMN13950575 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233201 21191 SRR11233224 AMPLICON PRJNA602775 Saltmarsh 41.7119N 69.9951W USA: Harwich\, MA Muddy Creek Marsh 2017-06 sediment 25900207 SAMN13950554 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233224 21398 SRR11233226 AMPLICON PRJNA602775 Saltmarsh 41.7119N 69.9951W USA: Harwich\, MA Muddy Creek Marsh 2017-07 sediment 14483943 SAMN13950556 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233226 20884 SRR11233227 AMPLICON PRJNA602775 Saltmarsh 41.7119N 69.9951W USA: Harwich\, MA Muddy Creek Marsh 2015-06-07 sediment 6713990 SAMN13950552 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233227 20887 SRR11233230 AMPLICON PRJNA602775 Saltmarsh 41.7399N 69.9694W USA: Orleans\, MA marsh off of Crows Landing 2017-06 sediment 24016257 SAMN13950489 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233230 23186 SRR11244495 AMPLICON PRJNA574590 Seagrass 20.15995 N 40.216967 E Saudi Arabia 2016-02-26 Thalassia hemprichii Rhizome 53388574 SAMN12860671 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11244495 23212 SRR11244521 AMPLICON PRJNA574590 Seagrass 19.960217 N 40.15495 E Saudi Arabia 2016-02-26 Halodule uninervis Rhizome 95103235 SAMN12860647 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11244521 23647 SRR12086834 AMPLICON PRJNA641753 Seagrass 37.85 N 119.1 E China:Dongying 2019-06 Spartina alterniflora sediment 304651991 SAMN15364577 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12086834 23657 SRR12086844 AMPLICON PRJNA641753 Seagrass 37.85 N 119.1 E China:Dongying 2019-06 Spartina alterniflora sediment 311232884 SAMN15364580 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12086844 20975 SRR12852846 AMPLICON PRJNA670253 Saltmarsh 29.62861N 85.09056W USA: Apalachicola\, FL 2018-06-20 sediment 5113183 SAMN16490775 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852846 20718 SRR13380074 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-05 Salt marsh sediment 73164482 SAMN17251928 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380074 23761 SRR18298282 AMPLICON PRJNA774145 Seagrass 19.5115 N 85.15176 E India 2018-04-21 seagrass sediment 17526611 SAMN22568704 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298282 23816 SRR18298337 AMPLICON PRJNA774145 Seagrass 19.527465 N 85.148345 E India 2018-04-26 seagrass sediment 5830083 SAMN22568816 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298337 23819 SRR18298340 AMPLICON PRJNA774145 Seagrass 19.532747 N 85.152704 E India 2018-04-26 seagrass sediment 3803711 SAMN22568813 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298340 23830 SRR18298351 AMPLICON PRJNA774145 Seagrass 19.540351 N 85.158805 E India 2018-04-26 seagrass sediment 2555429 SAMN22568803 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298351 23833 SRR18298354 AMPLICON PRJNA774145 Seagrass 19.544158 N 85.162298 E India 2018-04-26 seagrass sediment 4980082 SAMN22568799 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298354 23843 SRR18298364 AMPLICON PRJNA774145 Seagrass 19.55742 N 85.168557 E India 2018-04-26 seagrass sediment 12897934 SAMN22568788 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298364 23867 SRR18298388 AMPLICON PRJNA774145 Seagrass 19.51136 N 85.15342 E India 2018-04-21 seagrass sediment 6904757 SAMN22568857 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298388 23909 SRR18298430 AMPLICON PRJNA774145 Seagrass 19.562891 N 85.170926 E India 2018-04-26 seagrass sediment 12105708 SAMN22568785 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298430 23914 SRR18298435 AMPLICON PRJNA774145 Seagrass 19.569175 N 85.170855 E India 2018-04-26 seagrass sediment 22327393 SAMN22568780 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298435 23917 SRR18298438 AMPLICON PRJNA774145 Seagrass 19.574318 N 85.170321 E India 2018-04-26 seagrass sediment 20185687 SAMN22568776 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298438 23925 SRR18298446 AMPLICON PRJNA774145 Seagrass 19.586377 N 85.168426 E India 2018-04-26 seagrass sediment 8808154 SAMN22568766 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298446 23930 SRR18298451 AMPLICON PRJNA774145 Seagrass 19.59571 N 85.170016 E India 2018-04-26 seagrass sediment 23424765 SAMN22568760 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298451 23957 SRR18298478 AMPLICON PRJNA774145 Seagrass 19.62856 N 85.17197 E India 2019-03-14 seagrass sediment 12852470 SAMN22568736 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298478 23958 SRR18298479 AMPLICON PRJNA774145 Seagrass 19.62856 N 85.17197 E India 2019-03-14 seagrass sediment 15018638 SAMN22568737 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298479 23959 SRR18298480 AMPLICON PRJNA774145 Seagrass 19.62856 N 85.17197 E India 2019-03-14 seagrass sediment 17684595 SAMN22568738 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298480 24025 SRR19242055 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Yongxing Island 2021-01 seagrass seawater 50681000 SAMN28462873 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242055 17762 SRR21291233 AMPLICON PRJNA874590 Mangrove 14.60000278N 61.01000000 W Martinique:Cohe du Lamentin 2025/06/18 Mangrove sediment 25570824 SAMN30556393 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR21291233 17769 SRR21291240 AMPLICON PRJNA874590 Mangrove 14.60000278N 61.01000000 W Martinique:Cohe du Lamentin 2025/06/18 Mangrove sediment 12264438 SAMN30556387 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR21291240 22084 SRR22025495 AMPLICON PRJNA893704 Saltmarsh 38.76777N 76.37918W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 66986195 SAMN31431840 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025495 22095 SRR23933689 AMPLICON PRJNA925448 Saltmarsh 44.616826N 67.802903W USA: Harrington\, Maine 2021-08-14 marsh sediment 65510498 SAMN33188431 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23933689 17678 SRR23961228 AMPLICON PRJNA774281 Mangrove 25.128433 N 80.443574 W USA: Florida Keys\, Florida 1905/07/06 Mangrove plant matter 36073798 SAMN33844848 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR23961228 18409 SRR27644502 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 10174380 SAMN39505298 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644502 18410 SRR27644503 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 15766212 SAMN39505297 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644503 18415 SRR27644508 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 26640326 SAMN39505292 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644508 18446 SRR27644539 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 10438328 SAMN39505454 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644539 18511 SRR27644604 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 4839550 SAMN39505367 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644604 18547 SRR27644640 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 14181618 SAMN39505259 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644640 18553 SRR27644646 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 10446180 SAMN39505444 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644646 18555 SRR27644648 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 13483696 SAMN39505442 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644648 18567 SRR27644660 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 12135870 SAMN39505431 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644660 18573 SRR27644666 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 13623824 SAMN39505426 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644666 18592 SRR27644685 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/23 Mangrove soil 11521904 SAMN39505351 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644685 18626 SRR27644719 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 9038860 SAMN39505407 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644719 18627 SRR27644720 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 9853354 SAMN39505406 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644720 18648 SRR27644741 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 3109392 SAMN39505388 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644741 18658 SRR27644751 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 5411236 SAMN39505320 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644751 18675 SRR27644768 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 13507856 SAMN39505305 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644768 21687 SRR5360915 AMPLICON PRJNA379357 Saltmarsh 53.76191N 7.72333E Germany: Spiekeroog 2015 Salt marsh sediment 144342196 SAMN06606323 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360915 21912 SRR6398158 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.38378W USA 2013-07-07 Salt marsh sediment 13380045 SAMN08214122 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398158 21916 SRR6398162 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.3837604W USA 2013-07-07 Salt marsh sediment 6609904 SAMN08214136 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398162 21918 SRR6398165 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.3837609W USA 2013-07-07 Salt marsh sediment 11428301 SAMN08214141 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398165 21928 SRR6398175 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.383769W USA 2013-07-07 Salt marsh sediment 5747452 SAMN08214132 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398175 21929 SRR6398176 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.383762W USA 2013-07-07 Salt marsh sediment 12102626 SAMN08214125 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398176 21933 SRR6398181 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.38376008W USA 2013-07-07 Salt marsh sediment 7609187 SAMN08214149 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398181 21940 SRR6398188 AMPLICON PRJNA423244 Saltmarsh 41.35171N 70.38376W USA 2013-07-07 Salt marsh sediment 13962225 SAMN08214113 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398188 21941 SRR6398189 AMPLICON PRJNA423244 Saltmarsh 41.35178N 70.38376W USA 2013-07-07 Salt marsh sediment 4426097 SAMN08214108 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398189 21944 SRR6398194 AMPLICON PRJNA423244 Saltmarsh 41.35173N 70.38376W USA 2013-07-07 Salt marsh sediment 16591133 SAMN08214111 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398194 21945 SRR6398195 AMPLICON PRJNA423244 Saltmarsh 41.35174N 70.38376W USA 2013-07-07 Salt marsh sediment 11920222 SAMN08214110 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398195