# Export date: 2026-06-15 15:11:27 # Microbe: Croceicoccus_484963 Croceicoccus naphthovorans (ID: 8525) # Total amplicons: 68 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 21606 SRR10200302 AMPLICON PRJNA574840 Saltmarsh 29.895448N 88.82778W USA: Chandeleur Islands 2018-05-07 salt marsh sediment 25228500 SAMN12869905 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10200302 21371 SRR11232942 AMPLICON PRJNA602775 Saltmarsh 41.712N 69.9955W USA: Harwich\, MA Muddy Creek Marsh 2016-10-12 sediment 9059164 SAMN13950585 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11232942 23648 SRR12086835 AMPLICON PRJNA641753 Seagrass 37.85 N 119.1 E China:Dongying 2019-06 Spartina alterniflora sediment 291127669 SAMN15364576 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12086835 20619 SRR12228814 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus alterniflorus rhizosphere 61578500 SAMN10953559 PAIRED Illumina MiSeq METAGENOMIC ITS https://www.ncbi.nlm.nih.gov/sra/SRR12228814 20627 SRR12228837 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 106605500 SAMN10953574 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228837 20629 SRR12228839 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 59373500 SAMN10953572 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228839 20632 SRR12228844 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 175354000 SAMN10953567 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228844 21204 SRR12852706 AMPLICON PRJNA670253 Saltmarsh 30.05833N 89.79194W USA: New Orleans\, LA 2018-06-15 sediment 119611310 SAMN16490730 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852706 20905 SRR12852714 AMPLICON PRJNA670253 Saltmarsh 30.3778N 87.83778W USA: Weeks Bay\, AL 2018-06-18 sediment 52065075 SAMN16490918 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852714 21212 SRR12852728 AMPLICON PRJNA670253 Saltmarsh 37.415258N 76.714539W USA: Gloucester Point\, VA 2018-06-29 sediment 19891809 SAMN16490905 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852728 21413 SRR12995212 AMPLICON PRJNA666636 Saltmarsh 31.38914N 81.27642W USA: Georgia 2019-07-08 Sporobolus alterniflorus plant 43984738 SAMN16678312 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995212 21414 SRR12995213 AMPLICON PRJNA666636 Saltmarsh 31.38894N 81.27755W USA: Georgia 2018-07-10 Sporobolus alterniflorus plant 43815062 SAMN16678238 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995213 21449 SRR12995253 AMPLICON PRJNA666636 Saltmarsh 31.38894N 81.27755W USA: Georgia 2018-07-10 Sporobolus alterniflorus plant 38693156 SAMN16678259 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995253 21455 SRR12995262 AMPLICON PRJNA666636 Saltmarsh 31.3893N 81.27705W USA: Georgia 2018-07-10 Sporobolus alterniflorus plant 42917988 SAMN16678251 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995262 21485 SRR12995294 AMPLICON PRJNA666636 Saltmarsh 31.38894N 81.27755W USA: Georgia 2019-07-08 Sporobolus alterniflorus sediment 37341772 SAMN16678278 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995294 21491 SRR12995303 AMPLICON PRJNA666636 Saltmarsh 31.3893N 81.27705W USA: Georgia 2018-07-10 Sporobolus alterniflorus plant 47296432 SAMN16678270 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995303 21496 SRR12995308 AMPLICON PRJNA666636 Saltmarsh 31.38892N 81.27632W USA: Georgia 2019-07-08 Sporobolus alterniflorus plant 40249356 SAMN16678309 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995308 21526 SRR12995341 AMPLICON PRJNA666636 Saltmarsh 31.9744N 81.0308W USA: Georgia 2019-07-22 Sporobolus alterniflorus plant 48682454 SAMN16678381 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995341 21533 SRR12995349 AMPLICON PRJNA666636 Saltmarsh 31.9754N 81.03147W USA: Georgia 2019-07-22 Sporobolus alterniflorus plant 42265388 SAMN16678373 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995349 21540 SRR12995356 AMPLICON PRJNA666636 Saltmarsh 31.9728N 81.0309W USA: Georgia 2019-07-22 Sporobolus alterniflorus sediment 58555288 SAMN16678367 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995356 21551 SRR12995367 AMPLICON PRJNA666636 Saltmarsh 31.97435N 81.03093W USA: Georgia 2019-07-22 Sporobolus alterniflorus sediment 45740232 SAMN16678357 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995367 21558 SRR12995374 AMPLICON PRJNA666636 Saltmarsh 31.9754N 81.03147W USA: Georgia 2019-07-22 Sporobolus alterniflorus sediment 45045966 SAMN16678351 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995374 21564 SRR12995380 AMPLICON PRJNA666636 Saltmarsh 31.38904N 81.27569W USA: Georgia 2019-07-08 Sporobolus alterniflorus plant 41057074 SAMN16678345 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995380 21569 SRR12995387 AMPLICON PRJNA666636 Saltmarsh 31.38914N 81.27642W USA: Georgia 2019-07-08 Sporobolus alterniflorus plant 42833150 SAMN16678339 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995387 21584 SRR12995403 AMPLICON PRJNA666636 Saltmarsh 31.38894N 81.27755W USA: Georgia 2019-07-08 Sporobolus alterniflorus plant 44457622 SAMN16678324 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995403 21590 SRR12995409 AMPLICON PRJNA666636 Saltmarsh 31.38904N 81.27569W USA: Georgia 2019-07-08 Sporobolus alterniflorus plant 38328704 SAMN16678319 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995409 16718 SRR13291635 AMPLICON PRJNA685020 Mangrove 21.510783 N 110.010353 E China: Maoming 2019/04/25 Mangrove mangrove root-associated soil 32880662 SAMN17075123 PAIRED Illumina HiSeq 2500 GENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR13291635 20665 SRR13380016 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-04 Salt marsh sediment 18850031 SAMN17251901 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380016 20678 SRR13380029 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 64472104 SAMN17251818 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380029 20679 SRR13380030 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 38645248 SAMN17251817 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380030 20696 SRR13380049 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 12409361 SAMN17251771 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380049 20697 SRR13380050 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 30057650 SAMN17251770 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380050 20699 SRR13380052 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 32007889 SAMN17251768 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380052 20708 SRR13380062 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-06 Salt marsh sediment 30982034 SAMN17251774 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380062 20709 SRR13380063 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-06 Salt marsh sediment 37883305 SAMN17251773 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380063 20740 SRR13380104 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-07 Salt marsh sediment 25597555 SAMN17251780 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380104 20767 SRR13380133 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 32115236 SAMN17251868 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380133 20778 SRR13380144 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-07 Salt marsh sediment 32332429 SAMN17251827 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380144 14954 SRR15606924 AMPLICON PRJNA757625 Mangrove 22.5286 N 114.0028 E China 2025/05/20 Mangrove mangrove sidiments 42376586 SAMN20969812 PAIRED Illumina MiSeq OTHER 16S https://www.ncbi.nlm.nih.gov/sra/SRR15606924 14958 SRR15606928 AMPLICON PRJNA757625 Mangrove 22.5286 N 114.0028 E China 2025/05/20 Mangrove mangrove sidiments 44148874 SAMN20969822 PAIRED Illumina MiSeq OTHER 16S https://www.ncbi.nlm.nih.gov/sra/SRR15606928 14961 SRR15606931 AMPLICON PRJNA757625 Mangrove 22.5286 N 114.0028 E China 2025/05/20 Mangrove mangrove sidiments 27732334 SAMN20969811 PAIRED Illumina MiSeq OTHER 16S https://www.ncbi.nlm.nih.gov/sra/SRR15606931 14962 SRR15606932 AMPLICON PRJNA757625 Mangrove 22.5286 N 114.0028 E China 2025/05/20 Mangrove mangrove sidiments 44399306 SAMN20969810 PAIRED Illumina MiSeq OTHER https://www.ncbi.nlm.nih.gov/sra/SRR15606932 24088 SRR21686194 AMPLICON PRJNA881797 Seagrass NA China: Binzhou 2022-07-30 Seagrass Bulk_soil 54534506 SAMN30916017 PAIRED Illumina NovaSeq 6000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR21686194 18169 SRR25047282 AMPLICON PRJNA988256 Mangrove 1.2147 N 103.7586 E Singapore: Semakau 2021/08/25 plastic plastic 86849336 SAMN36011678 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047282 18255 SRR25047368 AMPLICON PRJNA988256 Mangrove 1.3166 N 103.9834 E Singapore: Tanah Merah 2021/07/13 plastic plastic 50083992 SAMN36011727 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047368 18359 SRR25047472 AMPLICON PRJNA988256 Mangrove 1.3802 N 103.9486 E Singapore: Pasir Ris Park 2021/08/13 sediment sediment 57952132 SAMN36011601 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047472 18361 SRR25047474 AMPLICON PRJNA988256 Mangrove 1.3802 N 103.9486 E Singapore: Pasir Ris Park 2021/08/13 plastic plastic 63064316 SAMN36011599 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047474 18363 SRR25047476 AMPLICON PRJNA988256 Mangrove 1.3802 N 103.9486 E Singapore: Pasir Ris Park 2021/08/13 plastic plastic 62875890 SAMN36011597 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047476 18389 SRR25047502 AMPLICON PRJNA988256 Mangrove 1.2198 N 103.8506 E Singapore: Bendera Bay 2021/08/11 plastic plastic 68534690 SAMN36011497 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047502 18395 SRR25047508 AMPLICON PRJNA988256 Mangrove 1.2256 N 103.8605 E Singapore: Kusu Island 2021/09/09 plastic plastic 38279374 SAMN36011536 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047508 18047 SRR25728277 AMPLICON PRJNA1007244 Mangrove 20.244806S 106.572972 E Viet Nam: Nam Dinh 2025/04/19 Kandelia obovata estuarine mud 44632280 SAMN37055103 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR25728277 18123 SRR25728353 AMPLICON PRJNA1007244 Mangrove 20.2445S 106.572611 E Viet Nam: Nam Dinh 2025/04/19 Kandelia obovata estuarine mud 39741632 SAMN37055106 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR25728353 18129 SRR25728359 AMPLICON PRJNA1007244 Mangrove 20.245306S 106.573139 E Viet Nam: Nam Dinh 2025/04/19 Kandelia obovata estuarine mud 41232184 SAMN37055100 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR25728359 21622 SRR26165207 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 9220485 SAMN37494725 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165207 18457 SRR27644550 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 15265798 SAMN39505254 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644550 17313 SRR5724695 AMPLICON PRJNA390570 Mangrove 15.30 N 73.51 E India: Goa 2015/02/05 Mangrove soil 187321508 SAMN06675415 PAIRED Illumina HiSeq 2500 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5724695 15827 SRR5814354 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 73059406 SAMN07338402 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814354 15831 SRR5814359 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 69427435 SAMN07338403 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814359 15850 SRR5814388 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 82473348 SAMN07338412 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814388 16135 SRR5877378 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 52158756 SAMN06834439 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5877378 16430 SRR5880193 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 52158756 SAMN06834439 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5880193 16996 SRR6200797 AMPLICON PRJNA415044 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove sediment 53257650 SAMN07813349 PAIRED Illumina MiSeq METAGENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR6200797 21884 SRR6371054 AMPLICON PRJNA422172 Saltmarsh 37.79N 119.14E China 2017-10-04 Salt marsh soils 33318894 SAMN08166673 PAIRED Illumina MiniSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR6371054 21035 SRR8207353 AMPLICON PRJNA505917 Saltmarsh 42.76N 70.89W USA: Plum Island Estuary 2016-03-09 Spartina alterniflora sediment 14553505 SAMN10439474 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8207353 21047 SRR8207366 AMPLICON PRJNA505917 Saltmarsh 42.76N 70.89W USA: Plum Island Estuary 2016-03-09 Spartina alterniflora sediment 15454514 SAMN10439465 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8207366 21048 SRR8207367 AMPLICON PRJNA505917 Saltmarsh 42.76N 70.89W USA: Plum Island Estuary 2016-03-09 Spartina alterniflora sediment 17834695 SAMN10439462 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8207367 21050 SRR8207369 AMPLICON PRJNA505917 Saltmarsh 42.76N 70.89W USA: Plum Island Estuary 2016-03-09 Spartina alterniflora sediment 17521742 SAMN10439460 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8207369