# Export date: 2026-06-15 22:51:09 # Microbe: Sphingomicrobium_484090 Sphingomicrobium arenosum (ID: 8638) # Total amplicons: 55 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 21597 SRR10200251 AMPLICON PRJNA574840 Saltmarsh 29.895448N 88.82778W USA: Chandeleur Islands 2018-05-07 salt marsh sediment 34071500 SAMN12869873 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10200251 21599 SRR10200273 AMPLICON PRJNA574840 Saltmarsh 29.895448N 88.82778W USA: Chandeleur Islands 2018-05-07 salt marsh sediment 57315000 SAMN12869853 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10200273 20868 SRR11233195 AMPLICON PRJNA602775 Saltmarsh 41.776N 69.9412W USA: Orleans\, MA marsh at end of Sparrowhawk Road 2016-06-27 sediment 8048777 SAMN13950695 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233195 21611 SRR11772251 AMPLICON PRJNA631747 Saltmarsh 42.78594979N 70.83731232W USA 2016 Sporobolus alterniflorus sediment 5081028422 SAMN14891083 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11772251 20905 SRR12852714 AMPLICON PRJNA670253 Saltmarsh 30.3778N 87.83778W USA: Weeks Bay\, AL 2018-06-18 sediment 52065075 SAMN16490918 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852714 21207 SRR12852715 AMPLICON PRJNA670253 Saltmarsh 30.3778N 87.83778W USA: Weeks Bay\, AL 2018-06-18 sediment 27301595 SAMN16490917 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852715 21212 SRR12852728 AMPLICON PRJNA670253 Saltmarsh 37.415258N 76.714539W USA: Gloucester Point\, VA 2018-06-29 sediment 19891809 SAMN16490905 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852728 21011 SRR12852905 AMPLICON PRJNA670253 Saltmarsh 29.171337N 83.025477W USA: Cedar Key\, FL 2018-06-21 sediment 4666296 SAMN16490816 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852905 21477 SRR12995286 AMPLICON PRJNA666636 Saltmarsh 31.38983N 81.27757W USA: Georgia 2019-07-08 Sporobolus alterniflorus sediment 43222702 SAMN16678285 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995286 20691 SRR13380043 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-05 Salt marsh sediment 3229064 SAMN17251785 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380043 15149 SRR14740836 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 60716400 SAMN19581171 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740836 15160 SRR14740847 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 50351400 SAMN19581162 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740847 15163 SRR14740850 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Leaf 52245000 SAMN19581159 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740850 15198 SRR14740885 AMPLICON PRJNA735404 Mangrove 5.884847 N 102.481745 E Malaysia: Tok Bali 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 68585400 SAMN19581127 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740885 15200 SRR14740887 AMPLICON PRJNA735404 Mangrove 5.884847 N 102.481745 E Malaysia: Tok Bali 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 89355000 SAMN19581125 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740887 15247 SRR14740934 AMPLICON PRJNA735404 Mangrove 5.534833 N 102.944331 E Malaysia: Merang 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 105391200 SAMN19581083 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740934 15250 SRR14740937 AMPLICON PRJNA735404 Mangrove 5.534833 N 102.944331 E Malaysia: Merang 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 93231000 SAMN19581080 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740937 15280 SRR14740967 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 46706400 SAMN19580883 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740967 15286 SRR14740973 AMPLICON PRJNA735404 Mangrove 1.211727 N 103.758781 E Malaysia: Semakau 2017/03/07 Sonneratia alba and Avicennia alba Fruit 59517000 SAMN19581048 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740973 15313 SRR14741000 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 51080400 SAMN19580880 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741000 15324 SRR14741011 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 51758400 SAMN19580879 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741011 15335 SRR14741022 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 50083200 SAMN19580878 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741022 15341 SRR14741028 AMPLICON PRJNA735404 Mangrove 1.410703 N 103.991095 E Malaysia: Chek Jawa 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 45609000 SAMN19580998 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741028 15346 SRR14741033 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 57053400 SAMN19580877 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741033 15524 SRR14741214 AMPLICON PRJNA735404 Mangrove 1.445826 N 103.767778 E Malaysia: Lim Chu Kang 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 48198600 SAMN19581290 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741214 15546 SRR14741236 AMPLICON PRJNA735404 Mangrove 6.456892 N 99.822607 E Malaysia: Langkawi 2017/03/07 Sonneratia alba and Avicennia alba Sediment 70542000 SAMN19581270 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741236 15547 SRR14741237 AMPLICON PRJNA735404 Mangrove 6.456892 N 99.822607 E Malaysia: Langkawi 2017/03/07 Sonneratia alba and Avicennia alba Sediment 76476600 SAMN19581269 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741237 15635 SRR14741325 AMPLICON PRJNA735404 Mangrove 1.445826 N 103.707778 E Malaysia: Lim Chu Kang 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 50580600 SAMN19580962 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741325 15636 SRR14741326 AMPLICON PRJNA735404 Mangrove 1.445826 N 103.707778 E Malaysia: Lim Chu Kang 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 45430800 SAMN19580961 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741326 15637 SRR14741327 AMPLICON PRJNA735404 Mangrove 1.445826 N 103.707778 E Malaysia: Lim Chu Kang 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 44937000 SAMN19580960 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741327 15639 SRR14741329 AMPLICON PRJNA735404 Mangrove 1.445826 N 103.707778 E Malaysia: Lim Chu Kang 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 56216400 SAMN19580958 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741329 15640 SRR14741330 AMPLICON PRJNA735404 Mangrove 1.445826 N 103.707778 E Malaysia: Lim Chu Kang 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 51363600 SAMN19580957 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741330 15663 SRR14741353 AMPLICON PRJNA735404 Mangrove 6.456892 N 99.822607 E Malaysia: Langkawi 2017/03/07 Sonneratia alba and Avicennia alba Sediment 51834600 SAMN19580936 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741353 15664 SRR14741354 AMPLICON PRJNA735404 Mangrove 6.456892 N 99.822607 E Malaysia: Langkawi 2017/03/07 Sonneratia alba and Avicennia alba Sediment 52866600 SAMN19580935 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741354 15694 SRR14741384 AMPLICON PRJNA735404 Mangrove 5.884847 N 102.481745 E Malaysia: Tok Bali 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 44394000 SAMN19581496 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741384 14849 SRR15928166 AMPLICON PRJNA764039 Mangrove 16.3862 S 145.5638 E Australia: GBR 2018/07/01 coral coral 33102607 SAMN21467006 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR15928166 17804 SRR17658321 AMPLICON PRJNA798089 Mangrove 33.8469058S 151.2024254 E Australia: Sawmillers Reserve\, Sydney 2018/12/19 marine biofilm biofilm 50439119 SAMN25078434 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR17658321 24030 SRR19242060 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Xincun 2020-11 seagrass seawater 46339000 SAMN28462869 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242060 22044 SRR22025451 AMPLICON PRJNA893704 Saltmarsh 38.74663N 76.37007W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 78184478 SAMN31431880 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025451 17990 SRR23945129 AMPLICON PRJNA947804 Mangrove 12.842133S 45.18656 E Mayotte: Dembeni 2025/11/18 marine biofilm Biofilm on a pneumatophore 11878851 SAMN33866981 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR23945129 18159 SRR25047272 AMPLICON PRJNA988256 Mangrove 1.2153 N 103.7582 E Singapore: Semakau 2021/08/24 plastic plastic 59907428 SAMN36011687 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047272 18232 SRR25047345 AMPLICON PRJNA988256 Mangrove 1.2592 N 103.7564 E Singapore: Cyrene Reef 2021/08/23 plastic plastic 67298182 SAMN36011522 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047345 18245 SRR25047358 AMPLICON PRJNA988256 Mangrove 1.3102 N 103.9814 E Singapore: Tanah Merah 2021/07/19 plastic plastic 54163144 SAMN36011736 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047358 18310 SRR25047423 AMPLICON PRJNA988256 Mangrove 1.4450 N 103.7335 E Singapore: Sungei Buloh Wetland Reserve 2021/07/27 plastic plastic 98973014 SAMN36011645 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047423 18366 SRR25047479 AMPLICON PRJNA988256 Mangrove 1.3802 N 103.9486 E Singapore: Pasir Ris Park 2021/08/13 plastic plastic 64954596 SAMN36011594 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047479 18389 SRR25047502 AMPLICON PRJNA988256 Mangrove 1.2198 N 103.8506 E Singapore: Bendera Bay 2021/08/11 plastic plastic 68534690 SAMN36011497 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047502 18038 SRR25728268 AMPLICON PRJNA1007244 Mangrove 20.243389S 106.574778 E Viet Nam: Nam Dinh 2025/08/19 Kandelia obovata estuarine mud 57369998 SAMN37055133 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR25728268 18671 SRR27644764 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 13423296 SAMN39505210 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644764 18134 SRR28477583 AMPLICON PRJNA1089480 Mangrove 15.511852S 73.8626 E India 2023/09/12 Mangrove Mangrove Litter 69084236 SAMN40540549 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR28477583 15849 SRR5814387 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 74984860 SAMN07338409 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814387 16362 SRR5880124 AMPLICON PRJNA339628 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove Sediment 87835716 SAMN06834474 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5880124 16639 SRR9593103 AMPLICON PRJNA550512 Mangrove 6.9493889 N 100.826722 E Thailand 2018/04/01 Mud estuarine mud 56325182 SAMN12124978 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593103 16640 SRR9593104 AMPLICON PRJNA550512 Mangrove 6.9493889 N 100.826722 E Thailand 2018/04/01 Mud estuarine mud 53085658 SAMN12124978 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593104 16651 SRR9593115 AMPLICON PRJNA550512 Mangrove 6.8552222 N 100.95597 E Thailand 2018/04/01 Mud estuarine mud 7157700 SAMN12124987 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593115 16656 SRR9593120 AMPLICON PRJNA550512 Mangrove 6.8487778 N 101.00833 E Thailand 2017/12/04 Mud estuarine mud 99978713 SAMN12124989 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593120