# Export date: 2026-06-15 12:35:47 # Microbe: Thioploca Thioploca ingrica (ID: 8718) # Total amplicons: 65 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 22559 ERR7421901 AMPLICON PRJEB48899 Seagrass NA Cymodocea nodosa sediment 36995475 SAMEA11293278 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR7421901 22567 ERR7421909 AMPLICON PRJEB48899 Seagrass NA Cymodocea nodosa sediment 10650432 SAMEA11293286 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR7421909 22568 ERR7421910 AMPLICON PRJEB48899 Seagrass NA Cymodocea nodosa sediment 10634870 SAMEA11293287 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR7421910 22575 ERR7421917 AMPLICON PRJEB48899 Seagrass NA Cymodocea nodosa sediment 20686442 SAMEA11293294 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR7421917 22591 ERR7421933 AMPLICON PRJEB48899 Seagrass NA Cymodocea nodosa sediment 25198500 SAMEA11293310 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR7421933 22599 ERR7421941 AMPLICON PRJEB48899 Seagrass NA Cymodocea nodosa sediment 7430102 SAMEA11293318 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR7421941 23320 SRR10723740 AMPLICON PRJNA595452 Seagrass NA China:Hainan\,Xincun 2016-07-23 seagrass sediment 17988000 SAMN13567219 PAIRED Illumina HiSeq 2500 GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR10723740 14969 SRR12164899 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 94159904 SAMN15447450 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164899 21204 SRR12852706 AMPLICON PRJNA670253 Saltmarsh 30.05833N 89.79194W USA: New Orleans\, LA 2018-06-15 sediment 119611310 SAMN16490730 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852706 20902 SRR12852709 AMPLICON PRJNA670253 Saltmarsh 30.05833N 89.79194W USA: New Orleans\, LA 2018-06-15 sediment 52012359 SAMN16490727 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852709 20907 SRR12852719 AMPLICON PRJNA670253 Saltmarsh 30.05833N 89.79194W USA: New Orleans\, LA 2018-06-15 sediment 52116726 SAMN16490725 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852719 20913 SRR12852730 AMPLICON PRJNA670253 Saltmarsh 30.05833N 89.79194W USA: New Orleans\, LA 2018-06-15 sediment 45901623 SAMN16490724 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852730 20919 SRR12852742 AMPLICON PRJNA670253 Saltmarsh 30.05833N 89.79194W USA: New Orleans\, LA 2018-06-15 sediment 58102781 SAMN16490723 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852742 21238 SRR12852806 AMPLICON PRJNA670253 Saltmarsh 31.33944N 81.46722W USA: Darien\, GA 2018-06-23 sediment 68873090 SAMN16490835 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852806 20950 SRR12852807 AMPLICON PRJNA670253 Saltmarsh 31.33944N 81.46722W USA: Darien\, GA 2018-06-23 sediment 34565224 SAMN16490834 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852807 20953 SRR12852812 AMPLICON PRJNA670253 Saltmarsh 31.33944N 81.46722W USA: Darien\, GA 2018-06-23 sediment 46811344 SAMN16490830 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852812 20954 SRR12852813 AMPLICON PRJNA670253 Saltmarsh 31.33944N 81.46722W USA: Darien\, GA 2018-06-23 sediment 39816087 SAMN16490829 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852813 21421 SRR12995221 AMPLICON PRJNA666636 Saltmarsh 31.9728N 81.03062W USA: Georgia 2019-07-22 Sporobolus alterniflorus plant 44878800 SAMN16678413 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995221 21434 SRR12995237 AMPLICON PRJNA666636 Saltmarsh 31.97435N 81.03093W USA: Georgia 2019-07-22 Sporobolus alterniflorus plant 42659960 SAMN16678400 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995237 21442 SRR12995245 AMPLICON PRJNA666636 Saltmarsh 31.38866N 81.27693W USA: Georgia 2018-07-10 Sporobolus alterniflorus plant 43647394 SAMN16678266 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995245 21450 SRR12995254 AMPLICON PRJNA666636 Saltmarsh 31.38894N 81.27755W USA: Georgia 2018-07-10 Sporobolus alterniflorus plant 39483806 SAMN16678258 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995254 21459 SRR12995266 AMPLICON PRJNA666636 Saltmarsh 31.38866N 81.27693W USA: Georgia 2018-07-10 Sporobolus alterniflorus plant 39567640 SAMN16678247 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995266 21460 SRR12995267 AMPLICON PRJNA666636 Saltmarsh 31.38866N 81.27693W USA: Georgia 2018-07-10 Sporobolus alterniflorus plant 41610278 SAMN16678246 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995267 21468 SRR12995276 AMPLICON PRJNA666636 Saltmarsh 31.38894N 81.27755W USA: Georgia 2018-07-10 Sporobolus alterniflorus plant 41500842 SAMN16678239 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995276 21474 SRR12995282 AMPLICON PRJNA666636 Saltmarsh 31.38914N 81.27642W USA: Georgia 2019-07-08 Sporobolus alterniflorus sediment 42782448 SAMN16678289 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995282 21497 SRR12995309 AMPLICON PRJNA666636 Saltmarsh 31.38892N 81.27632W USA: Georgia 2019-07-08 Sporobolus alterniflorus plant 44911430 SAMN16678308 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995309 21510 SRR12995325 AMPLICON PRJNA666636 Saltmarsh 31.9754N 81.03147W USA: Georgia 2019-07-22 Sporobolus alterniflorus plant 44891852 SAMN16678395 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995325 21515 SRR12995330 AMPLICON PRJNA666636 Saltmarsh 31.9728N 81.03062W USA: Georgia 2019-07-22 Sporobolus alterniflorus plant 40081688 SAMN16678391 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995330 21523 SRR12995338 AMPLICON PRJNA666636 Saltmarsh 31.97367N 81.03113W USA: Georgia 2019-07-22 Sporobolus alterniflorus plant 43740766 SAMN16678383 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995338 21528 SRR12995343 AMPLICON PRJNA666636 Saltmarsh 31.97435N 81.03093W USA: Georgia 2019-07-22 Sporobolus alterniflorus plant 44606716 SAMN16678379 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995343 21548 SRR12995364 AMPLICON PRJNA666636 Saltmarsh 31.97367N 81.03113W USA: Georgia 2019-07-22 Sporobolus alterniflorus sediment 42228742 SAMN16678360 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995364 21562 SRR12995378 AMPLICON PRJNA666636 Saltmarsh 31.38957N 81.27559W USA: Georgia 2019-07-08 Sporobolus alterniflorus plant 42026938 SAMN16678347 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995378 21573 SRR12995391 AMPLICON PRJNA666636 Saltmarsh 31.38892N 81.27632W USA: Georgia 2019-07-08 Sporobolus alterniflorus plant 41126350 SAMN16678335 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995391 21585 SRR12995404 AMPLICON PRJNA666636 Saltmarsh 31.39001N 81.2758W USA: Georgia 2019-07-08 Sporobolus alterniflorus plant 37291070 SAMN16678323 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995404 21590 SRR12995409 AMPLICON PRJNA666636 Saltmarsh 31.38904N 81.27569W USA: Georgia 2019-07-08 Sporobolus alterniflorus plant 38328704 SAMN16678319 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995409 20702 SRR13380056 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-04 Salt marsh sediment 21106072 SAMN17251809 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380056 15767 SRR14741457 AMPLICON PRJNA735404 Mangrove 1.211727 N 103.758781 E Malaysia: Semakau 2017/03/07 Sonneratia alba and Avicennia alba Sediment 61502400 SAMN19581431 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741457 17731 SRR21290760 AMPLICON PRJNA874575 Mangrove 12.84S 45.19000000 E Mayotte:Dembeni 2025/10/18 Mangrove sediment 8591229 SAMN30553757 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR21290760 22026 SRR22025431 AMPLICON PRJNA893704 Saltmarsh 38.77087N 76.38072W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 57924833 SAMN31431834 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025431 24102 SRR23715688 AMPLICON PRJNA925291 Seagrass 33.066002 S 151.546549 E Australia: Myuna Bay 2020-09-09 Zostera muelleri Estuarine sediment 182205649 SAMN33555432 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23715688 24111 SRR23715697 AMPLICON PRJNA925291 Seagrass 33.089403 S 151.549078 E Australia: Balcolyn 2020-09-08 Zostera muelleri Estuarine sediment 85800653 SAMN33555414 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23715697 24268 SRR23829723 AMPLICON PRJNA944167 Seagrass 5.33832 S 123.53486 E Indonesia: Wakatobi 2011-08 Syringodium isoetifolium plant 44676828 SAMN33739375 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23829723 24323 SRR23829778 AMPLICON PRJNA944167 Seagrass 1.74401 N 128.03611 E Indonesia: Halmahera 2010-06 Syringodium isoetifolium plant 57510264 SAMN33739291 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23829778 18250 SRR25047363 AMPLICON PRJNA988256 Mangrove 1.3752 N 104.0062 E Singapore: Changi Beach 2021/07/26 sediment sediment 60192776 SAMN36011516 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047363 18251 SRR25047364 AMPLICON PRJNA988256 Mangrove 1.3166 N 103.9834 E Singapore: Tanah Merah 2021/07/13 sediment sediment 65948498 SAMN36011731 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047364 18291 SRR25047404 AMPLICON PRJNA988256 Mangrove 1.2153 N 103.7582 E Singapore: Semakau 2021/08/24 sediment sediment 56897428 SAMN36011694 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047404 18346 SRR25047459 AMPLICON PRJNA988256 Mangrove 1.4096 N 103.9922 E Singapore: Pulau Ubin Chek Jawa 2021/07/14 plastic plastic 96571034 SAMN36011612 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047459 18357 SRR25047470 AMPLICON PRJNA988256 Mangrove 1.3802 N 103.9486 E Singapore: Pasir Ris Park 2021/08/13 sediment sediment 74636562 SAMN36011602 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047470 18088 SRR25728318 AMPLICON PRJNA1007244 Mangrove 20.245306S 106.573139 E Viet Nam: Nam Dinh 2025/08/19 Kandelia obovata estuarine mud 37228884 SAMN37055118 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR25728318 21622 SRR26165207 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 9220485 SAMN37494725 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165207 22270 SRR27176458 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal shrub marsh soil 33995234 SAMN38763974 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176458 22274 SRR27176463 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal shrub marsh soil 31838954 SAMN38763970 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176463 18547 SRR27644640 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 14181618 SAMN39505259 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644640 18612 SRR27644705 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 14757230 SAMN39505333 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644705 18626 SRR27644719 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 9038860 SAMN39505407 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644719 18663 SRR27644756 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/22 Mangrove soil 10755126 SAMN39505316 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644756 18675 SRR27644768 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 13507856 SAMN39505305 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644768 18678 SRR27644771 AMPLICON PRJNA1066794 Mangrove 21.44 S 144.35 E Australia:Exmouth Gulf 2022/08/24 Mangrove soil 21089868 SAMN39505302 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR27644771 22290 SRR28820940 AMPLICON PRJNA1105352 Saltmarsh 30.14N 89.37W USA:Louisiana 2021-01-19 salt marsh soil 147942704 SAMN41100933 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR28820940 15832 SRR5814361 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 56620963 SAMN07338407 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814361 15833 SRR5814362 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 70663312 SAMN07338408 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814362 15861 SRR5814404 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 73278810 SAMN07338394 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814404 15862 SRR5814406 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 82400928 SAMN07338392 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814406 22960 SRR7550339 AMPLICON PRJNA482222 Seagrass 22.22 N 39.6 E Saudi Arabia 2016-04 seagrass Sediment 122913221 SAMN09700826 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR7550339 15125 SRR9213685 AMPLICON PRJNA543557 Mangrove 9.59 N 76.11 E India:Mangalavanam Mangroves 2017/10/01 Puthuvype and Mangalavanam Sediment samples are collected from Mangalavanam mangrove region 184626200 SAMN11772330 PAIRED Illumina HiSeq 4000 METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9213685