# Export date: 2026-06-15 12:06:47 # Microbe: Nitrotoga Nitrotoga sp003402285 (ID: 8827) # Total amplicons: 66 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 21612 ERR12080746 AMPLICON PRJEB66381 Saltmarsh 53.75981508N 7.71560755E 2019-07-15 salt marsh sediment 24259792 SAMEA114446183 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080746 21640 ERR12080747 AMPLICON PRJEB66381 Saltmarsh 53.75842165N 7.72091556E 2019-07-15 salt marsh sediment 36238259 SAMEA114446184 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080747 21641 ERR12080748 AMPLICON PRJEB66381 Saltmarsh 53.75874119N 7.71911983E 2019-07-15 salt marsh sediment 28738449 SAMEA114446185 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080748 21642 ERR12080749 AMPLICON PRJEB66381 Saltmarsh 53.75920507N 7.71902046E 2019-07-15 salt marsh sediment 39430492 SAMEA114446186 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080749 21648 ERR12080755 AMPLICON PRJEB66381 Saltmarsh 53.75968597N 7.71762858E 2019-07-15 salt marsh sediment 23685296 SAMEA114446192 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080755 21613 ERR12080756 AMPLICON PRJEB66381 Saltmarsh 53.75954603N 7.71673026E 2019-07-15 salt marsh sediment 40309567 SAMEA114446193 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080756 21614 ERR12080757 AMPLICON PRJEB66381 Saltmarsh 53.75979908N 7.7155871E 2019-07-15 salt marsh sediment 36331976 SAMEA114446194 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080757 21615 ERR12080758 AMPLICON PRJEB66381 Saltmarsh 53.75840802N 7.7208867E 2019-07-15 salt marsh sediment 42918048 SAMEA114446195 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080758 21650 ERR12080760 AMPLICON PRJEB66381 Saltmarsh 53.75919508N 7.71899634E 2019-07-15 salt marsh sediment 44792071 SAMEA114446198 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080760 21657 ERR12080768 AMPLICON PRJEB66381 Saltmarsh 53.76264435N 7.72270043E 2019-07-15 salt marsh sediment 30331668 SAMEA114446206 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR12080768 22553 ERR3890628 AMPLICON PRJEB36104 Seagrass 38.642901 N 143.059055 E 2016-07-08 Zostera muelleri leaf 71917800 SAMEA6528939 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR3890628 14921 SRR12400118 AMPLICON PRJNA650560 Mangrove 13.74293 S 39.05851 W Brazil: Juliana River basin 2025/02/20 Mangrove mangrove sediment 92957645 SAMN15718367 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12400118 14923 SRR12400120 AMPLICON PRJNA650560 Mangrove 13.74293 S 39.05851 W Brazil: Juliana River basin 2025/02/20 Mangrove mangrove sediment 94604080 SAMN15718365 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12400120 14926 SRR12400123 AMPLICON PRJNA650560 Mangrove 13.83692 S 39.33435 W Brazil: Juliana River basin 2025/02/20 Mangrove mangrove sediment 91406705 SAMN15718362 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12400123 14928 SRR12400125 AMPLICON PRJNA650560 Mangrove 13.83692 S 39.33435 W Brazil: Juliana River basin 2025/02/20 Mangrove mangrove sediment 97654572 SAMN15718360 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12400125 20919 SRR12852742 AMPLICON PRJNA670253 Saltmarsh 30.05833N 89.79194W USA: New Orleans\, LA 2018-06-15 sediment 58102781 SAMN16490723 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852742 20971 SRR12852839 AMPLICON PRJNA670253 Saltmarsh 30.09861N 84.14806W USA: St. Marks\, FL 2018-06-19 sediment 10672829 SAMN16490782 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852839 20998 SRR12852880 AMPLICON PRJNA670253 Saltmarsh 30.37222N 88.40556W USA: Moss Point\, MS 2018-06-18 sediment 3886750 SAMN16490744 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852880 20664 SRR13380015 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-04 Salt marsh sediment 7314037 SAMN17251902 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380015 20712 SRR13380067 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-04 Salt marsh sediment 8951144 SAMN17251808 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380067 21331 SRR1756951 AMPLICON PRJNA272558 Saltmarsh 24.61N 118.06E China not collected Spartina alterniflora Rhizoplane 11335200 SAMN03283791 PAIRED Illumina HiSeq 2000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR1756951 21334 SRR1756954 AMPLICON PRJNA272558 Saltmarsh 24.61N 118.06E China not collected Spartina alterniflora Rhizoplane 23929350 SAMN03283794 PAIRED Illumina HiSeq 2000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR1756954 22027 SRR22025432 AMPLICON PRJNA893704 Saltmarsh 38.7652N 76.38328W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 64203950 SAMN31431833 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025432 22047 SRR22025456 AMPLICON PRJNA893704 Saltmarsh 38.76196N 76.38418W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 93777494 SAMN31431875 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025456 22048 SRR22025457 AMPLICON PRJNA893704 Saltmarsh 38.76712N 76.38478W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 68284997 SAMN31431830 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025457 22157 SRR27176329 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal typha marsh soil 17479760 SAMN38763944 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176329 22165 SRR27176341 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal juncus marsh soil 49969826 SAMN38763918 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176341 22197 SRR27176375 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal shrub marsh soil 43874862 SAMN38763998 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176375 22198 SRR27176376 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal shrub marsh soil 27090608 SAMN38763997 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176376 22204 SRR27176383 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal shrub marsh soil 40759430 SAMN38763991 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176383 22227 SRR27176406 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal shrub marsh soil 46150130 SAMN38764013 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176406 22249 SRR27176433 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 bottomland hardwood forest soil 56133646 SAMN38763960 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176433 22250 SRR27176434 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 bottomland hardwood forest soil 39787594 SAMN38763959 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176434 22251 SRR27176435 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 bottomland hardwood forest soil 18199426 SAMN38763958 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176435 22255 SRR27176439 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 bottomland hardwood forest soil 76483312 SAMN38763954 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176439 22256 SRR27176440 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 bottomland hardwood forest soil 79093498 SAMN38763953 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176440 22280 SRR27176470 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 bottomland hardwood forest soil 40578532 SAMN38763963 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176470 22292 SRR28820943 AMPLICON PRJNA1105352 Saltmarsh 30.14N 89.37W USA:Louisiana 2021-01-05 salt marsh soil 133644602 SAMN41100902 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR28820943 22320 SRR28821001 AMPLICON PRJNA1105352 Saltmarsh 30.14N 89.37W USA:Louisiana 2020-12-28 salt marsh soil 58736538 SAMN41100878 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR28821001 22387 SRR28821128 AMPLICON PRJNA1105352 Saltmarsh 30.14N 89.37W USA:Louisiana 2021-01-05 salt marsh soil 113315664 SAMN41100908 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR28821128 21661 SRR5360886 AMPLICON PRJNA379357 Saltmarsh 53.76267N 7.72239E Germany: Spiekeroog 2015 Salt marsh sediment 148825846 SAMN06606352 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360886 21667 SRR5360893 AMPLICON PRJNA379357 Saltmarsh 53.7626N 7.72312E Germany: Spiekeroog 2015 Salt marsh sediment 132962904 SAMN06606345 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360893 21670 SRR5360896 AMPLICON PRJNA379357 Saltmarsh 53.76256N 7.72346E Germany: Spiekeroog 2015 Salt marsh sediment 105858161 SAMN06606342 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360896 21673 SRR5360899 AMPLICON PRJNA379357 Saltmarsh 53.76256N 7.72358E Germany: Spiekeroog 2015 Salt marsh sediment 140821227 SAMN06606339 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360899 21675 SRR5360901 AMPLICON PRJNA379357 Saltmarsh 53.76191N 7.72333E Germany: Spiekeroog 2015 Salt marsh sediment 115480604 SAMN06606337 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360901 21691 SRR5360920 AMPLICON PRJNA379357 Saltmarsh 53.76267N 7.72239E Germany: Spiekeroog 2015 Salt marsh sediment 131437922 SAMN06606318 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360920 21700 SRR5360930 AMPLICON PRJNA379357 Saltmarsh 53.76209N 7.72294E Germany: Spiekeroog 2015 Salt marsh sediment 145775568 SAMN06606308 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360930 22001 SRR5486624 AMPLICON PRJNA384656 Saltmarsh 41.6249N 71.3228W USA:Rhode Island\,Prudence Island 2010-10-25 salt marsh tidal mudflat 83833498 SAMN06843672 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486624 22886 SRR5675651 AMPLICON PRJNA389390 Seagrass 54.330063 N 10.149543 E Germany:Baltic Sea 2016-02 Zostera marina seawater 66503722 SAMN07197244 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR5675651 21903 SRR6371075 AMPLICON PRJNA422172 Saltmarsh 37.77N 119.08E China 2017-10-04 Salt marsh soils 32018574 SAMN08166697 PAIRED Illumina MiniSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR6371075 22907 SRR6424048 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914456 E Taiwan 2013-08-01 seagrass root 60885076 SAMN08222569 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424048 22908 SRR6424049 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914458 E Taiwan 2013-08-01 seagrass rhizosphere 59309040 SAMN08222571 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424049 21126 SRR8931885 AMPLICON PRJNA533633 Saltmarsh 45.37N 123.96W USA: Marsh along Netarts Bay\, Oregon 2018-07-05 estuarine sediments 30892578 SAMN11463481 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8931885 21277 SRR9089761 AMPLICON PRJNA543559 Saltmarsh 30.97N 121.95E China:Shanghai 2017-06 salt marsh soil 41755322 SAMN11774855 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089761 21278 SRR9089762 AMPLICON PRJNA543559 Saltmarsh 30.97N 121.95E China:Shanghai 2017-03 salt marsh soil 35118272 SAMN11774854 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089762 21279 SRR9089763 AMPLICON PRJNA543559 Saltmarsh 30.97N 121.95E China:Shanghai 2017-09 salt marsh soil 34647508 SAMN11774856 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089763 21281 SRR9089765 AMPLICON PRJNA543559 Saltmarsh 30.89N 121.97E China:Shanghai 2017-06 salt marsh soil 32477298 SAMN11774859 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089765 21282 SRR9089766 AMPLICON PRJNA543559 Saltmarsh 30.87N 121.94E China:Shanghai 2017-06 salt marsh soil 36785210 SAMN11774863 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089766 21283 SRR9089767 AMPLICON PRJNA543559 Saltmarsh 30.89N 121.97E China:Shanghai 2018-12 salt marsh soil 25967872 SAMN11774872 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089767 21284 SRR9089768 AMPLICON PRJNA543559 Saltmarsh 30.89N 121.97E China:Shanghai 2017-09 salt marsh soil 32382182 SAMN11774860 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089768 21285 SRR9089771 AMPLICON PRJNA543559 Saltmarsh 30.87N 121.94E China:Shanghai 2017-03 salt marsh soil 38112620 SAMN11774862 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089771 21288 SRR9089774 AMPLICON PRJNA543559 Saltmarsh 30.88N 121.97E China:Shanghai 2017-06 salt marsh soil 26893146 SAMN11774867 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089774 21289 SRR9089775 AMPLICON PRJNA543559 Saltmarsh 30.88N 121.97E China:Shanghai 2017-03 salt marsh soil 33409194 SAMN11774866 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089775 21290 SRR9089776 AMPLICON PRJNA543559 Saltmarsh 30.88N 121.97E China:Shanghai 2017-12 salt marsh soil 43376508 SAMN11774869 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089776 21292 SRR9089778 AMPLICON PRJNA543559 Saltmarsh 30.89N 121.97E China:Shanghai 2018-07 salt marsh soil 43555302 SAMN11774871 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089778 21293 SRR9089779 AMPLICON PRJNA543559 Saltmarsh 30.89N 121.97E China:Shanghai 2018-03 salt marsh soil 43419852 SAMN11774870 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089779