# Export date: 2026-06-14 22:04:43 # Microbe: Nitrosomonas Nitrosomonas sp009833095 (ID: 8885) # Total amplicons: 68 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 19807 SRR10092939 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/20 Gracilaria vermiculophylla/Agarophyton vermiculophyllum saline water 27627037 SAMN12716482 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092939 21611 SRR11772251 AMPLICON PRJNA631747 Saltmarsh 42.78594979N 70.83731232W USA 2016 Sporobolus alterniflorus sediment 5081028422 SAMN14891083 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11772251 20615 SRR12228797 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus maritimus rhizosphere 78202500 SAMN10953564 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228797 20616 SRR12228798 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus maritimus rhizosphere 133311500 SAMN10953563 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228798 20618 SRR12228803 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus alterniflorus rhizosphere 36028000 SAMN10953560 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228803 20619 SRR12228814 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus alterniflorus rhizosphere 61578500 SAMN10953559 PAIRED Illumina MiSeq METAGENOMIC ITS https://www.ncbi.nlm.nih.gov/sra/SRR12228814 20622 SRR12228831 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus bulk soil 81997000 SAMN10953579 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228831 20624 SRR12228834 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 554476500 SAMN10953576 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228834 20625 SRR12228835 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 123993000 SAMN10953575 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228835 20627 SRR12228837 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 106605500 SAMN10953574 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228837 20629 SRR12228839 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 59373500 SAMN10953572 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228839 20630 SRR12228840 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 96120000 SAMN10953571 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228840 20633 SRR12228845 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus maritimus rhizosphere 32079000 SAMN10953566 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228845 20651 SRR13380001 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-07 Salt marsh sediment 32276625 SAMN17251875 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380001 15131 SRR14740818 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba mangrove sediment 67216800 SAMN19581187 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740818 15132 SRR14740819 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba mangrove sediment 54579600 SAMN19581186 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740819 15133 SRR14740820 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba mangrove sediment 64954200 SAMN19581185 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740820 15134 SRR14740821 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba mangrove sediment 47581800 SAMN19581184 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740821 15135 SRR14740822 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba mangrove sediment 54825000 SAMN19580896 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740822 15143 SRR14740830 AMPLICON PRJNA735404 Mangrove 2017/03/07 Sonneratia alba and Avicennia alba 9410400 SAMN19581176 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740830 15146 SRR14740833 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Sediment 61647600 SAMN19580895 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740833 15169 SRR14740856 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Fruit 39741600 SAMN19580893 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740856 15278 SRR14740965 AMPLICON PRJNA735404 Mangrove 1.211727 N 103.758781 E Malaysia: Semakau 2017/03/07 Sonneratia alba and Avicennia alba Fruit 90713400 SAMN19581055 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740965 15287 SRR14740974 AMPLICON PRJNA735404 Mangrove 2017/03/07 Sonneratia alba and Avicennia alba 6453600 SAMN19581047 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740974 15288 SRR14740975 AMPLICON PRJNA735404 Mangrove 1.211727 N 103.758781 E Malaysia: Semakau 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 51374400 SAMN19581046 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740975 15289 SRR14740976 AMPLICON PRJNA735404 Mangrove 1.211727 N 103.758781 E Malaysia: Semakau 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 48544800 SAMN19581045 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740976 15294 SRR14740981 AMPLICON PRJNA735404 Mangrove 1.211727 N 103.758781 E Malaysia: Semakau 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 47023800 SAMN19581041 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740981 15311 SRR14740998 AMPLICON PRJNA735404 Mangrove 1.410703 N 103.991095 E Malaysia: Chek Jawa 2017/03/07 Sonneratia alba and Avicennia alba Sediment 54356400 SAMN19581025 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740998 15314 SRR14741001 AMPLICON PRJNA735404 Mangrove 1.410703 N 103.991095 E Malaysia: Chek Jawa 2017/03/07 Sonneratia alba and Avicennia alba Sediment 53853000 SAMN19581023 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741001 15316 SRR14741003 AMPLICON PRJNA735404 Mangrove 1.410703 N 103.991095 E Malaysia: Chek Jawa 2017/03/07 Sonneratia alba and Avicennia alba Sediment 62781000 SAMN19581021 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741003 15319 SRR14741006 AMPLICON PRJNA735404 Mangrove 1.410703 N 103.991095 E Malaysia: Chek Jawa 2017/03/07 Sonneratia alba and Avicennia alba Sediment 62658000 SAMN19581018 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741006 15322 SRR14741009 AMPLICON PRJNA735404 Mangrove 2017/03/07 Sonneratia alba and Avicennia alba 1076400 SAMN19581015 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741009 15357 SRR14741044 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 38623200 SAMN19580876 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741044 15365 SRR14741052 AMPLICON PRJNA735404 Mangrove 1.445826 N 103.707778 E Malaysia: Lim Chu Kang 2017/03/07 Sonneratia alba and Avicennia alba Sediment 43966200 SAMN19580976 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741052 15375 SRR14741062 AMPLICON PRJNA735404 Mangrove 1.445826 N 103.707778 E Malaysia: Lim Chu Kang 2017/03/07 Sonneratia alba and Avicennia alba Fruit 29968800 SAMN19580967 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741062 15379 SRR14741066 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 43029000 SAMN19580874 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741066 15380 SRR14741067 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Leaf 49279800 SAMN19580865 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741067 15496 SRR14741186 AMPLICON PRJNA735404 Mangrove 1.445826 N 103.767778 E Malaysia: Lim Chu Kang 2017/03/07 Sonneratia alba and Avicennia alba Sediment 74715600 SAMN19581315 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741186 15502 SRR14741192 AMPLICON PRJNA735404 Mangrove 1.445826 N 103.767778 E Malaysia: Lim Chu Kang 2017/03/07 Sonneratia alba and Avicennia alba Sediment 83167800 SAMN19581310 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741192 15504 SRR14741194 AMPLICON PRJNA735404 Mangrove 1.445826 N 103.767778 E Malaysia: Lim Chu Kang 2017/03/07 Sonneratia alba and Avicennia alba Sediment 57518400 SAMN19581308 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741194 15508 SRR14741198 AMPLICON PRJNA735404 Mangrove 2017/03/07 Sonneratia alba and Avicennia alba 14055000 SAMN19581304 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741198 15562 SRR14741252 AMPLICON PRJNA735404 Mangrove 6.456892 N 99.822607 E Malaysia: Langkawi 2017/03/07 Sonneratia alba and Avicennia alba Fruit 35713800 SAMN19581256 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741252 15565 SRR14741255 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Sediment 60457800 SAMN19580903 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741255 15587 SRR14741277 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Sediment 69610200 SAMN19580901 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741277 15598 SRR14741288 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Sediment 66333000 SAMN19580900 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741288 15603 SRR14741293 AMPLICON PRJNA735404 Mangrove 2.408307 N 101.858851 E Malaysia: Port Dickson 2017/03/07 Sonneratia alba and Avicennia alba Fruit 44877600 SAMN19581219 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741293 15644 SRR14741334 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Leaf 29077200 SAMN19580873 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741334 15731 SRR14741421 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Leaf 28929600 SAMN19580870 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741421 14954 SRR15606924 AMPLICON PRJNA757625 Mangrove 22.5286 N 114.0028 E China 2025/05/20 Mangrove mangrove sidiments 42376586 SAMN20969812 PAIRED Illumina MiSeq OTHER 16S https://www.ncbi.nlm.nih.gov/sra/SRR15606924 18891 SRR18349716 AMPLICON PRJNA817083 Mangrove 25.42 N 67.1 E Pakistan: Lasbela 2019/11/16 Mangrove mangrove sediments 125618463 SAMN26747206 PAIRED Illumina HiSeq 2500 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR18349716 18896 SRR18349721 AMPLICON PRJNA817083 Mangrove 25.42 N 67.1 E Pakistan: Lasbela 2019/11/16 Mangrove mangrove sediments 100440737 SAMN26747218 PAIRED Illumina HiSeq 2500 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR18349721 18897 SRR18349722 AMPLICON PRJNA817083 Mangrove Pakistan: Lasbela Mangrove mangrove sediments 122428974 SAMN26747217 PAIRED Illumina HiSeq 2500 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR18349722 18898 SRR18349723 AMPLICON PRJNA817083 Mangrove 25.42 N 67.1 E Pakistan: Lasbela 2019/01/12 Mangrove mangrove sediments 109849775 SAMN26747216 PAIRED Illumina HiSeq 2500 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR18349723 18783 SRR19630965 AMPLICON PRJNA847709 Mangrove 19.74416667N 109.2744444 E China 2025/07/20 Mangrove estuarine mud 43097180 SAMN28982414 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR19630965 18793 SRR19630978 AMPLICON PRJNA847709 Mangrove 21.56305556N 109.7672222 E China 2025/06/20 Mangrove estuarine mud 43309084 SAMN28982402 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR19630978 19095 SRR19630985 AMPLICON PRJNA847709 Mangrove 22.52611111N 114.0036111 E China 2025/08/20 Mangrove estuarine mud 41684888 SAMN28982396 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR19630985 18801 SRR19630992 AMPLICON PRJNA847709 Mangrove 23.91944444N 117.4188889 E China 2025/07/20 Mangrove estuarine mud 31213098 SAMN28982381 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR19630992 19097 SRR19630993 AMPLICON PRJNA847709 Mangrove 23.91944444N 117.4191667 E China 2025/07/20 Mangrove estuarine mud 42781732 SAMN28982380 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR19630993 24220 SRR23829675 AMPLICON PRJNA944167 Seagrass 8.49736 S 119.75892 E Indonesia: Komodo 2011-08 Syringodium isoetifolium plant 29769502 SAMN33739327 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23829675 18187 SRR25047300 AMPLICON PRJNA988256 Mangrove 1.3752 N 104.0062 E Singapore: Changi Beach 2021/07/26 plastic plastic 64806504 SAMN36011509 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047300 16856 SRR26222187 AMPLICON PRJNA1021532 Mangrove 15.2958 N 73.4911 E India 2020/08/05 Mangrove mangrove sediment 1049480500 SAMN37558048 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR26222187 15832 SRR5814361 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 56620963 SAMN07338407 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814361 17568 SRR5814365 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 81066141 SAMN07338381 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR5814365 15840 SRR5814373 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 75489011 SAMN07338414 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814373 15842 SRR5814376 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 65451356 SAMN07338365 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814376 15858 SRR5814400 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 67587995 SAMN07338372 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814400 15859 SRR5814402 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 65923215 SAMN07338396 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814402 15864 SRR5814408 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 92545277 SAMN07338390 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814408