# Export date: 2026-06-15 09:28:52 # Microbe: Thiobacillus Thiobacillus thioparus (ID: 8894) # Total amplicons: 63 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 20820 SRR11232919 AMPLICON PRJNA602775 Saltmarsh 41.7129N 69.9956W USA: Harwich\, MA Muddy Creek Marsh 2016-07-26 sediment 6226101 SAMN13950607 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11232919 21157 SRR11233073 AMPLICON PRJNA602775 Saltmarsh 41.7123N 69.9956W USA: Harwich\, MA Muddy Creek Marsh 2015-06-07 sediment 20551442 SAMN13950656 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233073 16700 SRR11930137 AMPLICON PRJNA603641 Mangrove 21.9497 N 89.1833 E India: Sundarban 2018/12/05 rice rhizospheric soil rice soil 1010770215 SAMN15143747 PAIRED Illumina HiSeq 2500 METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11930137 16702 SRR11930139 AMPLICON PRJNA603641 Mangrove 21.9497 N 89.1833 E India: Sundarban 2018/12/05 rice rhizospheric soil rice soil 985302685 SAMN15143745 PAIRED Illumina HiSeq 2500 METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11930139 16703 SRR11930140 AMPLICON PRJNA603641 Mangrove 21.9497 N 89.1833 E India: Sundarban 2018/12/05 Mangrove mangrove sediments 832697366 SAMN15143744 PAIRED Illumina HiSeq 2500 METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11930140 16692 SRR12070300 AMPLICON PRJNA640402 Mangrove China:Shenzhen 2019/01/12 Mangrove soil sample 97780041 SAMN15317502 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12070300 16694 SRR12070302 AMPLICON PRJNA640402 Mangrove China:Shenzhen 2019/01/12 Mangrove soil sample 86646821 SAMN15317500 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12070302 16742 SRR12070305 AMPLICON PRJNA640402 Mangrove China:Shenzhen 2018/07/17 Mangrove soil sample 92581808 SAMN15317497 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12070305 14964 SRR12164894 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 93918767 SAMN15447455 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164894 14966 SRR12164896 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 95600921 SAMN15447453 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164896 14969 SRR12164899 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 94159904 SAMN15447450 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164899 14971 SRR12164901 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 87558429 SAMN15447448 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164901 20624 SRR12228834 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 554476500 SAMN10953576 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228834 20625 SRR12228835 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 123993000 SAMN10953575 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228835 20626 SRR12228836 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus alterniflorus rhizosphere 206085000 SAMN10953557 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228836 14923 SRR12400120 AMPLICON PRJNA650560 Mangrove 13.74293 S 39.05851 W Brazil: Juliana River basin 2025/02/20 Mangrove mangrove sediment 94604080 SAMN15718365 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR12400120 21206 SRR12852713 AMPLICON PRJNA670253 Saltmarsh 30.3778N 87.83778W USA: Weeks Bay\, AL 2018-06-18 sediment 90669267 SAMN16490919 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852713 21211 SRR12852722 AMPLICON PRJNA670253 Saltmarsh 30.37222N 88.40556W USA: Moss Point\, MS 2018-06-18 sediment 51763921 SAMN16490911 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852722 20913 SRR12852730 AMPLICON PRJNA670253 Saltmarsh 30.05833N 89.79194W USA: New Orleans\, LA 2018-06-15 sediment 45901623 SAMN16490724 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852730 20983 SRR12852859 AMPLICON PRJNA670253 Saltmarsh 29.33139N 90.69028W USA: Cocodrie\, LA 2018-06-14 sediment 3288915 SAMN16490710 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852859 20987 SRR12852865 AMPLICON PRJNA670253 Saltmarsh 30.3778N 87.83778W USA: Weeks Bay\, AL 2018-06-18 sediment 4827505 SAMN16490758 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852865 20998 SRR12852880 AMPLICON PRJNA670253 Saltmarsh 30.37222N 88.40556W USA: Moss Point\, MS 2018-06-18 sediment 3886750 SAMN16490744 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852880 16735 SRR13291667 AMPLICON PRJNA685020 Mangrove 21.510783 N 110.010353 E China: Maoming 2019/04/25 Mangrove mangrove root-associated soil 39945152 SAMN17075136 PAIRED Illumina HiSeq 2500 GENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR13291667 15008 SRR13291669 AMPLICON PRJNA685020 Mangrove 21.510783 N 110.010353 E China: Maoming 2019/04/25 Mangrove mangrove root-associated soil 28112266 SAMN17075134 PAIRED Illumina HiSeq 2500 GENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR13291669 20678 SRR13380029 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 64472104 SAMN17251818 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380029 20679 SRR13380030 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 38645248 SAMN17251817 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380030 20680 SRR13380031 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 35321681 SAMN17251816 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380031 20723 SRR13380079 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 41902338 SAMN17251914 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380079 20771 SRR13380137 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-06 Salt marsh sediment 48154905 SAMN17251822 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380137 15115 SRR14729228 AMPLICON PRJNA735070 Mangrove 4.858881 N 52.399868 W French Guiana:Cayenne estuary 2025/11/17 Mangrove mangrove sediment 15063500 SAMN19555131 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR14729228 15116 SRR14729230 AMPLICON PRJNA735070 Mangrove 4.858881 N 52.399868 W French Guiana:Cayenne estuary 2025/11/17 Mangrove mangrove sediment 9605607 SAMN19555129 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR14729230 15118 SRR14729234 AMPLICON PRJNA735070 Mangrove 4.858881 N 52.399868 W French Guiana:Cayenne estuary 2025/11/17 Mangrove mangrove sediment 18255180 SAMN19555126 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR14729234 15124 SRR14729242 AMPLICON PRJNA735070 Mangrove 4.914780 N 52.337759 W French Guiana:Cayenne estuary 2025/11/17 Mangrove mangrove sediment 32957008 SAMN19555110 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR14729242 15415 SRR14741103 AMPLICON PRJNA735404 Mangrove 2.781230 N 104.206822 E Malaysia: Tioman 2017/03/07 Sonneratia alba and Avicennia alba Sediment 62436600 SAMN19581390 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741103 15540 SRR14741230 AMPLICON PRJNA735404 Mangrove 6.456892 N 99.822607 E Malaysia: Langkawi 2017/03/07 Sonneratia alba and Avicennia alba Sediment 61162800 SAMN19581275 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741230 15565 SRR14741255 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Sediment 60457800 SAMN19580903 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741255 22029 SRR22025434 AMPLICON PRJNA893704 Saltmarsh 38.72246N 76.33719W USA: Chesapeake Bay 2019-06-28 Spartina alterniflora peat soil 78802686 SAMN31431895 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025434 22032 SRR22025438 AMPLICON PRJNA893704 Saltmarsh 38.72246N 76.33719W USA: Chesapeake Bay 2019-06-28 Spartina alterniflora peat soil 68085240 SAMN31431892 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025438 22033 SRR22025439 AMPLICON PRJNA893704 Saltmarsh 38.72246N 76.33719W USA: Chesapeake Bay 2019-06-28 Spartina alterniflora peat soil 69019516 SAMN31431891 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025439 22036 SRR22025442 AMPLICON PRJNA893704 Saltmarsh 38.72246N 76.33719W USA: Chesapeake Bay 2019-06-28 Spartina alterniflora peat soil 88512415 SAMN31431888 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025442 22037 SRR22025444 AMPLICON PRJNA893704 Saltmarsh 38.72246N 76.33719W USA: Chesapeake Bay 2019-06-28 Spartina alterniflora peat soil 97705169 SAMN31431886 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025444 22055 SRR22025464 AMPLICON PRJNA893704 Saltmarsh 38.75533N 76.38017W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 84398424 SAMN31431868 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025464 22077 SRR22025488 AMPLICON PRJNA893704 Saltmarsh 38.77305N 76.37801W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 64366788 SAMN31431846 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025488 16856 SRR26222187 AMPLICON PRJNA1021532 Mangrove 15.2958 N 73.4911 E India 2020/08/05 Mangrove mangrove sediment 1049480500 SAMN37558048 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR26222187 22172 SRR27176348 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal juncus marsh soil 38220818 SAMN38763911 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176348 22175 SRR27176351 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal juncus marsh soil 46677120 SAMN38763909 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176351 22182 SRR27176359 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 bottomland hardwood forest soil 44387356 SAMN38763887 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176359 22187 SRR27176364 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal typha marsh soil 37054796 SAMN38763882 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176364 22191 SRR27176368 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal shrub marsh soil 25642820 SAMN38764004 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176368 22195 SRR27176373 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal shrub marsh soil 25062678 SAMN38764000 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176373 22199 SRR27176378 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal shrub marsh soil 9961772 SAMN38763995 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176378 22206 SRR27176385 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal typha marsh soil 44583656 SAMN38763937 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176385 22209 SRR27176388 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal typha marsh soil 35159444 SAMN38763934 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176388 22217 SRR27176396 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal juncus marsh soil 64946006 SAMN38763927 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176396 22219 SRR27176398 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal juncus marsh soil 40739498 SAMN38763924 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176398 22235 SRR27176415 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal shrub marsh soil 30804906 SAMN38764005 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176415 22238 SRR27176418 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal shrub marsh soil 30181276 SAMN38763988 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176418 22264 SRR27176449 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal typha marsh soil 64196744 SAMN38763865 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176449 16608 SRR9593072 AMPLICON PRJNA550512 Mangrove 6.8700833 N 100.969027 E Thailand 2018/07/31 Mud estuarine mud 33880016 SAMN12124985 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593072 16615 SRR9593079 AMPLICON PRJNA550512 Mangrove 6.8948333 N 100.991777 E Thailand 2018/04/01 Mud estuarine mud 49673722 SAMN12124969 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593079 16620 SRR9593084 AMPLICON PRJNA550512 Mangrove 6.8948333 N 100.991777 E Thailand 2017/12/04 Mud estuarine mud 105212123 SAMN12124968 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593084 16621 SRR9593085 AMPLICON PRJNA550512 Mangrove 6.8948333 N 100.991777 E Thailand 2018/04/01 Mud estuarine mud 64678702 SAMN12124969 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593085 16622 SRR9593086 AMPLICON PRJNA550512 Mangrove 6.8948333 N 100.991777 E Thailand 2017/12/04 Mud estuarine mud 88331429 SAMN12124968 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593086