# Export date: 2026-06-15 11:42:12 # Microbe: Thiohalocapsa_602636 Thiohalocapsa sp001469165 (ID: 8904) # Total amplicons: 58 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 20823 SRR11232925 AMPLICON PRJNA602775 Saltmarsh 41.7399N 69.9694W USA: Orleans\, MA marsh off of Crows Landing 2017-10-30 sediment 16251902 SAMN13950494 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11232925 20824 SRR11232927 AMPLICON PRJNA602775 Saltmarsh 41.7123N 69.9956W USA: Harwich\, MA Muddy Creek Marsh 2017-06 sediment 18339272 SAMN13950599 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11232927 21147 SRR11233056 AMPLICON PRJNA602775 Saltmarsh 41.7396N 69.9691W USA: Orleans\, MA marsh off of Crows Landing 2017-10-30 sediment 17780512 SAMN13950501 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233056 21156 SRR11233072 AMPLICON PRJNA602775 Saltmarsh 41.7124N 69.9959W USA: Harwich\, MA Muddy Creek Marsh 2016-06-30 sediment 22441148 SAMN13950660 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233072 21158 SRR11233074 AMPLICON PRJNA602775 Saltmarsh 41.7123N 69.9957W USA: Harwich\, MA Muddy Creek Marsh 2015-06-07 sediment 20721481 SAMN13950655 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233074 21160 SRR11233076 AMPLICON PRJNA602775 Saltmarsh 41.123N 69.996W USA: Harwich\, MA Muddy Creek Marsh 2015-06-07 sediment 20932634 SAMN13950653 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233076 21162 SRR11233085 AMPLICON PRJNA602775 Saltmarsh 41.7129N 69.9956W USA: Harwich\, MA Muddy Creek Marsh 2015-08-19 sediment 27178479 SAMN13950645 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233085 21163 SRR11233086 AMPLICON PRJNA602775 Saltmarsh 41.7123N 69.9956W USA: Harwich\, MA Muddy Creek Marsh 2015-08-19 sediment 24576052 SAMN13950644 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233086 21385 SRR11233088 AMPLICON PRJNA602775 Saltmarsh 41.7124N 69.9959W USA: Harwich\, MA Muddy Creek Marsh 2015-08-19 sediment 17316902 SAMN13950642 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233088 20852 SRR11233101 AMPLICON PRJNA602775 Saltmarsh 41.7123N 69.9957W USA: Harwich\, MA Muddy Creek Marsh 2015-11-04 sediment 13502414 SAMN13950544 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233101 21389 SRR11233112 AMPLICON PRJNA602775 Saltmarsh 41.7124N 69.9959W USA: Harwich\, MA Muddy Creek Marsh 2017-07 sediment 17533360 SAMN13950533 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233112 21390 SRR11233114 AMPLICON PRJNA602775 Saltmarsh 41.7399N 69.9688W USA: Orleans\, MA marsh off of Crows Landing 2017-10-30 sediment 16034193 SAMN13950487 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233114 20857 SRR11233117 AMPLICON PRJNA602775 Saltmarsh 41.123N 69.996W USA: Harwich\, MA Muddy Creek Marsh 2015-11-04 sediment 18069639 SAMN13950530 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233117 21172 SRR11233123 AMPLICON PRJNA602775 Saltmarsh 41.123N 69.996W USA: Harwich\, MA Muddy Creek Marsh 2017-08 sediment 7458351 SAMN13950527 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233123 20862 SRR11233173 AMPLICON PRJNA602775 Saltmarsh 41.7387N 69.9699W USA: Orleans\, MA marsh off of Davis Road 2016-07-26 sediment 10116325 SAMN13950511 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233173 20866 SRR11233186 AMPLICON PRJNA602775 Saltmarsh 41.7396N 69.9691W USA: Orleans\, MA marsh off of Crows Landing 2015-08-26 sediment 13647064 SAMN13950703 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233186 21397 SRR11233187 AMPLICON PRJNA602775 Saltmarsh 41.7399N 69.9694W USA: Orleans\, MA marsh off of Crows Landing 2015-08-26 sediment 12926978 SAMN13950702 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233187 20873 SRR11233206 AMPLICON PRJNA602775 Saltmarsh 41.7399N 69.9694W USA: Orleans\, MA marsh off of Crows Landing 2017-07 sediment 13094203 SAMN13950491 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233206 20890 SRR11233233 AMPLICON PRJNA602775 Saltmarsh 41.7389N 69.9699W USA: Orleans\, MA marsh off of Davis Road 2017-06 sediment 12694825 SAMN13950503 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233233 21196 SRR11233244 AMPLICON PRJNA602775 Saltmarsh 41.7396N 69.9691W USA: Orleans\, MA marsh off of Crows Landing 2015-10-22 sediment 11174155 SAMN13950502 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233244 20895 SRR11233251 AMPLICON PRJNA602775 Saltmarsh 41.123N 69.996W USA: Harwich\, MA Muddy Creek Marsh 2015-08-19 sediment 18192590 SAMN13950641 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233251 23378 SRR11489879 AMPLICON PRJNA623164 Seagrass 30.0553 N 84.1664 W USA: Florida\, Apalachee Bay 2016-09-21 Thalassia testudinum blade surface 13255544 SAMN14540246 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11489879 23384 SRR11489885 AMPLICON PRJNA623164 Seagrass 30.0553 N 84.1664 W USA: Florida\, Apalachee Bay 2016-08-20 Thalassia testudinum blade surface 10710853 SAMN14540241 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11489885 23389 SRR11489890 AMPLICON PRJNA623164 Seagrass 30.0631 N 84.1665 W USA: Florida\, Apalachee Bay 2016-09-21 Thalassia testudinum blade surface 29813694 SAMN14540236 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11489890 23395 SRR11489896 AMPLICON PRJNA623164 Seagrass 30.0706 N 84.1669 W USA: Florida\, Apalachee Bay 2016-09-21 Thalassia testudinum blade surface 11625161 SAMN14540222 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11489896 23398 SRR11489899 AMPLICON PRJNA623164 Seagrass 30.0631 N 84.1665 W USA: Florida\, Apalachee Bay 2016-07-22 Thalassia testudinum blade surface 10333467 SAMN14540229 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11489899 23406 SRR11489907 AMPLICON PRJNA623164 Seagrass 30.0631 N 84.1665 W USA: Florida\, Apalachee Bay 2016-07-22 Thalassia testudinum blade surface 10383250 SAMN14540228 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11489907 21611 SRR11772251 AMPLICON PRJNA631747 Saltmarsh 42.78594979N 70.83731232W USA 2016 Sporobolus alterniflorus sediment 5081028422 SAMN14891083 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11772251 20606 SRR12125085 AMPLICON PRJNA643437 Saltmarsh 41.5758N 70.6394W USA: Little Sippewissett Salt Marsh\, Falmouth\, MA 2018-09-30 Salt marsh sediment 51414296 SAMN15414967 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12125085 20612 SRR12125091 AMPLICON PRJNA643437 Saltmarsh 41.5758N 70.6394W USA: Little Sippewissett Salt Marsh\, Falmouth\, MA 2018-09-30 Salt marsh sediment 46542449 SAMN15414969 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12125091 21229 SRR12852775 AMPLICON PRJNA670253 Saltmarsh 29.254934N 90.662146W USA: Cocodrie\, LA 2018-06-15 sediment 5467229 SAMN16490720 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852775 20961 SRR12852825 AMPLICON PRJNA670253 Saltmarsh 30.107309N 84.260337W USA: St. Marks\, FL 2018-06-19 sediment 6606456 SAMN16490794 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852825 20648 SRR13379995 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-07 Salt marsh sediment 15938564 SAMN17251862 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13379995 20656 SRR13380006 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-08 Salt marsh sediment 8194041 SAMN17251893 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380006 20716 SRR13380072 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-10 Salt marsh sediment 7508365 SAMN17251945 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380072 20717 SRR13380073 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-10 Salt marsh sediment 6908112 SAMN17251944 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380073 20725 SRR13380082 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-07 Salt marsh sediment 6071421 SAMN17251792 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380082 20773 SRR13380139 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-06 Salt marsh sediment 20793825 SAMN17251820 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380139 20798 SRR13380166 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-10 Salt marsh sediment 5890318 SAMN17251804 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380166 20799 SRR13380167 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-10 Salt marsh sediment 7418631 SAMN17251803 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380167 15128 SRR14740815 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba mangrove sediment 46758000 SAMN19581190 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740815 22400 SRR17216886 AMPLICON PRJNA788471 Saltmarsh 41.59N 70.639W USA: Massachusetts 2018-05 sediment 7884788 SAMN24002238 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216886 22401 SRR17216887 AMPLICON PRJNA788471 Saltmarsh 41.59N 70.639W USA: Massachusetts 2018-05 sediment 7878946 SAMN24002237 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216887 22241 SRR27176423 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal shrub marsh soil 26374566 SAMN38763983 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176423 22244 SRR27176426 AMPLICON PRJNA1051103 Saltmarsh 30.43N 87.57W USA: Alabama\, Mobile 2021-04-21 tidal shrub marsh soil 31461756 SAMN38763981 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR27176426 21905 SRR6398151 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.38379W USA 2013-07-07 Salt marsh sediment 17845118 SAMN08214123 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398151 21906 SRR6398152 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.3837W USA 2013-07-07 Salt marsh sediment 13867646 SAMN08214116 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398152 21912 SRR6398158 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.38378W USA 2013-07-07 Salt marsh sediment 13380045 SAMN08214122 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398158 21914 SRR6398160 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.3837606W USA 2013-07-07 Salt marsh sediment 6688822 SAMN08214138 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398160 21918 SRR6398165 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.3837609W USA 2013-07-07 Salt marsh sediment 11428301 SAMN08214141 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398165 21928 SRR6398175 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.383769W USA 2013-07-07 Salt marsh sediment 5747452 SAMN08214132 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398175 21929 SRR6398176 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.383762W USA 2013-07-07 Salt marsh sediment 12102626 SAMN08214125 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398176 21933 SRR6398181 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.38376008W USA 2013-07-07 Salt marsh sediment 7609187 SAMN08214149 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398181 21936 SRR6398184 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.38376007W USA 2013-07-07 Salt marsh sediment 12818957 SAMN08214148 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398184 21940 SRR6398188 AMPLICON PRJNA423244 Saltmarsh 41.35171N 70.38376W USA 2013-07-07 Salt marsh sediment 13962225 SAMN08214113 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398188 21943 SRR6398192 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.3837W USA 2013-07-07 Salt marsh sediment 7909310 SAMN08214105 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398192 21944 SRR6398194 AMPLICON PRJNA423244 Saltmarsh 41.35173N 70.38376W USA 2013-07-07 Salt marsh sediment 16591133 SAMN08214111 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398194 21945 SRR6398195 AMPLICON PRJNA423244 Saltmarsh 41.35174N 70.38376W USA 2013-07-07 Salt marsh sediment 11920222 SAMN08214110 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398195