# Export date: 2026-06-15 14:57:38 # Microbe: Thiorhodococcus Thiorhodococcus minor (ID: 8931) # Total amplicons: 25 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 21603 SRR10200288 AMPLICON PRJNA574840 Saltmarsh 29.895448N 88.82778W USA: Chandeleur Islands 2018-05-07 salt marsh sediment 98268000 SAMN12869917 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10200288 21397 SRR11233187 AMPLICON PRJNA602775 Saltmarsh 41.7399N 69.9694W USA: Orleans\, MA marsh off of Crows Landing 2015-08-26 sediment 12926978 SAMN13950702 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233187 23647 SRR12086834 AMPLICON PRJNA641753 Seagrass 37.85 N 119.1 E China:Dongying 2019-06 Spartina alterniflora sediment 304651991 SAMN15364577 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12086834 20945 SRR12852798 AMPLICON PRJNA670253 Saltmarsh 32.751719N 79.897581W USA: Charleston\, SC 2018-06-25 sediment 85533591 SAMN16490843 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852798 20946 SRR12852800 AMPLICON PRJNA670253 Saltmarsh 32.751719N 79.897581W USA: Charleston\, SC 2018-06-25 sediment 129006137 SAMN16490841 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852800 21477 SRR12995286 AMPLICON PRJNA666636 Saltmarsh 31.38983N 81.27757W USA: Georgia 2019-07-08 Sporobolus alterniflorus sediment 43222702 SAMN16678285 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995286 20648 SRR13379995 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-07 Salt marsh sediment 15938564 SAMN17251862 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13379995 20655 SRR13380005 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-08 Salt marsh sediment 13685442 SAMN17251864 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380005 20718 SRR13380074 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-05 Salt marsh sediment 73164482 SAMN17251928 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380074 20766 SRR13380132 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 22852716 SAMN17251869 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380132 15504 SRR14741194 AMPLICON PRJNA735404 Mangrove 1.445826 N 103.767778 E Malaysia: Lim Chu Kang 2017/03/07 Sonneratia alba and Avicennia alba Sediment 57518400 SAMN19581308 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741194 17762 SRR21291233 AMPLICON PRJNA874590 Mangrove 14.60000278N 61.01000000 W Martinique:Cohe du Lamentin 2025/06/18 Mangrove sediment 25570824 SAMN30556393 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR21291233 22095 SRR23933689 AMPLICON PRJNA925448 Saltmarsh 44.616826N 67.802903W USA: Harrington\, Maine 2021-08-14 marsh sediment 65510498 SAMN33188431 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23933689 22100 SRR23933743 AMPLICON PRJNA925448 Saltmarsh 44.616826N 67.802903W USA: Harrington\, Maine 2021-06-25 marsh sediment 135641404 SAMN33188457 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23933743 22102 SRR23933819 AMPLICON PRJNA925448 Saltmarsh 43.2926N 70.5725W USA: Wells\, Maine 2021-06-25 marsh sediment 42478738 SAMN33188475 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23933819 18302 SRR25047415 AMPLICON PRJNA988256 Mangrove 1.4450 N 103.7335 E Singapore: Sungei Buloh Wetland Reserve 2021/07/27 sediment sediment 68059110 SAMN36011652 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047415 18370 SRR25047483 AMPLICON PRJNA988256 Mangrove 1.4459 N 103.7078 E Singapore: Lim Chu Kang 2021/07/28 sediment sediment 63175084 SAMN36011559 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047483 18373 SRR25047486 AMPLICON PRJNA988256 Mangrove 1.4459 N 103.7078 E Singapore: Lim Chu Kang 2021/07/28 plastic plastic 68569606 SAMN36011556 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047486 18379 SRR25047492 AMPLICON PRJNA988256 Mangrove 1.4459 N 103.7078 E Singapore: Lim Chu Kang 2021/07/28 plastic plastic 44828532 SAMN36011551 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047492 18380 SRR25047493 AMPLICON PRJNA988256 Mangrove 1.4459 N 103.7078 E Singapore: Lim Chu Kang 2021/07/28 plastic plastic 45372138 SAMN36011550 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047493 18381 SRR25047494 AMPLICON PRJNA988256 Mangrove 1.4459 N 103.7078 E Singapore: Lim Chu Kang 2021/07/28 plastic plastic 51858688 SAMN36011549 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047494 18382 SRR25047495 AMPLICON PRJNA988256 Mangrove 1.4459 N 103.7078 E Singapore: Lim Chu Kang 2021/07/28 plastic plastic 69337758 SAMN36011548 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047495 16752 SRR9894712 AMPLICON PRJNA558367 Mangrove 26.26172768 S 48.64755871 W Brazil: Santa Catarina 2025/12/15 Mangrove mangrove sediment 57371720 SAMN12444328 SINGLE Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9894712 16753 SRR9894713 AMPLICON PRJNA558367 Mangrove 26.26207412 S 48.64777193 W Brazil: Santa Catarina 2025/12/15 Mangrove mangrove sediment 88959045 SAMN12444329 SINGLE Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9894713 16760 SRR9894720 AMPLICON PRJNA558367 Mangrove 26.26130825 S 48.64729691 W Brazil: Santa Catarina 2025/12/15 Mangrove mangrove sediment 72836135 SAMN12444330 SINGLE Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9894720