# Export date: 2026-06-15 14:56:10 # Microbe: Thiohalocapsa_602915 (ID: 8933) # Total amplicons: 56 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 19889 SRR10093021 AMPLICON PRJNA564581 Seaweed 48.68361111N 3.9575W France 2017/09/23 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 37928063 SAMN12716458 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10093021 23364 SRR11489865 AMPLICON PRJNA623164 Seagrass 30.0472 N 84.1666 W USA: Florida\, Apalachee Bay 2016-09-21 Thalassia testudinum blade surface 13341274 SAMN14540259 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11489865 23379 SRR11489880 AMPLICON PRJNA623164 Seagrass 30.0553 N 84.1664 W USA: Florida\, Apalachee Bay 2016-09-21 Thalassia testudinum blade surface 10464260 SAMN14540245 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11489880 23387 SRR11489888 AMPLICON PRJNA623164 Seagrass 30.0553 N 84.1664 W USA: Florida\, Apalachee Bay 2016-07-22 Thalassia testudinum blade surface 13087380 SAMN14540238 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11489888 23389 SRR11489890 AMPLICON PRJNA623164 Seagrass 30.0631 N 84.1665 W USA: Florida\, Apalachee Bay 2016-09-21 Thalassia testudinum blade surface 29813694 SAMN14540236 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11489890 23396 SRR11489897 AMPLICON PRJNA623164 Seagrass 30.0631 N 84.1665 W USA: Florida\, Apalachee Bay 2016-08-20 Thalassia testudinum blade surface 8884357 SAMN14540231 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11489897 23415 SRR11489916 AMPLICON PRJNA623164 Seagrass 30.0419 N 84.1663 W USA: Florida\, Apalachee Bay 2016-09-21 Thalassia testudinum blade surface 9461240 SAMN14540273 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11489916 23420 SRR11489921 AMPLICON PRJNA623164 Seagrass 30.0419 N 84.1663 W USA: Florida\, Apalachee Bay 2016-08-20 Thalassia testudinum blade surface 5970804 SAMN14540269 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11489921 23421 SRR11489922 AMPLICON PRJNA623164 Seagrass 30.0419 N 84.1663 W USA: Florida\, Apalachee Bay 2016-08-20 Thalassia testudinum blade surface 5762589 SAMN14540268 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11489922 20566 SRR12125039 AMPLICON PRJNA643437 Saltmarsh 41.5758N 70.6394W USA: Little Sippewissett Salt Marsh\, Falmouth\, MA 2018-09-30 Salt marsh sediment 55687641 SAMN15414990 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12125039 20567 SRR12125040 AMPLICON PRJNA643437 Saltmarsh 41.5758N 70.6394W USA: Little Sippewissett Salt Marsh\, Falmouth\, MA 2018-09-30 Salt marsh sediment 64449915 SAMN15414960 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12125040 20569 SRR12125042 AMPLICON PRJNA643437 Saltmarsh 41.5758N 70.6394W USA: Little Sippewissett Salt Marsh\, Falmouth\, MA 2018-09-30 Salt marsh sediment 50206200 SAMN15414968 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12125042 20570 SRR12125043 AMPLICON PRJNA643437 Saltmarsh 41.5758N 70.6394W USA: Little Sippewissett Salt Marsh\, Falmouth\, MA 2018-09-30 Salt marsh sediment 56499010 SAMN15414964 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12125043 20577 SRR12125051 AMPLICON PRJNA643437 Saltmarsh 41.5758N 70.6394W USA: Little Sippewissett Salt Marsh\, Falmouth\, MA 2018-09-30 Salt marsh sediment 125860707 SAMN15414954 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12125051 20578 SRR12125052 AMPLICON PRJNA643437 Saltmarsh 41.5758N 70.6394W USA: Little Sippewissett Salt Marsh\, Falmouth\, MA 2018-09-30 Salt marsh sediment 48438016 SAMN15414994 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12125052 20583 SRR12125057 AMPLICON PRJNA643437 Saltmarsh 41.5758N 70.6394W USA: Little Sippewissett Salt Marsh\, Falmouth\, MA 2018-09-30 Salt marsh sediment 45750440 SAMN15414971 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12125057 20591 SRR12125066 AMPLICON PRJNA643437 Saltmarsh 41.5758N 70.6394W USA: Little Sippewissett Salt Marsh\, Falmouth\, MA 2018-09-30 Salt marsh sediment 17375452 SAMN15414980 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12125066 20614 SRR12125093 AMPLICON PRJNA643437 Saltmarsh 41.5758N 70.6394W USA: Little Sippewissett Salt Marsh\, Falmouth\, MA 2018-09-30 Salt marsh sediment 45542714 SAMN15414995 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12125093 20636 SRR13379980 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-08 Salt marsh sediment 14072914 SAMN17251800 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13379980 20639 SRR13379984 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-06 Salt marsh sediment 6243719 SAMN17251886 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13379984 20642 SRR13379988 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-06 Salt marsh sediment 20359799 SAMN17251872 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13379988 20645 SRR13379991 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-08 Salt marsh sediment 6496322 SAMN17251799 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13379991 20648 SRR13379995 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-07 Salt marsh sediment 15938564 SAMN17251862 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13379995 20650 SRR13379998 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-07 Salt marsh sediment 12640156 SAMN17251878 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13379998 20659 SRR13380009 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-08 Salt marsh sediment 5797270 SAMN17251909 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380009 20663 SRR13380014 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-04 Salt marsh sediment 4987612 SAMN17251903 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380014 20679 SRR13380030 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 38645248 SAMN17251817 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380030 20680 SRR13380031 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 35321681 SAMN17251816 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380031 20685 SRR13380037 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-06 Salt marsh sediment 43486618 SAMN17251834 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380037 20688 SRR13380040 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-06 Salt marsh sediment 29954109 SAMN17251823 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380040 20697 SRR13380050 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 30057650 SAMN17251770 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380050 20705 SRR13380059 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-06 Salt marsh sediment 35292325 SAMN17251777 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380059 20708 SRR13380062 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-06 Salt marsh sediment 30982034 SAMN17251774 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380062 20709 SRR13380063 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-06 Salt marsh sediment 37883305 SAMN17251773 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380063 20718 SRR13380074 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-05 Salt marsh sediment 73164482 SAMN17251928 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380074 20723 SRR13380079 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 41902338 SAMN17251914 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380079 20733 SRR13380092 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-06 Salt marsh sediment 30108713 SAMN17251916 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380092 20749 SRR13380113 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-08 Salt marsh sediment 11067651 SAMN17251955 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380113 20751 SRR13380115 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-07 Salt marsh sediment 33892509 SAMN17251779 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380115 20761 SRR13380127 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-05 Salt marsh sediment 6498951 SAMN17251884 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380127 20765 SRR13380131 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-05 Salt marsh sediment 45435556 SAMN17251880 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380131 20766 SRR13380132 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 22852716 SAMN17251869 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380132 20767 SRR13380133 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 32115236 SAMN17251868 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380133 20769 SRR13380135 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 10932703 SAMN17251866 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380135 20771 SRR13380137 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-06 Salt marsh sediment 48154905 SAMN17251822 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380137 20780 SRR13380146 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-07 Salt marsh sediment 39571938 SAMN17251767 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380146 20781 SRR13380147 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-07 Salt marsh sediment 35629072 SAMN17251825 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380147 20785 SRR13380151 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-08 Salt marsh sediment 14283089 SAMN17251812 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380151 20786 SRR13380152 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-08 Salt marsh sediment 6346256 SAMN17251842 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380152 24015 SRR19242045 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Tanmen 2021-01 seagrass seawater 53971500 SAMN28462882 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242045 24035 SRR19242065 AMPLICON PRJNA838654 Seagrass NA China:Hainan\,Xincun 2020-11 seagrass seawater 54231000 SAMN28462864 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19242065 17674 SRR23961224 AMPLICON PRJNA774281 Mangrove 25.1005098 N 80.43914361 W USA: Florida Keys\, Florida 1905/07/06 Mangrove plant matter 35362098 SAMN33844850 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR23961224 17683 SRR23961233 AMPLICON PRJNA774281 Mangrove 25.1005098 N 80.43914361 W USA: Florida Keys\, Florida 1905/07/06 Mangrove plant matter 31758176 SAMN33844851 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR23961233 24381 SRR25047764 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere high hydrogen sulphide area 48864942 SAMN36015170 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047764 21932 SRR6398179 AMPLICON PRJNA423244 Saltmarsh 41.35177N 70.383765W USA 2013-07-07 Salt marsh sediment 11092099 SAMN08214128 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398179 21940 SRR6398188 AMPLICON PRJNA423244 Saltmarsh 41.35171N 70.38376W USA 2013-07-07 Salt marsh sediment 13962225 SAMN08214113 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6398188