# Export date: 2026-06-14 18:16:28 # Microbe: Shewanella Shewanella aestuarii (ID: 9052) # Total amplicons: 65 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 19546 ERR2508758 AMPLICON PRJEB25951 Seaweed 49.291801N 122.889612W CAN:Calvert 2016-03,2016-08 biofilm 5007681 SAMEA1100065 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR2508758 19551 ERR2508763 AMPLICON PRJEB25951 Seaweed 49.291801N 122.889612W CAN:Calvert 2016-03,2016-08 biofilm 4096273 SAMEA1100070 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR2508763 19570 ERR2508782 AMPLICON PRJEB25951 Seaweed 49.291801N 122.889612W CAN:Calvert 2016-03,2016-08 biofilm 10594082 SAMEA1100089 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR2508782 19601 ERR2508813 AMPLICON PRJEB25951 Seaweed 49.291801N 122.889612W CAN:Calvert 2016-03,2016-08 biofilm 7458129 SAMEA1100121 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR2508813 19605 ERR2508817 AMPLICON PRJEB25951 Seaweed 49.291801N 122.889612W CAN:Calvert 2016-03,2016-08 biofilm 15144466 SAMEA1100126 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR2508817 19658 SRR10092790 AMPLICON PRJNA564581 Seaweed 38.90111111N 141.6225E Japan 2017/08/28 Gracilaria vermiculophylla/Agarophyton vermiculophyllum saline water 37866631 SAMN12716353 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092790 19680 SRR10092812 AMPLICON PRJNA564581 Seaweed 37.920179N 122.671616W USA 2017/09/21 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 41076044 SAMN12716527 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092812 19681 SRR10092813 AMPLICON PRJNA564581 Seaweed 37.920179N 122.671616W USA 2017/09/21 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 21537143 SAMN12716526 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092813 19688 SRR10092820 AMPLICON PRJNA564581 Seaweed 37.920179N 122.671616W USA 2017/09/21 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 414858 SAMN12716520 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092820 19762 SRR10092894 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/13 Gracilaria vermiculophylla/Agarophyton vermiculophyllum saline water 1457415 SAMN12716486 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092894 19780 SRR10092912 AMPLICON PRJNA564581 Seaweed 43.04777778N 144.94972222E Japan 2016/09/15 Gracilaria vermiculophylla/Agarophyton vermiculophyllum saline water 28264875 SAMN12716387 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092912 19787 SRR10092919 AMPLICON PRJNA564581 Seaweed 43.04777778N 144.94972222E Japan 2016/09/15 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 36648932 SAMN12716374 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092919 19807 SRR10092939 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/20 Gracilaria vermiculophylla/Agarophyton vermiculophyllum saline water 27627037 SAMN12716482 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092939 19809 SRR10092941 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/20 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 47976079 SAMN12716474 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092941 19810 SRR10092942 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/20 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 45965226 SAMN12716473 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092942 19811 SRR10092943 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/20 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 61360634 SAMN12716472 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092943 19813 SRR10092945 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/20 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 62756019 SAMN12716471 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092945 19814 SRR10092946 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/20 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 27488033 SAMN12716470 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092946 19815 SRR10092947 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/20 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 29157390 SAMN12716469 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092947 19816 SRR10092948 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/20 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 24290697 SAMN12716468 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092948 19835 SRR10092967 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/13 Gracilaria vermiculophylla/Agarophyton vermiculophyllum saline water 1639442 SAMN12716485 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092967 19837 SRR10092969 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/13 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 28503121 SAMN12716480 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092969 19838 SRR10092970 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/13 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 15970720 SAMN12716479 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092970 19839 SRR10092971 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/13 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 25317110 SAMN12716478 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092971 19840 SRR10092972 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/13 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 14670660 SAMN12716477 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092972 19841 SRR10092973 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/13 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 25151892 SAMN12716476 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092973 19842 SRR10092974 AMPLICON PRJNA564581 Seaweed 54.36388889N 10.19361111E Germany 2017/09/13 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 27495105 SAMN12716475 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092974 19875 SRR10093007 AMPLICON PRJNA564581 Seaweed 37.957186N 75.024576W USA 2017/09/08 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 39034784 SAMN12716577 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10093007 19877 SRR10093009 AMPLICON PRJNA564581 Seaweed 37.957186N 75.024576W USA 2017/09/08 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 17068033 SAMN12716575 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10093009 19890 SRR10093022 AMPLICON PRJNA564581 Seaweed 48.51472222N 1.96972222W France 2017/09/21 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 12533866 SAMN12716448 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10093022 20824 SRR11232927 AMPLICON PRJNA602775 Saltmarsh 41.7123N 69.9956W USA: Harwich\, MA Muddy Creek Marsh 2017-06 sediment 18339272 SAMN13950599 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11232927 20869 SRR11233196 AMPLICON PRJNA602775 Saltmarsh 41.712N 69.9955W USA: Harwich\, MA Muddy Creek Marsh 2017-06 sediment 9255830 SAMN13950581 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233196 21611 SRR11772251 AMPLICON PRJNA631747 Saltmarsh 42.78594979N 70.83731232W USA 2016 Sporobolus alterniflorus sediment 5081028422 SAMN14891083 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11772251 20621 SRR12228830 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus bulk soil 16847000 SAMN10953580 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228830 20622 SRR12228831 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus bulk soil 81997000 SAMN10953579 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228831 22406 SRR17216892 AMPLICON PRJNA788471 Saltmarsh 43.125N 70.868W USA: New Hampshire 2018-07 sediment 7883571 SAMN24002232 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216892 17844 SRR17658361 AMPLICON PRJNA798089 Mangrove 33.8568146 S 151.1966489 E Australia: Illoura Reserve\, Sydney 2020/11/02 marine biofilm biofilm 47115733 SAMN25078398 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR17658361 24364 SRR25047733 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-31 Zostera marina rhizosphere bulk sediment 54817518 SAMN36015149 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047733 24373 SRR25047752 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-31 Zostera marina rhizosphere bulk sediment 70207648 SAMN36015142 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047752 24376 SRR25047759 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere bulk sediment 63766248 SAMN36015172 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047759 24377 SRR25047760 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere bulk sediment 63720496 SAMN36015174 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047760 24378 SRR25047761 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere bulk sediment 59384290 SAMN36015173 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047761 24381 SRR25047764 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere high hydrogen sulphide area 48864942 SAMN36015170 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047764 24383 SRR25047766 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere bulk sediment 59953180 SAMN36015168 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047766 24396 SRR25047779 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor Zostera marina rhizosphere bulk sediment 52062766 SAMN36015157 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047779 24400 SRR25047783 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor Zostera marina rhizosphere high hydrogen sulphide area 38582180 SAMN36015154 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047783 22702 SRR26898561 AMPLICON PRJNA1042847 Seagrass NA China: Qinhuangdao 2022-09 seagrass coastal seawater 40218500 SAMN38338631 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR26898561 21949 SRR5486563 AMPLICON PRJNA384656 Saltmarsh 32.5576N 80.4365W USA:South Carolina\,ACE Basin Wildlife Refuge 2010-10-10 salt marsh tidal mudflat 73116802 SAMN06843733 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486563 22781 SRR5675546 AMPLICON PRJNA389390 Seagrass 54.59808 N 13.21117 E Germany:Baltic Sea 2015-08 Zostera marina seawater 17599324 SAMN07197202 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5675546 22782 SRR5675547 AMPLICON PRJNA389390 Seagrass 54.59808 N 13.21117 E Germany:Baltic Sea 2015-08 Zostera marina seawater 12467158 SAMN07197203 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5675547 22783 SRR5675548 AMPLICON PRJNA389390 Seagrass 54.60116 N 13.15891 E Germany:Baltic Sea 2015-08 Zostera marina seawater 18096643 SAMN07197194 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5675548 22784 SRR5675549 AMPLICON PRJNA389390 Seagrass 54.60116 N 13.15891 E Germany:Baltic Sea 2015-08 Zostera marina seawater 30443461 SAMN07197195 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5675549 22785 SRR5675550 AMPLICON PRJNA389390 Seagrass 54.60116 N 13.15891 E Germany:Baltic Sea 2015-08 Zostera marina seawater 10519130 SAMN07197196 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5675550 22786 SRR5675551 AMPLICON PRJNA389390 Seagrass 54.60116 N 13.15891 E Germany:Baltic Sea 2015-08 Zostera marina seawater 10473549 SAMN07197197 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5675551 22787 SRR5675552 AMPLICON PRJNA389390 Seagrass 54.60116 N 13.15891 E Germany:Baltic Sea 2015-08 Zostera marina seawater 32450226 SAMN07197198 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5675552 22788 SRR5675553 AMPLICON PRJNA389390 Seagrass 54.59808 N 13.21117 E Germany:Baltic Sea 2015-08 Zostera marina seawater 10928396 SAMN07197199 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5675553 22789 SRR5675554 AMPLICON PRJNA389390 Seagrass 54.59808 N 13.21117 E Germany:Baltic Sea 2015-08 Zostera marina seawater 10442792 SAMN07197200 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5675554 22790 SRR5675555 AMPLICON PRJNA389390 Seagrass 54.59808 N 13.21117 E Germany:Baltic Sea 2015-08 Zostera marina seawater 19834392 SAMN07197201 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5675555 22808 SRR5675573 AMPLICON PRJNA389390 Seagrass 54.61305 N 13.17829 E Germany:Baltic Sea 2015-08 Zostera marina seawater 16796799 SAMN07197206 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5675573 22825 SRR5675590 AMPLICON PRJNA389390 Seagrass 54.51144 N 13.14459 E Germany:Baltic Sea 2015-08 Zostera marina seawater 20472014 SAMN07197216 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5675590 22828 SRR5675593 AMPLICON PRJNA389390 Seagrass 54.51144 N 13.14459 E Germany:Baltic Sea 2015-08 Zostera marina seawater 24826961 SAMN07197215 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5675593 22903 SRR6424044 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914474 E Taiwan 2015-02-15 seagrass root 46374468 SAMN08222587 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424044 22904 SRR6424045 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914476 E Taiwan 2015-02-15 seagrass rhizosphere 69284180 SAMN08222589 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424045 22910 SRR6424051 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914472 E Taiwan 2015-02-15 seagrass sediment 76136746 SAMN08222585 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424051 20900 SRR9597789 AMPLICON PRJNA551237 Saltmarsh 40.618433N 73.834383W USA:New York\,Jamaica Bay 2015-07 Salt marsh sediment 1724128352 SAMN12142399 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR9597789