# Export date: 2026-06-15 12:06:56 # Microbe: Shewanella Shewanella carassii (ID: 9058) # Total amplicons: 46 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 20025 SRR10030032 AMPLICON PRJNA562320 Seaweed 5.6195748N 100.2949879E Malaysia: Kedah\, Kuala Muda 2016/05/10 Gracilaria sp. Plant 76830000 SAMN12638440 PAIRED Illumina HiSeq 1000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10030032 23330 SRR11354710 AMPLICON PRJNA613355 Seagrass 37.35 N 122.57 E China:Rongcheng 2019-06-10 seagrass sediment 39323242 SAMN14404005 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11354710 23331 SRR11354711 AMPLICON PRJNA613355 Seagrass 37.35 N 122.57 E China:Rongcheng 2019-06-10 seagrass sediment 37324000 SAMN14404004 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11354711 23333 SRR11354713 AMPLICON PRJNA613355 Seagrass 37.35 N 122.57 E China:Rongcheng 2019-06-10 seagrass sediment 36576918 SAMN14404002 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11354713 23338 SRR11354718 AMPLICON PRJNA613355 Seagrass 37.35 N 122.57 E China:Rongcheng 2019-06-10 Zostera japonica sediment 30672502 SAMN14404028 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11354718 23340 SRR11354720 AMPLICON PRJNA613355 Seagrass 37.35 N 122.57 E China:Rongcheng 2019-06-10 Zostera marina sediment 40247312 SAMN14404000 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11354720 23343 SRR11354723 AMPLICON PRJNA613355 Seagrass 37.35 N 122.57 E China:Rongcheng 2019-06-10 Zostera japonica sediment 33618088 SAMN14404024 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11354723 23351 SRR11354731 AMPLICON PRJNA613355 Seagrass 37.35 N 122.57 E China:Rongcheng 2019-06-10 Zostera japonica sediment 44469138 SAMN14403999 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11354731 23363 SRR11354743 AMPLICON PRJNA613355 Seagrass 37.35 N 122.57 E China:Rongcheng 2019-06-10 seagrass sediment 42834708 SAMN14403997 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11354743 16703 SRR11930140 AMPLICON PRJNA603641 Mangrove 21.9497 N 89.1833 E India: Sundarban 2018/12/05 Mangrove mangrove sediments 832697366 SAMN15143744 PAIRED Illumina HiSeq 2500 METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11930140 20616 SRR12228798 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus maritimus rhizosphere 133311500 SAMN10953563 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228798 20618 SRR12228803 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus alterniflorus rhizosphere 36028000 SAMN10953560 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228803 20619 SRR12228814 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus alterniflorus rhizosphere 61578500 SAMN10953559 PAIRED Illumina MiSeq METAGENOMIC ITS https://www.ncbi.nlm.nih.gov/sra/SRR12228814 20620 SRR12228825 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus alterniflorus rhizosphere 41594000 SAMN10953558 PAIRED Illumina MiSeq METAGENOMIC ITS https://www.ncbi.nlm.nih.gov/sra/SRR12228825 20630 SRR12228840 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 96120000 SAMN10953571 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228840 20631 SRR12228842 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 42956000 SAMN10953569 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228842 20632 SRR12228844 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 175354000 SAMN10953567 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228844 20634 SRR12228846 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus maritimus rhizosphere 63238500 SAMN10953565 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228846 23719 SRR15068629 AMPLICON PRJNA744715 Seagrass 37.2 N 122.34 E China:Weihai 2019-06 Zostera japonica sediment 378809029 SAMN20115027 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR15068629 23721 SRR15068631 AMPLICON PRJNA744715 Seagrass 37.2 N 122.34 E China:Weihai 2019-06 Zostera japonica sediment 336317818 SAMN20115025 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR15068631 14813 SRR15928130 AMPLICON PRJNA764039 Mangrove 16.3862 S 145.5638 E Australia: GBR 2018/11/21 coral coral 64947658 SAMN21467038 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR15928130 23833 SRR18298354 AMPLICON PRJNA774145 Seagrass 19.544158 N 85.162298 E India 2018-04-26 seagrass sediment 4980082 SAMN22568799 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298354 23838 SRR18298359 AMPLICON PRJNA774145 Seagrass 19.547539 N 85.165133 E India 2018-04-26 seagrass sediment 4477969 SAMN22568795 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298359 23914 SRR18298435 AMPLICON PRJNA774145 Seagrass 19.569175 N 85.170855 E India 2018-04-26 seagrass sediment 22327393 SAMN22568780 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298435 23917 SRR18298438 AMPLICON PRJNA774145 Seagrass 19.574318 N 85.170321 E India 2018-04-26 seagrass sediment 20185687 SAMN22568776 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298438 23925 SRR18298446 AMPLICON PRJNA774145 Seagrass 19.586377 N 85.168426 E India 2018-04-26 seagrass sediment 8808154 SAMN22568766 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298446 23930 SRR18298451 AMPLICON PRJNA774145 Seagrass 19.59571 N 85.170016 E India 2018-04-26 seagrass sediment 23424765 SAMN22568760 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR18298451 22040 SRR22025447 AMPLICON PRJNA893704 Saltmarsh 38.74721N 76.36911W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 75468584 SAMN31431884 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025447 22041 SRR22025448 AMPLICON PRJNA893704 Saltmarsh 38.74721N 76.36911W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 68365447 SAMN31431883 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025448 22045 SRR22025452 AMPLICON PRJNA893704 Saltmarsh 38.74663N 76.37007W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 98923003 SAMN31431879 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025452 18215 SRR25047328 AMPLICON PRJNA988256 Mangrove 1.2663 N 103.8010 E Singapore: Labrador Park 2021/07/12 seawater seawater 68923582 SAMN36011571 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047328 18305 SRR25047418 AMPLICON PRJNA988256 Mangrove 1.4450 N 103.7335 E Singapore: Sungei Buloh Wetland Reserve 2021/07/27 plastic plastic 85012634 SAMN36011650 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047418 18329 SRR25047442 AMPLICON PRJNA988256 Mangrove 1.4101 N 103.9907 E Singapore: Pulau Ubin Chek Jawa 2021/07/15 seawater seawater 72386286 SAMN36011628 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047442 18335 SRR25047448 AMPLICON PRJNA988256 Mangrove 1.4101 N 103.9907 E Singapore: Pulau Ubin Chek Jawa 2021/07/15 plastic plastic 63802970 SAMN36011622 PAIRED Illumina MiSeq GENOMIC 16S、18S https://www.ncbi.nlm.nih.gov/sra/SRR25047448 21970 SRR5486589 AMPLICON PRJNA384656 Saltmarsh 32.5576N 80.4365W USA:South Carolina\,ACE Basin Wildlife Refuge 2010-10-10 salt marsh tidal mudflat 38817150 SAMN06843707 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486589 15850 SRR5814388 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 82473348 SAMN07338412 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5814388 16435 SRR5886356 AMPLICON PRJNA339628 Mangrove 22.20 N 39.5 E Saudi Arabia: KAUST 2025/03/16 Mangrove Sediment 141965325 SAMN06834569 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5886356 16490 SRR5886412 AMPLICON PRJNA339628 Mangrove 22.20 N 39.5 E Saudi Arabia: KAUST 2025/03/16 Mangrove Sediment 19319853 SAMN06834610 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5886412 16564 SRR5886486 AMPLICON PRJNA339628 Mangrove 22.20 N 39.5 E Saudi Arabia: KAUST 2025/03/16 Mangrove Sediment 180845734 SAMN06834563 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5886486 17052 SRR6200853 AMPLICON PRJNA415044 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove sediment 52669238 SAMN07813293 PAIRED Illumina MiSeq METAGENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR6200853 17075 SRR6200876 AMPLICON PRJNA415044 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove sediment 94165664 SAMN07813316 PAIRED Illumina MiSeq METAGENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR6200876 21778 SRR7877465 AMPLICON PRJNA491859 Saltmarsh 42.0387N 70.2048W USA: West End Marsh\, Provincetown\, Massachusetts 2016-08-01 Salt marsh sediment 54666077 SAMN10092108 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR7877465 21853 SRR7877546 AMPLICON PRJNA491859 Saltmarsh 42.0387N 70.2048W USA: West End Marsh\, Provincetown\, Massachusetts 2016-07-18 Salt marsh sediment 45590770 SAMN10092078 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR7877546 16640 SRR9593104 AMPLICON PRJNA550512 Mangrove 6.9493889 N 100.826722 E Thailand 2018/04/01 Mud estuarine mud 53085658 SAMN12124978 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593104 20900 SRR9597789 AMPLICON PRJNA551237 Saltmarsh 40.618433N 73.834383W USA:New York\,Jamaica Bay 2015-07 Salt marsh sediment 1724128352 SAMN12142399 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR9597789