# Export date: 2026-06-15 21:43:53 # Microbe: Photobacterium Photobacterium lipolyticum (ID: 9120) # Total amplicons: 70 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 22600 ERR7421942 AMPLICON PRJEB48899 Seagrass NA Cymodocea nodosa sediment 9087204 SAMEA11293319 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR7421942 22616 ERR7421958 AMPLICON PRJEB48899 Seagrass NA Cymodocea nodosa sediment 26830376 SAMEA11293335 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR7421958 22619 ERR7421961 AMPLICON PRJEB48899 Seagrass NA Cymodocea nodosa sediment 8841726 SAMEA11293338 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR7421961 22632 ERR7421974 AMPLICON PRJEB48899 Seagrass NA Cymodocea nodosa sediment 28300264 SAMEA11293351 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR7421974 23110 SRR10060499 AMPLICON PRJNA563200 Seagrass 32.17 S 115.73 E Australia: Cockburn Sound 2018-10 Posidonia australis Posidonia australis 43969200 SAMN12670158 PAIRED Illumina MiSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR10060499 23328 SRR11249258 AMPLICON PRJNA610593 Seagrass 39.313109 N 2.98877 E Spain 2019-02 Posidonia oceanica root 6382569697 SAMN14306704 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11249258 21611 SRR11772251 AMPLICON PRJNA631747 Saltmarsh 42.78594979N 70.83731232W USA 2016 Sporobolus alterniflorus sediment 5081028422 SAMN14891083 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11772251 23656 SRR12086843 AMPLICON PRJNA641753 Seagrass 37.85 N 119.1 E China:Dongying 2019-06 Spartina alterniflora sediment 300990431 SAMN15364581 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12086843 15023 SRR12164890 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 98471946 SAMN15447432 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164890 20626 SRR12228836 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus alterniflorus rhizosphere 206085000 SAMN10953557 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228836 20627 SRR12228837 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 106605500 SAMN10953574 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228837 20932 SRR12852772 AMPLICON PRJNA670253 Saltmarsh 34.06296N 77.88649W USA: Wilmington\, NC 2018-06-27 sediment 7404675 SAMN16490866 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852772 20933 SRR12852774 AMPLICON PRJNA670253 Saltmarsh 34.06296N 77.88649W USA: Wilmington\, NC 2018-06-27 sediment 4266795 SAMN16490864 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852774 20934 SRR12852779 AMPLICON PRJNA670253 Saltmarsh 34.06296N 77.88649W USA: Wilmington\, NC 2018-06-27 sediment 2953211 SAMN16490860 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852779 20942 SRR12852794 AMPLICON PRJNA670253 Saltmarsh 32.751719N 79.897581W USA: Charleston\, SC 2018-06-25 sediment 83490883 SAMN16490846 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852794 21235 SRR12852799 AMPLICON PRJNA670253 Saltmarsh 32.751719N 79.897581W USA: Charleston\, SC 2018-06-25 sediment 49826455 SAMN16490842 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852799 20955 SRR12852814 AMPLICON PRJNA670253 Saltmarsh 29.762475N 81.264453W USA: St. Augustine\, FL 2018-06-22 sediment 52385992 SAMN16490828 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852814 20973 SRR12852842 AMPLICON PRJNA670253 Saltmarsh 29.62861N 85.09056W USA: Apalachicola\, FL 2018-06-20 sediment 5084966 SAMN16490779 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852842 20974 SRR12852844 AMPLICON PRJNA670253 Saltmarsh 29.62861N 85.09056W USA: Apalachicola\, FL 2018-06-20 sediment 3569662 SAMN16490777 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852844 20975 SRR12852846 AMPLICON PRJNA670253 Saltmarsh 29.62861N 85.09056W USA: Apalachicola\, FL 2018-06-20 sediment 5113183 SAMN16490775 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852846 20976 SRR12852847 AMPLICON PRJNA670253 Saltmarsh 29.62861N 85.09056W USA: Apalachicola\, FL 2018-06-20 sediment 6452788 SAMN16490774 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852847 21267 SRR12852895 AMPLICON PRJNA670253 Saltmarsh 29.762475N 81.264453W USA: St. Augustine\, FL 2018-06-22 sediment 72453439 SAMN16490825 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852895 21006 SRR12852896 AMPLICON PRJNA670253 Saltmarsh 29.762475N 81.264453W USA: St. Augustine\, FL 2018-06-22 sediment 91728560 SAMN16490824 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852896 21268 SRR12852899 AMPLICON PRJNA670253 Saltmarsh 29.762475N 81.264453W USA: St. Augustine\, FL 2018-06-22 sediment 40890388 SAMN16490822 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852899 21009 SRR12852900 AMPLICON PRJNA670253 Saltmarsh 29.762475N 81.264453W USA: St. Augustine\, FL 2018-06-22 sediment 34354674 SAMN16490821 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852900 21269 SRR12852901 AMPLICON PRJNA670253 Saltmarsh 29.762475N 81.264453W USA: St. Augustine\, FL 2018-06-22 sediment 56148738 SAMN16490820 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852901 21010 SRR12852902 AMPLICON PRJNA670253 Saltmarsh 29.171337N 83.025477W USA: Cedar Key\, FL 2018-06-21 sediment 2320457 SAMN16490819 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12852902 21441 SRR12995244 AMPLICON PRJNA666636 Saltmarsh 31.38866N 81.27693W USA: Georgia 2018-07-10 Sporobolus alterniflorus plant 42133362 SAMN16678267 PAIRED Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR12995244 15240 SRR14740927 AMPLICON PRJNA735404 Mangrove 5.534833 N 102.944331 E Malaysia: Merang 2017/03/07 Sonneratia alba and Avicennia alba Pneumatophore 78574200 SAMN19581089 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14740927 15355 SRR14741042 AMPLICON PRJNA735404 Mangrove 1.445826 N 103.707778 E Malaysia: Lim Chu Kang 2017/03/07 Sonneratia alba and Avicennia alba Sediment 47463000 SAMN19580985 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741042 15361 SRR14741048 AMPLICON PRJNA735404 Mangrove 1.445826 N 103.707778 E Malaysia: Lim Chu Kang 2017/03/07 Sonneratia alba and Avicennia alba Sediment 49446000 SAMN19580980 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741048 15620 SRR14741310 AMPLICON PRJNA735404 Mangrove 1.438302 N 103.752878 E Malaysia: Kranji 2017/03/07 Sonneratia alba and Avicennia alba Sediment 53562600 SAMN19580898 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR14741310 23732 SRR15068642 AMPLICON PRJNA744715 Seagrass 37.2 N 122.34 E China:Weihai 2019-06 Zostera japonica sediment 602979029 SAMN20115024 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR15068642 24084 SRR19536377 AMPLICON PRJNA845084 Seagrass 35.47 S 138.29 E Australia: Lady bay\, South Australia 2019 Posidonia angustifolia sediment 34875469 SAMN28854759 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19536377 24126 SRR23715712 AMPLICON PRJNA925291 Seagrass 33.102462 S 151.565207 E Australia: Johnys Point 2020-09-08 Zostera muelleri Estuarine sediment 94640452 SAMN33555418 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23715712 24358 SRR25047727 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-31 Zostera marina rhizosphere bulk sediment 47502616 SAMN36015130 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047727 24364 SRR25047733 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-31 Zostera marina rhizosphere bulk sediment 54817518 SAMN36015149 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047733 24365 SRR25047734 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-31 Zostera marina rhizosphere bulk sediment 65847964 SAMN36015148 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047734 24368 SRR25047737 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-31 Zostera marina rhizosphere high hydrogen sulphide area 59956190 SAMN36015146 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047737 24369 SRR25047738 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-31 Zostera marina rhizosphere high hydrogen sulphide area 53916926 SAMN36015145 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047738 24373 SRR25047752 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-31 Zostera marina rhizosphere bulk sediment 70207648 SAMN36015142 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047752 24383 SRR25047766 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-12-18 Zostera marina rhizosphere bulk sediment 59953180 SAMN36015168 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047766 24394 SRR25047777 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor Zostera marina rhizosphere bulk sediment 45472070 SAMN36015159 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047777 24398 SRR25047781 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor Zostera marina rhizosphere high hydrogen sulphide area 39458692 SAMN36015156 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047781 24404 SRR25047813 AMPLICON PRJNA988287 Seagrass 56.05811111 N 12.57797222 E Denmark: coastal site near Elsinor 2019-10-24 Zostera marina rhizosphere bulk sediment 33550664 SAMN36015123 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR25047813 18097 SRR25728327 AMPLICON PRJNA1007244 Mangrove 20.243389S 106.574778 E Viet Nam: Nam Dinh 2025/04/19 Kandelia obovata estuarine mud 32725322 SAMN37055115 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR25728327 22708 SRR26898567 AMPLICON PRJNA1042847 Seagrass NA China: Qinhuangdao 2022-09 seagrass seagrass root 41750500 SAMN38338617 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR26898567 21693 SRR5360922 AMPLICON PRJNA379357 Saltmarsh 53.76202N 7.7222E Germany: Spiekeroog 2015 Salt marsh sediment 171767727 SAMN06606316 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360922 21995 SRR5486618 AMPLICON PRJNA384656 Saltmarsh 39.0889N 75.4363W USA:Deleware\,St. Jones Reserve 2010-10-05 salt marsh tidal mudflat 58607998 SAMN06843678 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486618 21997 SRR5486620 AMPLICON PRJNA384656 Saltmarsh 39.0889N 75.4363W USA:Deleware\,St. Jones Reserve 2010-10-05 salt marsh tidal mudflat 83702476 SAMN06843676 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486620 22014 SRR5486637 AMPLICON PRJNA384656 Saltmarsh 41.5806N 70.5198W USA:Massachusetts\,Waquoit Bay 2010-10-19 salt marsh tidal mudflat 46535902 SAMN06843658 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486637 22015 SRR5486638 AMPLICON PRJNA384656 Saltmarsh 41.5806N 70.5198W USA:Massachusetts\,Waquoit Bay 2010-10-19 salt marsh tidal mudflat 52362114 SAMN06843657 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486638 16566 SRR5725178 AMPLICON PRJNA390570 Mangrove 15.30 N 73.51 E India: Goa 2015/02/05 Mangrove SOIL 85629270 SAMN06675416 PAIRED Illumina HiSeq 2500 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5725178 22904 SRR6424045 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914476 E Taiwan 2015-02-15 seagrass rhizosphere 69284180 SAMN08222589 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424045 22906 SRR6424047 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914454 E Taiwan 2013-08-01 seagrass sediment 45845912 SAMN08222567 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424047 22908 SRR6424049 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914458 E Taiwan 2013-08-01 seagrass rhizosphere 59309040 SAMN08222571 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424049 22909 SRR6424050 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.91446 E Taiwan 2014-01-10 seagrass sediment 59862278 SAMN08222573 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424050 22910 SRR6424051 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914472 E Taiwan 2015-02-15 seagrass sediment 76136746 SAMN08222585 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424051 22133 SRR6761095 AMPLICON PRJNA433990 Saltmarsh 29.927599N 88.829308W USA: Chandeleur Islands 2017-02-23 salt marsh sediment 273563248 SAMN08536657 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6761095 22918 SRR7550297 AMPLICON PRJNA482222 Seagrass 55.58 N 3.4 W United Kingdom: Scotland 2015-07 seagrass Sediment 105404169 SAMN09700782 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR7550297 22919 SRR7550298 AMPLICON PRJNA482222 Seagrass 55.58 N 3.4 W United Kingdom: Scotland 2015-07 seagrass Sediment 86451479 SAMN09700783 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR7550298 22920 SRR7550299 AMPLICON PRJNA482222 Seagrass 55.58 N 3.4 W United Kingdom: Scotland 2015-07 seagrass Sediment 65444561 SAMN09700784 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR7550299 22924 SRR7550303 AMPLICON PRJNA482222 Seagrass 55.58 N 3.4 W United Kingdom: Scotland 2015-07 seagrass Sediment 124711423 SAMN09700780 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR7550303 22925 SRR7550304 AMPLICON PRJNA482222 Seagrass 55.58 N 3.4 W United Kingdom: Scotland 2015-07 seagrass Sediment 97919515 SAMN09700781 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR7550304 22938 SRR7550317 AMPLICON PRJNA482222 Seagrass 55.58 N 3.4 W United Kingdom: Scotland 2015-07 seagrass Sediment 110616185 SAMN09700797 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR7550317 22973 SRR7550352 AMPLICON PRJNA482222 Seagrass 55.58 N 3.4 W United Kingdom: Scotland 2015-07 seagrass Sediment 102995178 SAMN09700799 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR7550352 22974 SRR7550353 AMPLICON PRJNA482222 Seagrass 55.58 N 3.4 W United Kingdom: Scotland 2015-07 seagrass Sediment 99711435 SAMN09700798 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR7550353 22975 SRR7550354 AMPLICON PRJNA482222 Seagrass 55.58 N 3.4 W United Kingdom: Scotland 2015-07 seagrass Sediment 148430626 SAMN09700801 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR7550354 22976 SRR7550355 AMPLICON PRJNA482222 Seagrass 55.58 N 3.4 W United Kingdom: Scotland 2015-07 seagrass Sediment 104820959 SAMN09700800 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR7550355 16006 SRR7585831 AMPLICON PRJNA415044 Mangrove 22.20 N 39.17 E Saudi Arabia: Thuwal 2025/08/16 Mangrove Sediment 244185841 SAMN09699943 PAIRED Illumina MiSeq METAGENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR7585831