# Export date: 2026-06-15 19:27:55 # Microbe: Legionella_D Legionella_D israelensis (ID: 9233) # Total amplicons: 59 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 20870 SRR11233197 AMPLICON PRJNA602775 Saltmarsh 41.7119N 69.9954W USA: Harwich\, MA Muddy Creek Marsh 2015-11-04 sediment 19111275 SAMN13950580 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR11233197 21611 SRR11772251 AMPLICON PRJNA631747 Saltmarsh 42.78594979N 70.83731232W USA 2016 Sporobolus alterniflorus sediment 5081028422 SAMN14891083 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR11772251 19924 SRR12033736 AMPLICON PRJNA639819 Seaweed 43.5N 5.54E France: La Seyne 2017/05/01 Water Seawater 45399000 SAMN15250129 SINGLE Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12033736 14965 SRR12164895 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 95758364 SAMN15447454 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164895 14967 SRR12164897 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 84254830 SAMN15447452 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164897 14970 SRR12164900 AMPLICON PRJNA644071 Mangrove China:Shenzhen 2019/07/18 Mangrove soil sample 93627572 SAMN15447449 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR12164900 20644 SRR13379990 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-06 Salt marsh sediment 39196071 SAMN17251870 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13379990 20671 SRR13380022 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-08 Salt marsh sediment 87525579 SAMN17251814 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380022 20730 SRR13380088 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-06 Salt marsh sediment 50053486 SAMN17251929 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380088 20762 SRR13380128 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2016-05 Salt marsh sediment 4974075 SAMN17251883 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380128 20767 SRR13380133 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-05 Salt marsh sediment 32115236 SAMN17251868 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380133 20780 SRR13380146 AMPLICON PRJNA690562 Saltmarsh 30.26194444N 88.23833333W USA: Alabama 2015-07 Salt marsh sediment 39571938 SAMN17251767 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR13380146 24081 SRR19536341 AMPLICON PRJNA845084 Seagrass 34.95 S 138.5 E Australia: West Beach\, South Australia 2019 Posidonia angustifolia roots 16877487 SAMN28854753 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR19536341 22035 SRR22025441 AMPLICON PRJNA893704 Saltmarsh 38.72246N 76.33719W USA: Chesapeake Bay 2019-06-28 Spartina alterniflora peat soil 92464530 SAMN31431889 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025441 22038 SRR22025445 AMPLICON PRJNA893704 Saltmarsh 38.72246N 76.33719W USA: Chesapeake Bay 2019-06-28 Spartina alterniflora peat soil 106732615 SAMN31431885 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025445 22039 SRR22025446 AMPLICON PRJNA893704 Saltmarsh 38.7652N 76.38328W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 67417664 SAMN31431831 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025446 22042 SRR22025449 AMPLICON PRJNA893704 Saltmarsh 38.74721N 76.36911W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 78319161 SAMN31431882 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025449 22050 SRR22025459 AMPLICON PRJNA893704 Saltmarsh 38.75742N 76.3789W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 133524708 SAMN31431873 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025459 22055 SRR22025464 AMPLICON PRJNA893704 Saltmarsh 38.75533N 76.38017W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 84398424 SAMN31431868 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025464 22056 SRR22025465 AMPLICON PRJNA893704 Saltmarsh 38.75533N 76.38017W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 95838511 SAMN31431867 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025465 22068 SRR22025479 AMPLICON PRJNA893704 Saltmarsh 38.76712N 76.38478W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 65579596 SAMN31431828 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025479 22073 SRR22025484 AMPLICON PRJNA893704 Saltmarsh 38.76089N 76.38416W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 60722179 SAMN31431850 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025484 22076 SRR22025487 AMPLICON PRJNA893704 Saltmarsh 38.77079N 76.37722W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 62737399 SAMN31431847 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025487 22083 SRR22025494 AMPLICON PRJNA893704 Saltmarsh 38.77305N 76.37802W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 69600272 SAMN31431841 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025494 22085 SRR22025496 AMPLICON PRJNA893704 Saltmarsh 38.76777N 76.37918W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 62101473 SAMN31431839 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025496 22086 SRR22025497 AMPLICON PRJNA893704 Saltmarsh 38.76908N 76.3786W USA: Chesapeake Bay 2019-07-12 Spartina alterniflora peat soil 67780058 SAMN31431838 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR22025497 24111 SRR23715697 AMPLICON PRJNA925291 Seagrass 33.089403 S 151.549078 E Australia: Balcolyn 2020-09-08 Zostera muelleri Estuarine sediment 85800653 SAMN33555414 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23715697 24124 SRR23715710 AMPLICON PRJNA925291 Seagrass 33.102465 S 151.56519 E Australia: Johnys Point 2020-09-08 Zostera muelleri Estuarine sediment 65523256 SAMN33555420 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23715710 22090 SRR23933683 AMPLICON PRJNA925448 Saltmarsh 43.2926N 70.5725W USA: Wells\, Maine 2021-06-22 marsh sediment 49448004 SAMN33188437 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23933683 22095 SRR23933689 AMPLICON PRJNA925448 Saltmarsh 44.616826N 67.802903W USA: Harrington\, Maine 2021-08-14 marsh sediment 65510498 SAMN33188431 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23933689 22100 SRR23933743 AMPLICON PRJNA925448 Saltmarsh 44.616826N 67.802903W USA: Harrington\, Maine 2021-06-25 marsh sediment 135641404 SAMN33188457 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23933743 22102 SRR23933819 AMPLICON PRJNA925448 Saltmarsh 43.2926N 70.5725W USA: Wells\, Maine 2021-06-25 marsh sediment 42478738 SAMN33188475 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23933819 22113 SRR23933945 AMPLICON PRJNA925448 Saltmarsh 39.5056N 74.4268W USA: Galloway\, New Jersey 2021-06-25 marsh sediment 149488572 SAMN33188275 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23933945 21621 SRR26165206 AMPLICON PRJNA1019769 Saltmarsh USA:Delaware\,St Jones Reserve 2020 sediment 27129084 SAMN37494726 SINGLE Illumina MiSeq OTHER 16s https://www.ncbi.nlm.nih.gov/sra/SRR26165206 21678 SRR5360904 AMPLICON PRJNA379357 Saltmarsh 53.76196N 7.72275E Germany: Spiekeroog 2015 Salt marsh sediment 180720490 SAMN06606334 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360904 21700 SRR5360930 AMPLICON PRJNA379357 Saltmarsh 53.76209N 7.72294E Germany: Spiekeroog 2015 Salt marsh sediment 145775568 SAMN06606308 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360930 21707 SRR5360937 AMPLICON PRJNA379357 Saltmarsh 53.76191N 7.72333E Germany: Spiekeroog 2015 Salt marsh sediment 139671037 SAMN06606301 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360937 21955 SRR5486571 AMPLICON PRJNA384656 Saltmarsh 41.6249N 71.3228W USA:Rhode Island\,Prudence Island 2010-10-25 salt marsh tidal mudflat 81388256 SAMN06843725 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486571 21993 SRR5486616 AMPLICON PRJNA384656 Saltmarsh 39.0889N 75.4363W USA:Deleware\,St. Jones Reserve 2010-10-05 salt marsh tidal mudflat 74330638 SAMN06843680 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486616 22001 SRR5486624 AMPLICON PRJNA384656 Saltmarsh 41.6249N 71.3228W USA:Rhode Island\,Prudence Island 2010-10-25 salt marsh tidal mudflat 83833498 SAMN06843672 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486624 22003 SRR5486626 AMPLICON PRJNA384656 Saltmarsh 41.6249N 71.3228W USA:Rhode Island\,Prudence Island 2010-10-25 salt marsh tidal mudflat 78414910 SAMN06843670 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486626 22006 SRR5486629 AMPLICON PRJNA384656 Saltmarsh 41.6249N 71.3228W USA:Rhode Island\,Prudence Island 2010-10-25 salt marsh tidal mudflat 61409660 SAMN06843666 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486629 22007 SRR5486630 AMPLICON PRJNA384656 Saltmarsh 41.6249N 71.3228W USA:Rhode Island\,Prudence Island 2010-10-25 salt marsh tidal mudflat 71080690 SAMN06843665 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486630 22008 SRR5486631 AMPLICON PRJNA384656 Saltmarsh 41.6249N 71.3228W USA:Rhode Island\,Prudence Island 2010-10-25 salt marsh tidal mudflat 73547016 SAMN06843664 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486631 22010 SRR5486633 AMPLICON PRJNA384656 Saltmarsh 41.6249N 71.3228W USA:Rhode Island\,Prudence Island 2010-10-25 salt marsh tidal mudflat 55826918 SAMN06843662 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486633 22024 SRR5486647 AMPLICON PRJNA384656 Saltmarsh 41.5806N 70.5198W USA:Massachusetts\,Waquoit Bay 2010-10-19 salt marsh tidal mudflat 76776382 SAMN06843648 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486647 22025 SRR5486648 AMPLICON PRJNA384656 Saltmarsh 41.5806N 70.5198W USA:Massachusetts\,Waquoit Bay 2010-10-19 salt marsh tidal mudflat 67146516 SAMN06843647 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5486648 17577 SRR5814393 AMPLICON PRJNA393594 Mangrove 25.15 N 121.43 E Taiwan: Tamsui\, Taipei 2025/01/16 Mangrove soil 65572619 SAMN07338415 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR5814393 22908 SRR6424049 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914458 E Taiwan 2013-08-01 seagrass rhizosphere 59309040 SAMN08222571 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424049 22133 SRR6761095 AMPLICON PRJNA433990 Saltmarsh 29.927599N 88.829308W USA: Chandeleur Islands 2017-02-23 salt marsh sediment 273563248 SAMN08536657 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR6761095 21837 SRR7877529 AMPLICON PRJNA491859 Saltmarsh 42.7488N 70.5811W USA: Rough Meadows Marsh\, Rowley\, Massachusetts 2015-11-07 Salt marsh sediment 37219122 SAMN10092197 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR7877529 21840 SRR7877532 AMPLICON PRJNA491859 Saltmarsh 42.7488N 70.5811W USA: Rough Meadows Marsh\, Rowley\, Massachusetts 2015-11-07 Salt marsh sediment 59157820 SAMN10092190 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR7877532 16944 SRR8157622 AMPLICON PRJNA503486 Mangrove 11.5579 N 72.8875 W Colombia: Guajira 2017/04/25 Mangrove mangrove soil 44635290 SAMN10361654 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR8157622 16946 SRR8157624 AMPLICON PRJNA503486 Mangrove 11.5579 N 72.8875 W Colombia: Guajira 2017/04/25 Mangrove mangrove soil 55166678 SAMN10361650 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR8157624 21035 SRR8207353 AMPLICON PRJNA505917 Saltmarsh 42.76N 70.89W USA: Plum Island Estuary 2016-03-09 Spartina alterniflora sediment 14553505 SAMN10439474 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8207353