# Export date: 2026-06-14 23:01:13 # Microbe: Pseudomonas_E_650325 Pseudomonas_E_650325 peli (ID: 9420) # Total amplicons: 43 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 22526 ERR3890601 AMPLICON PRJEB36104 Seagrass 38.259672 N 141.847366 E 2016-07-07 Zostera muelleri leaf 40510800 SAMEA6528912 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR3890601 22550 ERR3890625 AMPLICON PRJEB36104 Seagrass 38.642901 N 143.059055 E 2016-07-08 Zostera muelleri leaf 41959200 SAMEA6528936 PAIRED Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/ERR3890625 19783 SRR10092915 AMPLICON PRJNA564581 Seaweed 43.04777778N 144.94972222E Japan 2016/09/15 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 24643702 SAMN12716378 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092915 19784 SRR10092916 AMPLICON PRJNA564581 Seaweed 43.04777778N 144.94972222E Japan 2016/09/15 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 26229145 SAMN12716377 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092916 19785 SRR10092917 AMPLICON PRJNA564581 Seaweed 43.04777778N 144.94972222E Japan 2016/09/15 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 20140633 SAMN12716376 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092917 19788 SRR10092920 AMPLICON PRJNA564581 Seaweed 43.04777778N 144.94972222E Japan 2016/09/15 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 19124542 SAMN12716373 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092920 19789 SRR10092921 AMPLICON PRJNA564581 Seaweed 43.04777778N 144.94972222E Japan 2016/09/15 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 22404948 SAMN12716372 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092921 19792 SRR10092924 AMPLICON PRJNA564581 Seaweed 43.04777778N 144.94972222E Japan 2016/09/15 Gracilaria vermiculophylla/Agarophyton vermiculophyllum alga surface 16200745 SAMN12716370 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR10092924 20616 SRR12228798 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus maritimus rhizosphere 133311500 SAMN10953563 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228798 20618 SRR12228803 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus alterniflorus rhizosphere 36028000 SAMN10953560 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228803 20627 SRR12228837 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 106605500 SAMN10953574 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228837 20630 SRR12228840 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 96120000 SAMN10953571 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228840 20633 SRR12228845 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus maritimus rhizosphere 32079000 SAMN10953566 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228845 14822 SRR15928139 AMPLICON PRJNA764039 Mangrove 16.3862 S 145.5638 E Australia: GBR 2018/11/21 coral coral 45024303 SAMN21467030 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR15928139 14851 SRR15928168 AMPLICON PRJNA764039 Mangrove 16.3862 S 145.5638 E Australia: GBR 2018/07/01 coral coral 50807477 SAMN21467004 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR15928168 14901 SRR15928218 AMPLICON PRJNA764039 Mangrove 16.3862 S 145.5638 E Australia: GBR 2019/02/19 coral coral 35493977 SAMN21467062 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR15928218 24117 SRR23715703 AMPLICON PRJNA925291 Seagrass 33.063266 S 151.559895 E Australia: Myuna Bay 2020-09-09 Zostera muelleri Estuarine sediment 84352492 SAMN33555423 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23715703 22100 SRR23933743 AMPLICON PRJNA925448 Saltmarsh 44.616826N 67.802903W USA: Harrington\, Maine 2021-06-25 marsh sediment 135641404 SAMN33188457 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR23933743 16855 SRR26222186 AMPLICON PRJNA1021532 Mangrove 15.2933 N 73.4958 E India 2020/08/05 Mangrove mangrove sediment 871077000 SAMN37558049 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR26222186 16856 SRR26222187 AMPLICON PRJNA1021532 Mangrove 15.2958 N 73.4911 E India 2020/08/05 Mangrove mangrove sediment 1049480500 SAMN37558048 PAIRED Illumina NovaSeq 6000 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR26222187 20030 SRR4105463 AMPLICON PRJNA338162 Seaweed 23.487N 117.0939E China:Guangdong\, Shantou\, Nan'ao 2014/04/15 water 26113036 SAMN05521711 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR4105463 20032 SRR4105465 AMPLICON PRJNA338162 Seaweed 23.487N 117.0939E China:Guangdong\, Shantou\, Nan'ao 2014/04/15 water 48452036 SAMN05521713 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR4105465 20033 SRR4105466 AMPLICON PRJNA338162 Seaweed 23.487N 117.0939E China:Guangdong\, Shantou\, Nan'ao 2014/04/15 water 37133442 SAMN05521714 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR4105466 21662 SRR5360887 AMPLICON PRJNA379357 Saltmarsh 53.76226N 7.72227E Germany: Spiekeroog 2015 Salt marsh sediment 166936558 SAMN06606351 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360887 21667 SRR5360893 AMPLICON PRJNA379357 Saltmarsh 53.7626N 7.72312E Germany: Spiekeroog 2015 Salt marsh sediment 132962904 SAMN06606345 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360893 21670 SRR5360896 AMPLICON PRJNA379357 Saltmarsh 53.76256N 7.72346E Germany: Spiekeroog 2015 Salt marsh sediment 105858161 SAMN06606342 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360896 21676 SRR5360902 AMPLICON PRJNA379357 Saltmarsh 53.76261N 7.72296E Germany: Spiekeroog 2015 Salt marsh sediment 113693971 SAMN06606336 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360902 21688 SRR5360916 AMPLICON PRJNA379357 Saltmarsh 53.76256N 7.72346E Germany: Spiekeroog 2015 Salt marsh sediment 113077745 SAMN06606322 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360916 21689 SRR5360917 AMPLICON PRJNA379357 Saltmarsh 53.76209N 7.72326E Germany: Spiekeroog 2015 Salt marsh sediment 140942500 SAMN06606321 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360917 21696 SRR5360926 AMPLICON PRJNA379357 Saltmarsh 53.76261N 7.72296E Germany: Spiekeroog 2015 Salt marsh sediment 115640222 SAMN06606312 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360926 21702 SRR5360932 AMPLICON PRJNA379357 Saltmarsh 53.76256N 7.72346E Germany: Spiekeroog 2015 Salt marsh sediment 123253015 SAMN06606306 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360932 21713 SRR5360943 AMPLICON PRJNA379357 Saltmarsh 53.7626N 7.72312E Germany: Spiekeroog 2014 Salt marsh sediment 89615105 SAMN06606295 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360943 16567 SRR5725179 AMPLICON PRJNA390570 Mangrove 15.50 N 73.91 E India: Goa 2015/02/05 Mangrove soil 119168986 SAMN06675420 PAIRED Illumina HiSeq 2500 METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR5725179 22903 SRR6424044 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914474 E Taiwan 2015-02-15 seagrass root 46374468 SAMN08222587 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424044 22904 SRR6424045 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914476 E Taiwan 2015-02-15 seagrass rhizosphere 69284180 SAMN08222589 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424045 22908 SRR6424049 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914458 E Taiwan 2013-08-01 seagrass rhizosphere 59309040 SAMN08222571 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424049 22910 SRR6424051 AMPLICON PRJNA427074 Seagrass 24.778918 N 120.914472 E Taiwan 2015-02-15 seagrass sediment 76136746 SAMN08222585 PAIRED Illumina MiSeq METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR6424051 21054 SRR8931062 AMPLICON PRJNA533745 Saltmarsh 48.15N 134.61E China: Sanjiang wetland 2017-12-12T10:40:00Z soil 17615209 SAMN11465914 PAIRED Illumina HiSeq 2000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8931062 21059 SRR8931067 AMPLICON PRJNA533745 Saltmarsh 45.75N 122.45E China: Momoge wetland 2017-12-13T10:15:00Z soil 25015794 SAMN11465918 PAIRED Illumina HiSeq 2000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8931067 21065 SRR8931074 AMPLICON PRJNA533745 Saltmarsh 48.15N 134.61E China: Sanjiang wetland 2017-12-12T10:35:00Z soil 26319463 SAMN11465913 PAIRED Illumina HiSeq 2000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8931074 21067 SRR8931076 AMPLICON PRJNA533745 Saltmarsh 48.15N 134.61E China: Sanjiang wetland 2017-12-12T10:10:00Z soil 22702016 SAMN11465908 PAIRED Illumina HiSeq 2000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR8931076 21277 SRR9089761 AMPLICON PRJNA543559 Saltmarsh 30.97N 121.95E China:Shanghai 2017-06 salt marsh soil 41755322 SAMN11774855 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089761 21293 SRR9089779 AMPLICON PRJNA543559 Saltmarsh 30.89N 121.97E China:Shanghai 2018-03 salt marsh soil 43419852 SAMN11774870 PAIRED Illumina MiniSeq GENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR9089779