# Export date: 2026-06-15 10:42:25 # Microbe: Thiomicrospira (ID: 9539) # Total amplicons: 40 # Field descriptions: # id: id # run: Run ID, e.g., SRR15928122 # assay_type: Sequencing assay type, e.g., AMPLICON # bioproject: Bioproject ID, e.g., PRJNA764039 # habitat: Habitat type, e.g., Mangrove # latitude: Latitude, e.g., 16.3862 S # longitude: Longitude, e.g., 145.5638 E # geo_location: Geographic location, e.g., Australia: GBR # collection_date: Collection date # host: Host, e.g., coral # sample_isolated: Sample isolated from, e.g., coral # bases: Number of bases # biosample: Biosample ID, e.g., SAMN21467046 # layout: Sequencing layout, e.g., PAIRED # instrument: Sequencing instrument, e.g., Illumina MiSeq # library_source: Library source, e.g., GENOMIC # amplicon_type: Amplicon type, e.g., 16S # reference: Reference link, e.g., https://www.ncbi.nlm.nih.gov/sra/SRR15928122 #-------------------------------------------------------------------------------- id run assay_type bioproject habitat latitude longitude geo_location collection_date host sample_isolated bases biosample layout instrument library_source amplicon_type reference 15034 SRR10392987 AMPLICON PRJNA578400 Mangrove 18.3202416 N 64.7247868 W Virgin Islands: Southern Shore of St. John 2017/07/23 Seawater Northeastern Caribbean Seawater 37936140 SAMN13071630 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR10392987 15037 SRR10392990 AMPLICON PRJNA578400 Mangrove 18.3206508 N 64.7621709 W Virgin Islands: Southern Shore of St. John 2017/07/23 Seawater Northeastern Caribbean Seawater 38903494 SAMN13071686 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR10392990 15049 SRR10393002 AMPLICON PRJNA578400 Mangrove 18.3185583 N 64.7242358 W Virgin Islands: Southern Shore of St. John 2017/07/23 Seawater Northeastern Caribbean Seawater 37006436 SAMN13071675 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR10393002 15052 SRR10393005 AMPLICON PRJNA578400 Mangrove 18.3206508 N 64.7621709 W Virgin Islands: Southern Shore of St. John 2017/07/23 Seawater Northeastern Caribbean Seawater 43219188 SAMN13071672 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR10393005 15068 SRR10393021 AMPLICON PRJNA578400 Mangrove 18.3202416 N 64.7247868 W Virgin Islands: Southern Shore of St. John 2017/07/22 Seawater Northeastern Caribbean Seawater 34738902 SAMN13071658 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR10393021 15076 SRR10393029 AMPLICON PRJNA578400 Mangrove 18.3206508 N 64.7621709 W Virgin Islands: Southern Shore of St. John 2017/07/22 Seawater Northeastern Caribbean Seawater 35876434 SAMN13071651 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR10393029 15088 SRR10393041 AMPLICON PRJNA578400 Mangrove 18.3206508 N 64.7621709 W Virgin Islands: Southern Shore of St. John 2017/07/24 Seawater Northeastern Caribbean Seawater 19035840 SAMN13071640 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR10393041 15095 SRR10393048 AMPLICON PRJNA578400 Mangrove 18.3206508 N 64.7621709 W Virgin Islands: Southern Shore of St. John 2017/07/22 Seawater Northeastern Caribbean Seawater 69721274 SAMN13071633 PAIRED Illumina MiSeq GENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR10393048 20615 SRR12228797 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus maritimus rhizosphere 78202500 SAMN10953564 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228797 20616 SRR12228798 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus maritimus rhizosphere 133311500 SAMN10953563 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228798 20617 SRR12228800 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus maritimus rhizosphere 236680000 SAMN10953561 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228800 20618 SRR12228803 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus alterniflorus rhizosphere 36028000 SAMN10953560 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228803 20619 SRR12228814 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus alterniflorus rhizosphere 61578500 SAMN10953559 PAIRED Illumina MiSeq METAGENOMIC ITS https://www.ncbi.nlm.nih.gov/sra/SRR12228814 20622 SRR12228831 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus bulk soil 81997000 SAMN10953579 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228831 20624 SRR12228834 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 554476500 SAMN10953576 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228834 20625 SRR12228835 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 123993000 SAMN10953575 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228835 20626 SRR12228836 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus alterniflorus rhizosphere 206085000 SAMN10953557 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228836 20627 SRR12228837 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus anglicus rhizosphere 106605500 SAMN10953574 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228837 20629 SRR12228839 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 59373500 SAMN10953572 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228839 20630 SRR12228840 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 96120000 SAMN10953571 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228840 20631 SRR12228842 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 42956000 SAMN10953569 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228842 20632 SRR12228844 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus x townsendii rhizosphere 175354000 SAMN10953567 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228844 20633 SRR12228845 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus maritimus rhizosphere 32079000 SAMN10953566 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228845 20634 SRR12228846 AMPLICON PRJNA518897 Saltmarsh 48.117679N 1.639944W France: Rennes 2016-01-27 Sporobolus maritimus rhizosphere 63238500 SAMN10953565 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR12228846 22404 SRR17216890 AMPLICON PRJNA788471 Saltmarsh 40.031N 74.08W USA: New Jersey 2018-06 sediment 7884332 SAMN24002234 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216890 22407 SRR17216893 AMPLICON PRJNA788471 Saltmarsh 40.031N 74.08W USA: New Jersey 2018-06 sediment 7874810 SAMN24002231 SINGLE Illumina MiSeq GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR17216893 24095 SRR21686201 AMPLICON PRJNA881797 Seagrass NA China: Binzhou 2022-07-30 Seagrass surrounding_water 61455130 SAMN30916023 PAIRED Illumina NovaSeq 6000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR21686201 24096 SRR21686202 AMPLICON PRJNA881797 Seagrass NA China: Binzhou 2022-07-30 Seagrass surrounding_water 72800802 SAMN30916022 PAIRED Illumina NovaSeq 6000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR21686202 24097 SRR21686203 AMPLICON PRJNA881797 Seagrass NA China: Binzhou 2022-07-30 Seagrass surrounding_water 67355650 SAMN30916021 PAIRED Illumina NovaSeq 6000 GENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR21686203 17314 SRR5319008 AMPLICON PRJNA351850 Mangrove 22.12 N 88.99 E India: West Bengal 2015/08/01 fresh water surface water 111864132 SAMN06448880 PAIRED Illumina HiSeq 2000 METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR5319008 17315 SRR5319009 AMPLICON PRJNA351850 Mangrove 22.08 N 88.76 E India: West Bengal 2015/08/01 fresh water surface water 149019156 SAMN06448879 PAIRED Illumina HiSeq 2000 METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR5319009 17316 SRR5319010 AMPLICON PRJNA351850 Mangrove 22.88 N 88.57 E India: West Bengal 2015/08/01 fresh water surface water 140330140 SAMN06448878 PAIRED Illumina HiSeq 2000 METAGENOMIC https://www.ncbi.nlm.nih.gov/sra/SRR5319010 21713 SRR5360943 AMPLICON PRJNA379357 Saltmarsh 53.7626N 7.72312E Germany: Spiekeroog 2014 Salt marsh sediment 89615105 SAMN06606295 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360943 21718 SRR5360949 AMPLICON PRJNA379357 Saltmarsh 53.76256N 7.72358E Germany: Spiekeroog 2014 Salt marsh sediment 97142823 SAMN06606289 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360949 21720 SRR5360951 AMPLICON PRJNA379357 Saltmarsh 53.76191N 7.72333E Germany: Spiekeroog 2014 Salt marsh sediment 50467575 SAMN06606287 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360951 21721 SRR5360952 AMPLICON PRJNA379357 Saltmarsh 53.76267N 7.72239E Germany: Spiekeroog 2014 Salt marsh sediment 74715789 SAMN06606286 PAIRED Illumina MiSeq METAGENOMIC 16s https://www.ncbi.nlm.nih.gov/sra/SRR5360952 17245 SRR6201162 AMPLICON PRJNA415044 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove sediment 16387967 SAMN07813359 PAIRED Illumina MiSeq METAGENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR6201162 17252 SRR6201169 AMPLICON PRJNA415044 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove sediment 31241894 SAMN07813356 PAIRED Illumina MiSeq METAGENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR6201169 17279 SRR6201196 AMPLICON PRJNA415044 Mangrove 31.42 S 29.25 E South Africa: Mngazana 2025/04/16 Mangrove sediment 6560548 SAMN07813294 PAIRED Illumina MiSeq METAGENOMIC 16S、ITS https://www.ncbi.nlm.nih.gov/sra/SRR6201196 16660 SRR9593124 AMPLICON PRJNA550512 Mangrove 6.8487778 N 101.00833 E Thailand 2018/07/31 Mud estuarine mud 56031800 SAMN12124991 PAIRED Illumina MiSeq METAGENOMIC 16S https://www.ncbi.nlm.nih.gov/sra/SRR9593124