Amplicon

Overview and guidance for exploring amplicon datasets and their detailed information.

Amplicon Interface
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    Sample Overview: We provides a comprehensive overview of our amplicon database, which contains over 9,602 datasets including 16S, 18S, and ITS sequences from key blue carbon ecosystems such as seagrass, salt marsh, mangrove, and seaweed environments. Users can explore interactive charts showing sample distribution and environmental medium composition, search for specific samples by run ID, bioproject, habitat, or host, and view detailed information for each amplicon dataset. The database supports advanced filtering and sorting capabilities to facilitate efficient data discovery and analysis.
Amplicon Overview
Amplicon Details
Amplicon Analysis
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    Data download and visualization: We also provides a comprehensive overview of a selected amplicon sample, including basic information such as run ID, BioProject/BioSample identifiers, and amplicon type. Users can explore detailed sequencing information, sample metadata, and geographic location data. The page features interactive taxonomy composition visualizations with dual QIIME and VSEARCH analysis views, allowing users to compare different analysis pipelines. Additionally, all relevant analysis files including Krona charts, taxonomy tables, and functional prediction reports can be conveniently downloaded for further research and analysis.